Wall clock time and date at job start Tue Mar 31 2020 16:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47055 * 2 1 4 4 C 1.38255 * 120.00276 * 90.00030 * 3 2 1 5 5 C 1.38208 * 120.00307 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.99901 * 359.95380 * 5 4 3 7 7 C 1.38214 * 120.00083 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00080 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47143 * 90.00299 * 8 7 6 10 10 O 1.21275 * 119.99961 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99872 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64981 * 0.02817 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.82520 * 12 11 9 14 14 H 1.09000 * 110.72188 * 96.24097 * 13 12 11 15 15 N 1.46495 * 110.72250 * 219.52320 * 13 12 11 16 16 C 1.36934 * 119.99717 * 273.54393 * 15 13 12 17 17 H 1.08002 * 120.00471 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99836 * 180.02562 * 16 15 13 19 19 N 1.31613 * 120.00160 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99860 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47550 * 89.99710 * 20 18 16 22 22 H 1.48503 * 109.46790 * 209.99816 * 20 18 16 23 23 H 1.48504 * 109.47100 * 329.99312 * 20 18 16 24 24 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 25 25 C 1.53000 * 110.89394 * 277.26684 * 24 13 12 26 26 C 1.52998 * 111.06990 * 153.48436 * 24 13 12 27 27 C 1.47426 * 125.64500 * 179.97438 * 11 9 8 28 28 C 1.38213 * 119.99561 * 270.23262 * 3 2 1 29 29 H 1.09000 * 109.47324 * 299.99617 * 1 2 3 30 30 H 1.09002 * 109.47549 * 59.99799 * 1 2 3 31 31 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47381 * 239.99896 * 2 1 3 33 33 H 1.08999 * 109.47236 * 119.99773 * 2 1 3 34 34 H 1.07999 * 119.99731 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00224 * 179.97438 * 5 4 3 36 36 H 1.08002 * 120.00044 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.46955 * 329.99842 * 8 7 6 38 38 H 1.09007 * 109.46827 * 210.00522 * 8 7 6 39 39 H 1.09002 * 109.88241 * 298.32048 * 12 11 9 40 40 H 1.09000 * 109.88049 * 59.33177 * 12 11 9 41 41 H 0.96997 * 120.00433 * 93.54551 * 15 13 12 42 42 H 0.97005 * 120.00291 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47124 * 173.68399 * 25 24 13 44 44 H 1.09000 * 109.46711 * 293.68751 * 25 24 13 45 45 H 1.08996 * 109.47179 * 53.68650 * 25 24 13 46 46 H 1.08997 * 109.47394 * 306.20721 * 26 24 13 47 47 H 1.08994 * 109.47153 * 66.21219 * 26 24 13 48 48 H 1.09004 * 109.47185 * 186.21200 * 26 24 13 49 49 H 1.08999 * 110.36956 * 323.01018 * 27 11 9 50 50 H 1.09001 * 110.36709 * 85.22211 * 27 11 9 51 51 H 1.08000 * 120.00665 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1973 5 6 2.7229 3.3759 1.1973 6 6 2.9537 4.0275 0.0000 7 6 2.7237 3.3758 -1.1970 8 6 2.9748 4.0862 -2.5021 9 6 4.3981 3.8499 -2.9370 10 8 5.1359 3.1711 -2.2547 11 7 4.8509 4.3922 -4.0848 12 6 4.0677 5.2312 -5.0035 13 6 5.0017 5.6456 -6.1600 14 1 4.8763 4.9804 -7.0144 15 7 4.7624 7.0384 -6.5460 16 6 3.7864 7.3378 -7.4587 17 1 3.1934 6.5472 -7.8943 18 6 3.5599 8.6575 -7.8249 19 7 4.2828 9.6210 -7.2944 20 14 2.2281 9.0660 -9.0694 21 1 0.9445 9.3026 -8.3612 22 1 2.6113 10.2881 -9.8211 23 1 2.0700 7.9323 -10.0154 24 6 6.4160 5.4793 -5.5377 25 6 6.7981 6.7109 -4.7143 26 6 7.4627 5.1992 -6.6179 27 6 6.2139 4.2431 -4.6264 28 6 2.2580 2.0739 -1.1970 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0831 1.5634 2.1326 35 1 2.9025 3.8851 2.1326 36 1 3.3137 5.0457 -0.0001 37 1 2.8073 5.1553 -2.3719 38 1 2.2941 3.7018 -3.2618 39 1 3.2228 4.6641 -5.3944 40 1 3.7088 6.1179 -4.4810 41 1 5.2951 7.7484 -6.1551 42 1 4.1243 10.5432 -7.5500 43 1 7.7404 6.5253 -4.1989 44 1 6.9086 7.5702 -5.3757 45 1 6.0172 6.9146 -3.9815 46 1 7.1471 4.3451 -7.2170 47 1 7.5663 6.0744 -7.2591 48 1 8.4207 4.9783 -6.1470 49 1 6.9454 4.2437 -3.8183 50 1 6.2928 3.3244 -5.2077 51 1 2.0740 1.5663 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995972552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:29 Heat of formation + Delta-G solvation = -28.561767 kcal Electronic energy + Delta-G solvation = -28391.821658 eV Core-core repulsion = 24675.844449 eV Total energy + Delta-G solvation = -3715.977208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47099 -40.38989 -39.12184 -35.84355 -35.33775 -34.60082 -33.29549 -32.63669 -30.43767 -29.31876 -28.97766 -28.28310 -26.79438 -25.78231 -24.79498 -23.23154 -22.76330 -21.48952 -20.31580 -19.81322 -19.11258 -18.01979 -17.47743 -17.27671 -16.64086 -16.57554 -16.18595 -15.87103 -15.63490 -15.41486 -15.04680 -14.64057 -14.52084 -14.48122 -14.28429 -14.03990 -13.86844 -13.80025 -13.51350 -13.40081 -13.03047 -12.97148 -12.88052 -12.84631 -12.75218 -12.59619 -12.53653 -12.17939 -12.08829 -12.06477 -11.87155 -11.69311 -11.64071 -11.51041 -11.32162 -11.00748 -10.86463 -9.69540 -9.62013 -9.50789 -9.01646 -7.91711 -5.20386 0.41150 0.50056 1.51642 1.52091 1.59682 1.60036 2.01845 2.58952 2.85316 3.38718 3.43077 3.66433 3.78471 3.81298 3.82518 3.92887 3.99037 4.18353 4.21888 4.25175 4.31993 4.34935 4.43077 4.45567 4.50014 4.55590 4.57698 4.67919 4.69017 4.76525 4.79605 4.84589 4.89564 5.00817 5.02429 5.07890 5.09293 5.15090 5.18988 5.21562 5.23749 5.31121 5.39226 5.41525 5.51394 5.56560 5.58024 5.66496 5.72241 6.13208 6.29710 6.53079 7.13177 7.38290 8.11279 8.35460 9.31345 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002718 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.886629 B =10297.609616 C =11306.603116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.073 4.073 8 C -0.095 4.095 9 C 0.528 3.472 10 O -0.577 6.577 11 N -0.610 5.610 12 C 0.085 3.915 13 C 0.173 3.827 14 H 0.068 0.932 15 N -0.722 5.722 16 C -0.238 4.238 17 H 0.080 0.920 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.966 3.034 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.269 1.269 24 C -0.078 4.078 25 C -0.125 4.125 26 C -0.124 4.124 27 C 0.121 3.879 28 C -0.120 4.120 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.380 0.620 42 H 0.250 0.750 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 -16.869 13.287 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.149 4.149 7 C -0.074 4.074 8 C -0.134 4.134 9 C 0.318 3.682 10 O -0.458 6.458 11 N -0.343 5.343 12 C -0.041 4.041 13 C 0.063 3.937 14 H 0.086 0.914 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.618 5.618 20 Si 0.796 3.204 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.194 1.194 24 C -0.079 4.079 25 C -0.182 4.182 26 C -0.182 4.182 27 C -0.002 4.002 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.215 0.785 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.763 -17.262 13.552 22.119 hybrid contribution -0.446 1.246 -0.692 1.494 sum -3.210 -16.015 12.860 20.789 Atomic orbital electron populations 1.21722 0.93887 1.02456 1.01951 1.20576 0.96778 0.91297 1.03408 1.20156 0.98689 0.97226 0.92854 1.21296 0.99979 0.94946 0.98227 1.21364 0.99089 0.95387 0.98173 1.21179 1.00564 1.00501 0.92613 1.19430 0.99206 0.94888 0.93843 1.20662 0.93102 1.03177 0.96499 1.20559 0.90108 0.78491 0.78996 1.90667 1.59564 1.41117 1.54422 1.48530 1.13778 1.50330 1.21700 1.23007 0.95823 0.93545 0.91676 1.21439 0.91853 0.86697 0.93722 0.91402 1.42610 1.41538 1.02478 1.49617 1.19627 1.09929 0.92032 1.15367 0.90211 1.25460 1.02064 0.95969 1.02746 1.69799 1.44159 0.99323 1.48502 0.85244 0.78976 0.77134 0.79008 1.21651 1.22824 1.19369 1.21969 0.95868 0.94468 0.95634 1.21555 1.00864 0.96884 0.98918 1.21605 0.97749 1.01737 0.97089 1.22302 0.83590 0.97707 0.96574 1.21023 1.00323 0.93957 0.98462 0.92495 0.93204 0.91033 0.91077 0.89918 0.84047 0.84138 0.86180 0.87304 0.86513 0.90941 0.92314 0.78452 0.94144 0.91298 0.93203 0.94157 0.91553 0.93323 0.90901 0.91062 0.90319 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.08 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.88 5.13 -19.87 -0.10 -1.98 16 4 C -0.13 -2.51 9.70 22.27 0.22 -2.30 16 5 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 6 C -0.13 -3.27 9.70 22.27 0.22 -3.05 16 7 C -0.07 -1.91 4.37 -19.86 -0.09 -2.00 16 8 C -0.10 -2.42 5.02 29.10 0.15 -2.27 16 9 C 0.53 16.54 7.84 87.66 0.69 17.23 16 10 O -0.58 -21.70 16.29 -3.01 -0.05 -21.75 16 11 N -0.61 -18.46 3.31 -811.81 -2.69 -21.15 16 12 C 0.09 2.72 5.85 86.73 0.51 3.23 16 13 C 0.17 6.11 2.87 46.27 0.13 6.24 16 14 H 0.07 2.38 8.00 -2.39 -0.02 2.36 16 15 N -0.72 -32.78 5.08 -316.92 -1.61 -34.39 16 16 C -0.24 -12.08 9.98 84.03 0.84 -11.24 16 17 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 19 N -0.97 -56.39 13.06 21.65 0.28 -56.10 16 20 Si 0.97 43.91 29.55 68.60 2.03 45.93 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 C -0.08 -2.33 0.88 -50.70 -0.04 -2.38 16 25 C -0.12 -3.98 7.72 71.98 0.56 -3.43 16 26 C -0.12 -3.27 8.67 71.98 0.62 -2.65 16 27 C 0.12 3.43 5.84 86.85 0.51 3.94 16 28 C -0.12 -2.90 9.36 22.27 0.21 -2.69 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 33 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.11 2.61 8.09 -2.39 -0.02 2.59 16 38 H 0.12 2.54 8.08 -2.38 -0.02 2.52 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 41 H 0.38 18.75 5.43 -92.71 -0.50 18.25 16 42 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.80 6.74 -2.39 -0.02 1.78 16 45 H 0.04 1.38 7.81 -2.39 -0.02 1.36 16 46 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 49 H 0.07 2.07 7.95 -2.39 -0.02 2.06 16 50 H 0.08 2.03 8.04 -2.39 -0.02 2.01 16 51 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -64.65 410.86 4.34 -60.31 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.39 Total: 38.47 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 5.99 Total: -11.32 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.02 Total: -111.65 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.65 4.34 -60.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995972552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.753 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds