Wall clock time and date at job start Tue Mar 31 2020 16:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38256 * 119.99970 * 90.00125 * 3 2 1 5 5 C 1.38215 * 119.99593 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00251 * 0.02617 * 5 4 3 7 7 C 1.38210 * 120.00038 * 359.97145 * 6 5 4 8 8 C 1.50702 * 119.99867 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47381 * 90.00526 * 8 7 6 10 10 O 1.21282 * 119.99298 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00321 * 180.02562 * 9 8 7 12 12 C 1.47429 * 125.64479 * 359.68924 * 11 9 8 13 13 C 1.55129 * 104.71850 * 155.82037 * 12 11 9 14 14 H 1.09000 * 111.22224 * 279.17304 * 13 12 11 15 15 N 1.46494 * 110.90545 * 155.27750 * 13 12 11 16 16 C 1.36934 * 120.00627 * 92.97078 * 15 13 12 17 17 H 1.08002 * 119.99615 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00267 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00174 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00120 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47011 * 60.00069 * 20 18 16 22 22 H 1.48498 * 109.47277 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46987 * 300.00393 * 20 18 16 24 24 C 1.55151 * 101.49035 * 37.29283 * 13 12 11 25 25 C 1.52997 * 110.72283 * 205.96993 * 24 13 12 26 26 C 1.52998 * 110.71851 * 82.69270 * 24 13 12 27 27 C 1.47018 * 125.64843 * 179.97438 * 11 9 8 28 28 C 1.38210 * 119.99871 * 269.72984 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07998 * 120.00297 * 0.02562 * 4 3 2 35 35 H 1.07998 * 119.99659 * 180.02562 * 5 4 3 36 36 H 1.08002 * 120.00259 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.46846 * 210.00069 * 8 7 6 38 38 H 1.09001 * 109.47336 * 329.99890 * 8 7 6 39 39 H 1.09004 * 110.36400 * 274.74468 * 12 11 9 40 40 H 1.08994 * 110.36885 * 37.06791 * 12 11 9 41 41 H 0.97008 * 119.99654 * 272.97279 * 15 13 12 42 42 H 0.97000 * 120.00303 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47235 * 174.97201 * 25 24 13 44 44 H 1.08995 * 109.46896 * 294.97501 * 25 24 13 45 45 H 1.09003 * 109.46997 * 54.97843 * 25 24 13 46 46 H 1.08999 * 109.47505 * 305.02502 * 26 24 13 47 47 H 1.09000 * 109.46709 * 65.03043 * 26 24 13 48 48 H 1.09008 * 109.47189 * 185.02539 * 26 24 13 49 49 H 1.09003 * 109.88187 * 300.43939 * 27 11 9 50 50 H 1.09001 * 109.88108 * 61.44918 * 27 11 9 51 51 H 1.08001 * 120.00230 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7239 3.3755 1.1972 6 6 2.9542 4.0273 -0.0001 7 6 2.7239 3.3757 -1.1970 8 6 2.9745 4.0864 -2.5021 9 6 4.3977 3.8502 -2.9376 10 8 5.1360 3.1720 -2.2550 11 7 4.8504 4.3934 -4.0849 12 6 4.0630 5.2301 -5.0087 13 6 5.1168 6.0787 -5.7675 14 1 5.4356 6.9352 -5.1735 15 7 4.6021 6.5089 -7.0699 16 6 3.9801 7.7225 -7.1935 17 1 3.8685 8.3624 -6.3306 18 6 3.4920 8.1299 -8.4274 19 7 3.6266 7.3494 -9.4786 20 14 2.6428 9.7852 -8.5958 21 1 3.5841 10.8661 -8.2078 22 1 2.2162 9.9816 -10.0046 23 1 1.4525 9.8233 -7.7088 24 6 6.2727 5.0576 -5.9360 25 6 7.6169 5.7774 -6.0620 26 6 6.0250 4.1544 -7.1458 27 6 6.2096 4.2450 -4.6255 28 6 2.2679 2.0705 -1.1969 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0832 1.5634 2.1327 35 1 2.9043 3.8845 2.1325 36 1 3.3142 5.0455 -0.0002 37 1 2.2937 3.7020 -3.2616 38 1 2.8070 5.1555 -2.3717 39 1 3.5041 4.6042 -5.7045 40 1 3.3858 5.8769 -4.4511 41 1 4.7020 5.9339 -7.8448 42 1 3.2858 7.6341 -10.3410 43 1 8.4214 5.0425 -6.0895 44 1 7.6298 6.3647 -6.9801 45 1 7.7571 6.4377 -5.2062 46 1 5.0497 3.6773 -7.0496 47 1 6.0486 4.7527 -8.0567 48 1 6.8004 3.3897 -7.1932 49 1 6.9366 4.6340 -3.9125 50 1 6.4151 3.1939 -4.8282 51 1 2.0925 1.5598 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995972526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:27 Heat of formation + Delta-G solvation = -14.214171 kcal Electronic energy + Delta-G solvation = -28319.822187 eV Core-core repulsion = 24604.467138 eV Total energy + Delta-G solvation = -3715.355050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.25016 -39.39153 -37.85250 -34.54868 -34.14251 -33.23618 -32.35972 -30.84366 -29.64806 -28.17546 -27.52025 -27.02208 -25.59604 -24.07692 -23.94176 -22.19300 -21.53169 -20.59578 -18.93249 -18.55430 -17.36180 -16.73674 -16.54823 -16.06401 -15.57022 -15.30400 -14.91467 -14.58426 -14.11650 -14.03054 -13.86819 -13.74500 -13.62942 -13.23122 -13.05239 -12.91817 -12.86342 -12.69758 -12.17782 -12.15918 -11.99430 -11.84944 -11.80709 -11.55481 -11.40091 -11.30015 -11.05846 -10.97466 -10.92632 -10.86695 -10.56423 -10.48793 -10.27750 -9.92558 -9.77289 -9.64199 -9.03529 -8.80639 -8.63229 -8.32424 -7.11581 -5.88949 -3.19262 1.30156 1.37651 2.84795 3.22246 3.37115 3.42592 3.42957 3.77099 4.48406 4.56031 4.61117 4.72289 4.77775 4.97699 5.04203 5.06514 5.10237 5.15424 5.15960 5.22699 5.33455 5.43173 5.47478 5.51655 5.53988 5.59648 5.67418 5.69676 5.71743 5.78286 5.87337 5.93755 5.98073 6.01237 6.03331 6.06414 6.13096 6.19126 6.31291 6.33366 6.40610 6.43058 6.52916 6.55865 6.59177 6.65363 6.70840 6.86853 6.97860 7.59378 7.80986 8.29044 8.39573 9.41408 9.95342 10.30603 11.32999 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.002652 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.329694 B =10556.282827 C =11440.214173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.100 4.100 9 C 0.528 3.472 10 O -0.546 6.546 11 N -0.613 5.613 12 C 0.071 3.929 13 C 0.181 3.819 14 H 0.068 0.932 15 N -0.709 5.709 16 C -0.249 4.249 17 H 0.071 0.929 18 C -0.007 4.007 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.134 4.134 27 C 0.121 3.879 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.390 0.610 42 H 0.258 0.742 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -10.867 16.440 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.140 4.140 9 C 0.316 3.684 10 O -0.424 6.424 11 N -0.347 5.347 12 C -0.055 4.055 13 C 0.068 3.932 14 H 0.086 0.914 15 N -0.351 5.351 16 C -0.380 4.380 17 H 0.089 0.911 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.089 4.089 25 C -0.186 4.186 26 C -0.191 4.191 27 C -0.002 4.002 28 C -0.120 4.120 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.227 0.773 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.308 -11.072 16.821 20.180 hybrid contribution -0.533 0.812 -0.468 1.078 sum -1.841 -10.260 16.353 19.393 Atomic orbital electron populations 1.21747 0.94774 1.01578 1.02242 1.20532 0.96097 0.92776 1.02787 1.19810 0.99335 0.96106 0.93097 1.20952 1.00727 0.95034 0.97283 1.21046 0.99742 0.94971 0.97773 1.20969 0.99755 1.00055 0.91988 1.19308 0.98311 0.94260 0.93724 1.20662 0.94835 1.02568 0.95925 1.20115 0.89231 0.79349 0.79709 1.90691 1.58448 1.39590 1.53692 1.48517 1.13570 1.50904 1.21693 1.23582 0.96660 0.93382 0.91908 1.21378 0.89657 0.93264 0.88859 0.91359 1.42443 1.68062 1.20145 1.04417 1.19209 1.29879 0.94433 0.94475 0.91094 1.24747 1.01415 0.98539 0.95686 1.69638 1.51186 1.37146 0.99741 0.86271 0.79461 0.83695 0.76747 1.21180 1.21670 1.21162 1.21877 0.97227 0.96149 0.93675 1.21681 0.94735 0.99612 1.02583 1.21713 1.00986 0.98521 0.97894 1.22011 0.83760 0.99819 0.94559 1.20839 0.99659 0.93946 0.97584 0.92509 0.92631 0.92463 0.91174 0.91064 0.86458 0.86217 0.86304 0.88014 0.87914 0.91203 0.91239 0.77338 0.93266 0.93218 0.91383 0.92878 0.92636 0.90933 0.93296 0.91851 0.92022 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.08 -0.74 6.07 -27.88 -0.17 -0.91 16 3 C -0.08 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 6 C -0.11 -1.35 9.70 -39.59 -0.38 -1.73 16 7 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 8 C -0.10 -1.28 4.83 -29.03 -0.14 -1.42 16 9 C 0.53 8.39 7.84 -10.99 -0.09 8.30 16 10 O -0.55 -10.38 16.36 5.56 0.09 -10.29 16 11 N -0.61 -9.60 3.32 -170.38 -0.57 -10.17 16 12 C 0.07 1.15 6.07 -2.41 -0.01 1.14 16 13 C 0.18 3.29 2.97 -65.67 -0.19 3.09 16 14 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 15 N -0.71 -16.01 5.15 -51.24 -0.26 -16.28 16 16 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 20 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.09 -1.36 0.85 -152.68 -0.13 -1.49 16 25 C -0.13 -1.85 8.49 37.16 0.32 -1.53 16 26 C -0.13 -2.08 7.55 37.16 0.28 -1.80 16 27 C 0.12 1.85 6.04 -3.06 -0.02 1.83 16 28 C -0.10 -1.27 9.36 -39.58 -0.37 -1.64 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 38 H 0.10 1.17 7.80 -51.93 -0.40 0.76 16 39 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 40 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 41 H 0.39 9.31 5.45 -40.82 -0.22 9.09 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 46 H 0.05 0.89 7.42 -51.93 -0.39 0.51 16 47 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 48 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 50 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 51 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 408.99 15.07 6.16 6.16 Total: -1.00 -30.08 408.99 -10.28 -40.36 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.83 Total: 9.41 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.57 Total: -9.73 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.11 Total: -52.12 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.08 -10.28 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995972526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.145 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds