Wall clock time and date at job start Tue Mar 31 2020 16:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47055 * 2 1 4 4 C 1.38255 * 120.00276 * 90.00030 * 3 2 1 5 5 C 1.38208 * 120.00307 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.99901 * 359.95380 * 5 4 3 7 7 C 1.38214 * 120.00083 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00080 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47143 * 90.00299 * 8 7 6 10 10 O 1.21275 * 119.99961 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99872 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64981 * 0.02817 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.82520 * 12 11 9 14 14 H 1.09000 * 110.72188 * 96.24097 * 13 12 11 15 15 N 1.46495 * 110.72250 * 219.52320 * 13 12 11 16 16 C 1.36934 * 119.99717 * 273.54393 * 15 13 12 17 17 H 1.08002 * 120.00471 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99836 * 180.02562 * 16 15 13 19 19 N 1.31613 * 120.00160 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99860 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47550 * 89.99710 * 20 18 16 22 22 H 1.48503 * 109.46790 * 209.99816 * 20 18 16 23 23 H 1.48504 * 109.47100 * 329.99312 * 20 18 16 24 24 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 25 25 C 1.53000 * 110.89394 * 277.26684 * 24 13 12 26 26 C 1.52998 * 111.06990 * 153.48436 * 24 13 12 27 27 C 1.47426 * 125.64500 * 179.97438 * 11 9 8 28 28 C 1.38213 * 119.99561 * 270.23262 * 3 2 1 29 29 H 1.09000 * 109.47324 * 299.99617 * 1 2 3 30 30 H 1.09002 * 109.47549 * 59.99799 * 1 2 3 31 31 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47381 * 239.99896 * 2 1 3 33 33 H 1.08999 * 109.47236 * 119.99773 * 2 1 3 34 34 H 1.07999 * 119.99731 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00224 * 179.97438 * 5 4 3 36 36 H 1.08002 * 120.00044 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.46955 * 329.99842 * 8 7 6 38 38 H 1.09007 * 109.46827 * 210.00522 * 8 7 6 39 39 H 1.09002 * 109.88241 * 298.32048 * 12 11 9 40 40 H 1.09000 * 109.88049 * 59.33177 * 12 11 9 41 41 H 0.96997 * 120.00433 * 93.54551 * 15 13 12 42 42 H 0.97005 * 120.00291 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47124 * 173.68399 * 25 24 13 44 44 H 1.09000 * 109.46711 * 293.68751 * 25 24 13 45 45 H 1.08996 * 109.47179 * 53.68650 * 25 24 13 46 46 H 1.08997 * 109.47394 * 306.20721 * 26 24 13 47 47 H 1.08994 * 109.47153 * 66.21219 * 26 24 13 48 48 H 1.09004 * 109.47185 * 186.21200 * 26 24 13 49 49 H 1.08999 * 110.36956 * 323.01018 * 27 11 9 50 50 H 1.09001 * 110.36709 * 85.22211 * 27 11 9 51 51 H 1.08000 * 120.00665 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7229 3.3759 1.1973 6 6 2.9537 4.0275 0.0000 7 6 2.7237 3.3758 -1.1970 8 6 2.9748 4.0862 -2.5021 9 6 4.3981 3.8499 -2.9370 10 8 5.1359 3.1711 -2.2547 11 7 4.8509 4.3922 -4.0848 12 6 4.0677 5.2312 -5.0035 13 6 5.0017 5.6456 -6.1600 14 1 4.8763 4.9804 -7.0144 15 7 4.7624 7.0384 -6.5460 16 6 3.7864 7.3378 -7.4587 17 1 3.1934 6.5472 -7.8943 18 6 3.5599 8.6575 -7.8249 19 7 4.2828 9.6210 -7.2944 20 14 2.2281 9.0660 -9.0694 21 1 0.9445 9.3026 -8.3612 22 1 2.6113 10.2881 -9.8211 23 1 2.0700 7.9323 -10.0154 24 6 6.4160 5.4793 -5.5377 25 6 6.7981 6.7109 -4.7143 26 6 7.4627 5.1992 -6.6179 27 6 6.2139 4.2431 -4.6264 28 6 2.2580 2.0739 -1.1970 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0831 1.5634 2.1326 35 1 2.9025 3.8851 2.1326 36 1 3.3137 5.0457 -0.0001 37 1 2.8073 5.1553 -2.3719 38 1 2.2941 3.7018 -3.2618 39 1 3.2228 4.6641 -5.3944 40 1 3.7088 6.1179 -4.4810 41 1 5.2951 7.7484 -6.1551 42 1 4.1243 10.5432 -7.5500 43 1 7.7404 6.5253 -4.1989 44 1 6.9086 7.5702 -5.3757 45 1 6.0172 6.9146 -3.9815 46 1 7.1471 4.3451 -7.2170 47 1 7.5663 6.0744 -7.2591 48 1 8.4207 4.9783 -6.1470 49 1 6.9454 4.2437 -3.8183 50 1 6.2928 3.3244 -5.2077 51 1 2.0740 1.5663 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995972552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:30 Heat of formation + Delta-G solvation = -14.065126 kcal Electronic energy + Delta-G solvation = -28391.193036 eV Core-core repulsion = 24675.844449 eV Total energy + Delta-G solvation = -3715.348587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.23997 -39.37945 -37.82171 -34.54079 -34.11658 -33.21581 -32.34103 -30.84922 -29.63614 -28.18731 -27.48950 -27.00684 -25.64455 -24.07258 -23.94405 -22.18307 -21.47369 -20.56383 -18.99701 -18.52130 -17.26602 -16.72810 -16.54922 -16.10219 -15.56659 -15.26713 -14.89164 -14.66996 -14.13835 -14.03962 -13.87678 -13.72941 -13.60238 -13.22064 -13.09351 -12.88689 -12.72757 -12.53532 -12.22972 -12.17624 -12.07702 -11.84345 -11.81582 -11.55728 -11.39985 -11.24817 -11.07740 -10.96227 -10.93405 -10.85524 -10.57946 -10.49838 -10.25795 -9.92394 -9.74698 -9.62859 -9.02849 -8.79366 -8.61629 -8.29521 -7.11820 -5.88490 -3.18827 1.31781 1.38916 2.86324 3.24093 3.36685 3.42753 3.43999 3.78594 4.49146 4.56850 4.62286 4.70751 4.79151 4.97820 5.06218 5.06695 5.10513 5.14981 5.18011 5.23631 5.34480 5.44509 5.48492 5.52451 5.56502 5.58225 5.69296 5.70972 5.72626 5.78167 5.84165 5.93712 5.97437 6.00525 6.04417 6.07579 6.12869 6.23080 6.31511 6.35797 6.40762 6.44152 6.54001 6.59652 6.60891 6.63574 6.71713 6.87255 6.99288 7.60195 7.82690 8.29575 8.40859 9.41993 9.96352 10.31495 11.33560 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002718 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.886629 B =10297.609616 C =11306.603116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.109 4.109 7 C -0.055 4.055 8 C -0.101 4.101 9 C 0.529 3.471 10 O -0.547 6.547 11 N -0.612 5.612 12 C 0.072 3.928 13 C 0.181 3.819 14 H 0.065 0.935 15 N -0.712 5.712 16 C -0.248 4.248 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.086 4.086 25 C -0.131 4.131 26 C -0.128 4.128 27 C 0.119 3.881 28 C -0.103 4.103 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.390 0.610 42 H 0.257 0.743 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -14.722 12.745 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.127 4.127 7 C -0.055 4.055 8 C -0.140 4.140 9 C 0.317 3.683 10 O -0.425 6.425 11 N -0.345 5.345 12 C -0.054 4.054 13 C 0.069 3.931 14 H 0.083 0.917 15 N -0.353 5.353 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.088 4.088 25 C -0.188 4.188 26 C -0.186 4.186 27 C -0.004 4.004 28 C -0.121 4.121 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.227 0.773 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.082 0.918 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.144 -15.061 13.014 20.020 hybrid contribution -0.680 0.674 -0.596 1.127 sum -2.823 -14.388 12.418 19.214 Atomic orbital electron populations 1.21747 0.94793 1.01554 1.02247 1.20526 0.96074 0.92796 1.02766 1.19805 0.99404 0.96058 0.93106 1.20948 1.00774 0.95027 0.97276 1.21049 0.99688 0.94958 0.97788 1.20984 0.99700 1.00068 0.91992 1.19311 0.98210 0.94271 0.93745 1.20659 0.94818 1.02678 0.95860 1.20099 0.89252 0.79334 0.79602 1.90687 1.58464 1.39664 1.53655 1.48518 1.13600 1.50678 1.21743 1.23341 0.95940 0.93736 0.92388 1.21251 0.89776 0.89028 0.93059 0.91693 1.42494 1.42137 1.00784 1.49918 1.19246 1.10394 0.92017 1.16233 0.91041 1.24749 0.99632 0.95716 1.00347 1.69650 1.42102 0.99442 1.46504 0.86203 0.81445 0.77638 0.80941 1.21634 1.21754 1.20684 1.22024 0.96908 0.94480 0.95364 1.21630 1.00312 0.97338 0.99548 1.21636 0.97137 1.02142 0.97695 1.22269 0.83894 0.97582 0.96668 1.20829 0.99767 0.93970 0.97546 0.92620 0.92479 0.92527 0.91089 0.91177 0.86468 0.86205 0.86272 0.87863 0.88086 0.92336 0.90821 0.77341 0.93337 0.93384 0.91123 0.92649 0.92773 0.91424 0.93138 0.90988 0.91839 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.15 0.37 -0.74 16 2 C -0.08 -0.74 6.06 -27.89 -0.17 -0.90 16 3 C -0.08 -0.94 5.13 -104.62 -0.54 -1.48 16 4 C -0.12 -1.32 9.70 -39.59 -0.38 -1.71 16 5 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 6 C -0.11 -1.39 9.70 -39.58 -0.38 -1.77 16 7 C -0.05 -0.73 4.37 -104.62 -0.46 -1.19 16 8 C -0.10 -1.31 5.02 -29.04 -0.15 -1.46 16 9 C 0.53 8.48 7.84 -10.99 -0.09 8.39 16 10 O -0.55 -10.42 16.29 5.56 0.09 -10.33 16 11 N -0.61 -9.60 3.31 -170.52 -0.57 -10.17 16 12 C 0.07 1.18 5.85 -3.07 -0.02 1.17 16 13 C 0.18 3.27 2.87 -65.96 -0.19 3.08 16 14 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 15 N -0.71 -16.12 5.08 -51.52 -0.26 -16.38 16 16 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.51 13.06 55.49 0.72 -25.78 16 20 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.09 -1.34 0.88 -152.23 -0.13 -1.47 16 25 C -0.13 -2.10 7.72 37.16 0.29 -1.81 16 26 C -0.13 -1.80 8.67 37.16 0.32 -1.48 16 27 C 0.12 1.79 5.84 -2.53 -0.01 1.77 16 28 C -0.10 -1.29 9.36 -39.58 -0.37 -1.66 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 38 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.39 9.40 5.43 -40.82 -0.22 9.18 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.25 6.74 -51.93 -0.35 0.90 16 45 H 0.05 0.94 7.81 -51.93 -0.41 0.54 16 46 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 50 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 51 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 410.86 15.07 6.19 6.19 Total: -1.00 -30.17 410.86 -10.34 -40.51 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.94 Total: 9.49 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.56 Total: -9.76 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.10 Total: -52.33 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.17 -10.34 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995972552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.444 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds