Wall clock time and date at job start Tue Mar 31 2020 16:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47261 * 2 1 4 4 C 1.38231 * 119.99993 * 89.99696 * 3 2 1 5 5 C 1.38236 * 119.99961 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.00045 * 359.95547 * 5 4 3 7 7 C 1.50699 * 119.99942 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46851 * 90.00532 * 7 6 5 9 9 O 1.21288 * 119.99967 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00028 * 180.02562 * 8 7 6 11 11 C 1.47015 * 125.64542 * 359.97194 * 10 8 7 12 12 C 1.54326 * 107.26874 * 178.97766 * 11 10 8 13 13 H 1.09006 * 110.72052 * 219.26285 * 12 11 10 14 14 N 1.46499 * 110.71990 * 96.17055 * 12 11 10 15 15 C 1.36935 * 119.99938 * 88.84036 * 14 12 11 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 12 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.55150 * 103.10450 * 337.71613 * 12 11 10 24 24 C 1.53002 * 111.00872 * 153.66449 * 23 12 11 25 25 C 1.53001 * 111.00401 * 277.52054 * 23 12 11 26 26 C 1.47422 * 125.64828 * 180.02562 * 10 8 7 27 27 C 1.38233 * 119.99424 * 0.27959 * 6 5 4 28 28 C 1.38234 * 119.99790 * 270.02387 * 3 2 1 29 29 H 1.09003 * 109.47351 * 60.00321 * 1 2 3 30 30 H 1.09003 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46928 * 300.00010 * 1 2 3 32 32 H 1.09006 * 109.47285 * 239.99688 * 2 1 3 33 33 H 1.09000 * 109.47010 * 120.00078 * 2 1 3 34 34 H 1.07994 * 120.00108 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00139 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.47250 * 330.00746 * 7 6 5 37 37 H 1.09000 * 109.46951 * 209.99750 * 7 6 5 38 38 H 1.09002 * 109.88429 * 59.55994 * 11 10 8 39 39 H 1.09001 * 109.88384 * 298.39412 * 11 10 8 40 40 H 0.96999 * 119.99984 * 268.83971 * 14 12 11 41 41 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46671 * 59.99550 * 24 23 12 43 43 H 1.08997 * 109.47197 * 180.02562 * 24 23 12 44 44 H 1.09006 * 109.46722 * 300.00736 * 24 23 12 45 45 H 1.08999 * 109.47492 * 59.99793 * 25 23 12 46 46 H 1.09007 * 109.46708 * 180.02562 * 25 23 12 47 47 H 1.08996 * 109.46870 * 299.99365 * 25 23 12 48 48 H 1.09000 * 110.36851 * 322.92863 * 26 10 8 49 49 H 1.09002 * 110.36289 * 85.25280 * 26 10 8 50 50 H 1.08008 * 119.99382 * 179.72865 * 27 6 5 51 51 H 1.08006 * 120.00297 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3759 1.1971 6 6 2.9539 4.0274 -0.0001 7 6 3.4563 5.4482 -0.0001 8 6 4.9633 5.4481 0.0003 9 8 5.5696 4.3976 0.0010 10 7 5.6373 6.6153 0.0009 11 6 5.0311 7.9546 0.0006 12 6 6.1846 8.9795 0.0279 13 1 5.9376 9.8210 0.6753 14 7 6.4973 9.4440 -1.3259 15 6 5.8411 10.5273 -1.8467 16 1 5.0900 11.0365 -1.2611 17 6 6.1378 10.9677 -3.1292 18 7 7.0494 10.3439 -3.8449 19 14 5.2422 12.4450 -3.8399 20 1 4.2723 12.9631 -2.8419 21 1 6.2254 13.5073 -4.1718 22 1 4.5174 12.0394 -5.0709 23 6 7.3664 8.1635 0.6149 24 6 8.7091 8.7294 0.1480 25 6 7.2950 8.1164 2.1425 26 6 7.1043 6.7602 0.0008 27 6 2.7189 3.3773 -1.1972 28 6 2.2623 2.0725 -1.1972 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0831 1.5632 2.1324 35 1 2.9026 3.8852 2.1324 36 1 3.0927 5.9621 0.8897 37 1 3.0933 5.9619 -0.8903 38 1 4.4045 8.0782 0.8840 39 1 4.4348 8.0915 -0.9015 40 1 7.1691 8.9843 -1.8533 41 1 7.2564 10.6515 -4.7412 42 1 8.8013 9.7643 0.4772 43 1 9.5201 8.1385 0.5737 44 1 8.7621 8.6881 -0.9399 45 1 6.3601 7.6468 2.4483 46 1 8.1353 7.5387 2.5278 47 1 7.3392 9.1304 2.5397 48 1 7.5621 5.9858 0.6163 49 1 7.4900 6.7140 -1.0176 50 1 2.8951 3.8878 -2.1326 51 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996364935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:33 Heat of formation + Delta-G solvation = -29.060385 kcal Electronic energy + Delta-G solvation = -28364.292076 eV Core-core repulsion = 24648.293246 eV Total energy + Delta-G solvation = -3715.998830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44953 -40.38067 -39.11516 -35.72260 -35.51184 -34.58297 -32.59758 -32.17546 -31.81659 -29.42401 -28.79328 -28.00573 -26.79497 -25.63805 -24.05524 -23.64775 -23.03566 -21.56192 -20.36812 -19.93595 -19.09236 -17.96634 -17.35561 -17.07770 -16.77320 -16.27223 -16.21861 -15.88746 -15.71983 -15.43273 -14.96783 -14.65246 -14.56852 -14.50005 -14.29253 -14.11283 -13.85027 -13.68464 -13.41778 -13.25716 -13.05799 -12.98005 -12.93253 -12.82749 -12.76315 -12.65162 -12.52839 -12.13284 -12.06831 -12.01712 -11.83576 -11.69398 -11.65221 -11.44789 -11.28623 -11.00789 -10.86833 -9.80248 -9.60226 -9.42231 -8.99640 -7.91381 -5.19495 0.38821 0.52315 1.49651 1.50751 1.59721 1.62396 2.07370 2.58090 2.85658 3.40485 3.42156 3.69235 3.81667 3.86262 3.89731 3.93474 4.00260 4.07654 4.13752 4.18123 4.33640 4.44236 4.47839 4.50475 4.56598 4.59191 4.62718 4.67633 4.74143 4.76015 4.80965 4.89692 4.92719 5.03299 5.05314 5.09018 5.09919 5.11498 5.16508 5.22633 5.29754 5.35712 5.39356 5.41050 5.51479 5.55576 5.61498 5.68667 5.73031 6.13190 6.29854 6.59432 7.16108 7.37388 8.11856 8.34534 9.32138 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002692 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.993224 B =10400.289352 C =11673.380610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.090 4.090 8 C 0.524 3.476 9 O -0.584 6.584 10 N -0.606 5.606 11 C 0.081 3.919 12 C 0.168 3.832 13 H 0.082 0.918 14 N -0.724 5.724 15 C -0.231 4.231 16 H 0.084 0.916 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.299 1.299 22 H -0.301 1.301 23 C -0.076 4.076 24 C -0.119 4.119 25 C -0.122 4.122 26 C 0.120 3.880 27 C -0.123 4.123 28 C -0.128 4.128 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.374 0.626 41 H 0.248 0.752 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.039 0.961 50 H 0.116 0.884 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 -14.571 13.985 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.142 4.142 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.130 4.130 8 C 0.314 3.686 9 O -0.465 6.465 10 N -0.339 5.339 11 C -0.045 4.045 12 C 0.058 3.942 13 H 0.100 0.900 14 N -0.363 5.363 15 C -0.362 4.362 16 H 0.102 0.898 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.797 3.203 20 H -0.185 1.185 21 H -0.227 1.227 22 H -0.229 1.229 23 C -0.078 4.078 24 C -0.177 4.177 25 C -0.179 4.179 26 C -0.003 4.003 27 C -0.141 4.141 28 C -0.146 4.146 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.207 0.793 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.134 0.866 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.243 -15.009 13.973 22.923 hybrid contribution 0.217 0.846 -1.526 1.759 sum -10.026 -14.163 12.447 21.355 Atomic orbital electron populations 1.21724 0.93901 1.02448 1.01942 1.20582 0.96767 0.91200 1.03497 1.20202 0.98664 0.97309 0.92907 1.21247 0.99944 0.94569 0.98459 1.21195 0.98904 0.95508 0.97481 1.19445 0.99644 0.95129 0.94089 1.20643 0.89937 0.95749 1.06645 1.20721 0.90663 0.81743 0.75445 1.90666 1.71365 1.31913 1.52518 1.48501 1.07439 1.06241 1.71697 1.23098 0.98220 0.81473 1.01672 1.21503 0.91917 0.94068 0.86709 0.90012 1.42627 1.46528 1.34123 1.13021 1.19681 1.14831 1.04679 0.97039 0.89791 1.25488 1.00763 1.02444 0.98032 1.69826 1.37146 1.44063 1.11061 0.85165 0.77759 0.79327 0.78056 1.18525 1.22662 1.22878 1.22056 0.95923 0.92799 0.97017 1.21496 0.95089 1.00806 1.00325 1.21632 1.02285 1.02801 0.91206 1.22277 0.80910 0.97692 0.99378 1.21165 0.99551 0.95763 0.97609 1.21193 1.00327 0.94452 0.98630 0.93089 0.91012 0.92643 0.90674 0.90137 0.84110 0.84977 0.85570 0.87566 0.88986 0.92531 0.79307 0.94349 0.92312 0.91345 0.94523 0.92338 0.91506 0.91035 0.90931 0.94262 0.86638 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.07 16 2 C -0.08 -1.23 6.06 29.85 0.18 -1.05 16 3 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 4 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 5 C -0.11 -2.65 9.70 22.27 0.22 -2.43 16 6 C -0.08 -2.18 4.37 -19.86 -0.09 -2.27 16 7 C -0.09 -2.29 5.02 29.10 0.15 -2.15 16 8 C 0.52 17.33 7.84 87.66 0.69 18.02 16 9 O -0.58 -23.55 16.29 -3.05 -0.05 -23.60 16 10 N -0.61 -19.63 3.32 -810.80 -2.69 -22.32 16 11 C 0.08 2.48 5.91 86.73 0.51 2.99 16 12 C 0.17 5.78 2.86 46.18 0.13 5.91 16 13 H 0.08 2.67 8.01 -2.38 -0.02 2.65 16 14 N -0.72 -33.14 4.56 -317.33 -1.45 -34.59 16 15 C -0.23 -11.73 9.97 84.04 0.84 -10.89 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.11 5.50 84.86 0.47 -3.65 16 18 N -0.97 -57.85 13.06 21.65 0.28 -57.57 16 19 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 C -0.08 -2.26 0.84 -50.62 -0.04 -2.30 16 24 C -0.12 -3.72 8.23 71.98 0.59 -3.13 16 25 C -0.12 -2.74 8.58 71.98 0.62 -2.13 16 26 C 0.12 4.01 5.83 87.03 0.51 4.52 16 27 C -0.12 -3.28 9.70 22.27 0.22 -3.07 16 28 C -0.13 -2.99 9.70 22.27 0.22 -2.77 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.13 2.45 8.08 -2.39 -0.02 2.43 16 37 H 0.11 2.60 8.08 -2.39 -0.02 2.58 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 40 H 0.37 19.12 6.21 -92.71 -0.58 18.54 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.38 6.44 -2.38 -0.02 1.37 16 45 H 0.06 1.27 7.91 -2.39 -0.02 1.25 16 46 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 2.35 7.95 -2.39 -0.02 2.33 16 49 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 50 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 51 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -67.74 411.38 4.47 -63.27 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: 0.31 Total: 38.16 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 6.03 Total: -9.85 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -3.85 Total: -114.48 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.74 4.47 -63.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996364935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.211 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds