Wall clock time and date at job start Tue Mar 31 2020 16:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38256 * 119.99970 * 90.00125 * 3 2 1 5 5 C 1.38215 * 119.99593 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00251 * 0.02617 * 5 4 3 7 7 C 1.38210 * 120.00038 * 359.97145 * 6 5 4 8 8 C 1.50702 * 119.99867 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47381 * 90.00526 * 8 7 6 10 10 O 1.21282 * 119.99298 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00321 * 180.02562 * 9 8 7 12 12 C 1.47429 * 125.64479 * 359.68924 * 11 9 8 13 13 C 1.55129 * 104.71850 * 155.82037 * 12 11 9 14 14 H 1.09000 * 111.22224 * 279.17304 * 13 12 11 15 15 N 1.46494 * 110.90545 * 155.27750 * 13 12 11 16 16 C 1.36934 * 120.00627 * 92.97078 * 15 13 12 17 17 H 1.08002 * 119.99615 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00267 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00174 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00120 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47011 * 60.00069 * 20 18 16 22 22 H 1.48498 * 109.47277 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46987 * 300.00393 * 20 18 16 24 24 C 1.55151 * 101.49035 * 37.29283 * 13 12 11 25 25 C 1.52997 * 110.72283 * 205.96993 * 24 13 12 26 26 C 1.52998 * 110.71851 * 82.69270 * 24 13 12 27 27 C 1.47018 * 125.64843 * 179.97438 * 11 9 8 28 28 C 1.38210 * 119.99871 * 269.72984 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07998 * 120.00297 * 0.02562 * 4 3 2 35 35 H 1.07998 * 119.99659 * 180.02562 * 5 4 3 36 36 H 1.08002 * 120.00259 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.46846 * 210.00069 * 8 7 6 38 38 H 1.09001 * 109.47336 * 329.99890 * 8 7 6 39 39 H 1.09004 * 110.36400 * 274.74468 * 12 11 9 40 40 H 1.08994 * 110.36885 * 37.06791 * 12 11 9 41 41 H 0.97008 * 119.99654 * 272.97279 * 15 13 12 42 42 H 0.97000 * 120.00303 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47235 * 174.97201 * 25 24 13 44 44 H 1.08995 * 109.46896 * 294.97501 * 25 24 13 45 45 H 1.09003 * 109.46997 * 54.97843 * 25 24 13 46 46 H 1.08999 * 109.47505 * 305.02502 * 26 24 13 47 47 H 1.09000 * 109.46709 * 65.03043 * 26 24 13 48 48 H 1.09008 * 109.47189 * 185.02539 * 26 24 13 49 49 H 1.09003 * 109.88187 * 300.43939 * 27 11 9 50 50 H 1.09001 * 109.88108 * 61.44918 * 27 11 9 51 51 H 1.08001 * 120.00230 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7239 3.3755 1.1972 6 6 2.9542 4.0273 -0.0001 7 6 2.7239 3.3757 -1.1970 8 6 2.9745 4.0864 -2.5021 9 6 4.3977 3.8502 -2.9376 10 8 5.1360 3.1720 -2.2550 11 7 4.8504 4.3934 -4.0849 12 6 4.0630 5.2301 -5.0087 13 6 5.1168 6.0787 -5.7675 14 1 5.4356 6.9352 -5.1735 15 7 4.6021 6.5089 -7.0699 16 6 3.9801 7.7225 -7.1935 17 1 3.8685 8.3624 -6.3306 18 6 3.4920 8.1299 -8.4274 19 7 3.6266 7.3494 -9.4786 20 14 2.6428 9.7852 -8.5958 21 1 3.5841 10.8661 -8.2078 22 1 2.2162 9.9816 -10.0046 23 1 1.4525 9.8233 -7.7088 24 6 6.2727 5.0576 -5.9360 25 6 7.6169 5.7774 -6.0620 26 6 6.0250 4.1544 -7.1458 27 6 6.2096 4.2450 -4.6255 28 6 2.2679 2.0705 -1.1969 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0832 1.5634 2.1327 35 1 2.9043 3.8845 2.1325 36 1 3.3142 5.0455 -0.0002 37 1 2.2937 3.7020 -3.2616 38 1 2.8070 5.1555 -2.3717 39 1 3.5041 4.6042 -5.7045 40 1 3.3858 5.8769 -4.4511 41 1 4.7020 5.9339 -7.8448 42 1 3.2858 7.6341 -10.3410 43 1 8.4214 5.0425 -6.0895 44 1 7.6298 6.3647 -6.9801 45 1 7.7571 6.4377 -5.2062 46 1 5.0497 3.6773 -7.0496 47 1 6.0486 4.7527 -8.0567 48 1 6.8004 3.3897 -7.1932 49 1 6.9366 4.6340 -3.9125 50 1 6.4151 3.1939 -4.8282 51 1 2.0925 1.5598 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995972526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:25 Heat of formation + Delta-G solvation = -28.649852 kcal Electronic energy + Delta-G solvation = -28320.448165 eV Core-core repulsion = 24604.467138 eV Total energy + Delta-G solvation = -3715.981028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.47356 -40.39143 -39.14356 -35.85986 -35.33809 -34.62993 -33.29453 -32.62885 -30.43959 -29.27000 -29.02407 -28.28160 -26.75155 -25.77574 -24.79554 -23.24397 -22.81113 -21.50680 -20.20884 -19.87894 -19.18544 -18.01187 -17.43265 -17.27236 -16.65099 -16.59378 -16.15499 -15.88818 -15.51801 -15.40816 -15.03072 -14.69034 -14.53526 -14.40386 -14.37329 -14.13910 -14.00794 -13.79673 -13.40768 -13.35162 -13.02554 -12.96460 -12.85446 -12.83323 -12.72980 -12.59810 -12.57471 -12.17331 -12.13125 -12.04852 -11.86114 -11.70116 -11.63917 -11.52817 -11.32029 -11.00863 -10.85327 -9.69029 -9.66995 -9.50104 -8.99575 -7.91744 -5.20332 0.41637 0.50771 1.52137 1.52938 1.58872 1.59483 2.00139 2.59066 2.85824 3.38258 3.43559 3.66662 3.76232 3.82070 3.87839 3.92962 3.99434 4.15451 4.22199 4.25246 4.31932 4.35558 4.41957 4.44963 4.49811 4.55706 4.58275 4.67597 4.69372 4.76939 4.79410 4.84217 4.86749 5.00396 5.02373 5.05981 5.08649 5.15863 5.19459 5.20203 5.22171 5.33066 5.38522 5.42915 5.50037 5.57156 5.57565 5.66812 5.72833 6.13861 6.29629 6.52238 7.12686 7.38331 8.10689 8.35673 9.30930 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.002652 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.329694 B =10556.282827 C =11440.214173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.128 4.128 7 C -0.074 4.074 8 C -0.095 4.095 9 C 0.528 3.472 10 O -0.578 6.578 11 N -0.612 5.612 12 C 0.084 3.916 13 C 0.173 3.827 14 H 0.065 0.935 15 N -0.719 5.719 16 C -0.241 4.241 17 H 0.078 0.922 18 C -0.068 4.068 19 N -0.966 5.966 20 Si 0.966 3.034 21 H -0.280 1.280 22 H -0.300 1.300 23 H -0.278 1.278 24 C -0.079 4.079 25 C -0.125 4.125 26 C -0.128 4.128 27 C 0.124 3.876 28 C -0.121 4.121 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.382 0.618 42 H 0.250 0.750 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -11.262 18.501 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.146 4.146 7 C -0.074 4.074 8 C -0.134 4.134 9 C 0.318 3.682 10 O -0.458 6.458 11 N -0.345 5.345 12 C -0.042 4.042 13 C 0.062 3.938 14 H 0.083 0.917 15 N -0.359 5.359 16 C -0.373 4.373 17 H 0.096 0.904 18 C -0.260 4.260 19 N -0.616 5.616 20 Si 0.796 3.204 21 H -0.207 1.207 22 H -0.227 1.227 23 H -0.204 1.204 24 C -0.080 4.080 25 C -0.182 4.182 26 C -0.185 4.185 27 C 0.001 3.999 28 C -0.140 4.140 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.217 0.783 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.487 -11.467 18.930 22.182 hybrid contribution -0.420 0.868 -1.005 1.392 sum -1.907 -10.599 17.926 20.912 Atomic orbital electron populations 1.21720 0.93886 1.02437 1.01954 1.20580 0.96801 0.91421 1.03327 1.20139 0.98767 0.97204 0.92907 1.21299 0.99973 0.95067 0.98115 1.21380 0.99025 0.95296 0.98294 1.21192 1.00336 1.00654 0.92384 1.19433 0.99274 0.94753 0.93976 1.20675 0.92800 1.03569 0.96357 1.20619 0.90143 0.78414 0.79037 1.90672 1.59598 1.40998 1.54516 1.48527 1.13619 1.50697 1.21631 1.23261 0.95982 0.93121 0.91788 1.21531 0.91071 0.94049 0.87109 0.91738 1.42532 1.68188 1.19376 1.05838 1.19581 1.28153 0.95149 0.94369 0.90416 1.25446 1.03215 1.01637 0.95748 1.69785 1.53144 1.38784 0.99892 0.85321 0.78688 0.80344 0.76037 1.20678 1.22684 1.20373 1.21806 0.96849 0.95426 0.93953 1.21650 0.94715 1.00002 1.01860 1.21645 1.01406 0.98668 0.96797 1.22009 0.83790 0.99936 0.94195 1.21019 1.00467 0.94127 0.98344 0.91086 0.92381 0.93281 0.89890 0.91270 0.84087 0.83983 0.85687 0.86905 0.86498 0.91971 0.90229 0.78296 0.94072 0.90885 0.93263 0.92222 0.93482 0.93150 0.90901 0.91337 0.91620 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.08 -1.33 6.07 29.85 0.18 -1.15 16 3 C -0.09 -1.90 5.13 -19.87 -0.10 -2.00 16 4 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 5 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 6 C -0.13 -3.01 9.70 22.27 0.22 -2.80 16 7 C -0.07 -1.87 4.37 -19.87 -0.09 -1.96 16 8 C -0.09 -2.32 4.83 29.10 0.14 -2.18 16 9 C 0.53 16.26 7.84 87.66 0.69 16.95 16 10 O -0.58 -21.56 16.36 -3.04 -0.05 -21.61 16 11 N -0.61 -18.42 3.32 -811.34 -2.70 -21.12 16 12 C 0.08 2.67 6.07 86.93 0.53 3.20 16 13 C 0.17 6.17 2.97 46.46 0.14 6.31 16 14 H 0.06 2.36 7.99 -2.39 -0.02 2.34 16 15 N -0.72 -32.55 5.15 -316.04 -1.63 -34.17 16 16 C -0.24 -12.25 9.96 84.03 0.84 -11.41 16 17 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 18 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 19 N -0.97 -55.89 13.06 21.65 0.28 -55.61 16 20 Si 0.97 43.81 29.55 68.60 2.03 45.84 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.08 -2.37 0.85 -51.00 -0.04 -2.41 16 25 C -0.12 -3.41 8.49 71.98 0.61 -2.80 16 26 C -0.13 -3.90 7.55 71.98 0.54 -3.36 16 27 C 0.12 3.57 6.04 86.73 0.52 4.10 16 28 C -0.12 -2.96 9.36 22.27 0.21 -2.75 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 33 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.11 2.47 8.09 -2.39 -0.02 2.46 16 38 H 0.12 2.49 7.80 -2.39 -0.02 2.47 16 39 H 0.06 2.10 7.69 -2.38 -0.02 2.08 16 40 H 0.08 2.36 7.48 -2.39 -0.02 2.34 16 41 H 0.38 18.58 5.45 -92.70 -0.51 18.07 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 46 H 0.05 1.50 7.42 -2.39 -0.02 1.48 16 47 H 0.05 1.78 6.75 -2.39 -0.02 1.76 16 48 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.07 1.94 7.82 -2.39 -0.02 1.92 16 50 H 0.07 1.88 7.85 -2.39 -0.02 1.86 16 51 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -64.18 408.99 4.33 -59.86 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 0.39 Total: 37.98 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 6.00 Total: -11.17 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.04 Total: -110.90 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.18 4.33 -59.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995972526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.206 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds