Wall clock time and date at job start Tue Mar 31 2020 16:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47359 * 2 1 4 4 C 1.38241 * 119.99785 * 90.00306 * 3 2 1 5 5 C 1.38232 * 119.99850 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00118 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.47058 * 89.99646 * 7 6 5 9 9 O 1.21277 * 119.99454 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99859 * 179.97438 * 8 7 6 11 11 C 1.48377 * 127.17363 * 359.79658 * 10 8 7 12 12 C 1.54941 * 103.37625 * 219.23685 * 11 10 8 13 13 H 1.09002 * 110.73789 * 81.06128 * 12 11 10 14 14 N 1.46500 * 110.74150 * 204.38905 * 12 11 10 15 15 C 1.36936 * 119.99987 * 268.41964 * 14 12 11 16 16 H 1.08004 * 119.99840 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00225 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99743 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47242 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47066 * 119.99912 * 19 17 15 22 22 H 1.48500 * 109.47330 * 240.00296 * 19 17 15 23 23 C 1.54616 * 102.83624 * 322.72418 * 12 11 10 24 24 C 1.52999 * 110.32768 * 262.95516 * 23 12 11 25 25 C 1.53001 * 110.32548 * 140.74040 * 23 12 11 26 26 C 1.47485 * 127.02912 * 180.02562 * 10 8 7 27 27 C 1.38236 * 120.00212 * 0.25037 * 6 5 4 28 28 C 1.38230 * 120.00241 * 270.02904 * 3 2 1 29 29 H 1.08997 * 109.47905 * 59.99516 * 1 2 3 30 30 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47338 * 299.99560 * 1 2 3 32 32 H 1.09006 * 109.46954 * 240.00069 * 2 1 3 33 33 H 1.08999 * 109.47446 * 120.00716 * 2 1 3 34 34 H 1.07999 * 119.99555 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99889 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47024 * 330.00196 * 7 6 5 37 37 H 1.08999 * 109.47223 * 209.99711 * 7 6 5 38 38 H 1.09005 * 110.51886 * 100.79140 * 11 10 8 39 39 H 1.09006 * 110.83140 * 337.82857 * 11 10 8 40 40 H 0.96994 * 120.00094 * 88.41638 * 14 12 11 41 41 H 0.97003 * 119.99764 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46892 * 177.07163 * 24 23 12 43 43 H 1.09000 * 109.47199 * 297.07499 * 24 23 12 44 44 H 1.09000 * 109.46597 * 57.07746 * 24 23 12 45 45 H 1.09002 * 109.47188 * 302.92319 * 25 23 12 46 46 H 1.08995 * 109.47348 * 62.92512 * 25 23 12 47 47 H 1.09002 * 109.47358 * 182.92520 * 25 23 12 48 48 H 1.09002 * 109.91598 * 35.15596 * 26 10 8 49 49 H 1.08999 * 109.91369 * 274.06677 * 26 10 8 50 50 H 1.07993 * 120.00251 * 179.72550 * 27 6 5 51 51 H 1.07995 * 120.00404 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7231 3.3758 1.1972 6 6 2.9525 4.0279 0.0002 7 6 3.4538 5.4491 0.0002 8 6 4.9609 5.4501 -0.0004 9 8 5.5679 4.4002 -0.0013 10 7 5.6339 6.6179 -0.0010 11 6 5.0572 7.9850 -0.0054 12 6 5.9962 8.7670 -0.9579 13 1 5.7314 8.5817 -1.9989 14 7 5.9609 10.2009 -0.6595 15 6 5.0729 11.0142 -1.3113 16 1 4.3987 10.5987 -2.0457 17 6 5.0390 12.3728 -1.0281 18 7 5.8602 12.8790 -0.1328 19 14 3.8280 13.4824 -1.9178 20 1 3.0221 12.6744 -2.8679 21 1 2.9272 14.1260 -0.9281 22 1 4.5717 14.5288 -2.6643 23 6 7.3867 8.1742 -0.6327 24 6 8.1272 9.0704 0.3619 25 6 8.2068 8.0090 -1.9138 26 6 7.0975 6.7994 -0.0022 27 6 2.7166 3.3783 -1.1970 28 6 2.2622 2.0727 -1.1971 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9028 3.8850 2.1325 36 1 3.0905 5.9624 0.8905 37 1 3.0897 5.9628 -0.8895 38 1 5.0822 8.4134 0.9967 39 1 4.0383 7.9747 -0.3925 40 1 6.5666 10.5741 -0.0001 41 1 5.8368 13.8284 0.0648 42 1 9.0824 8.6138 0.6210 43 1 8.3018 10.0471 -0.0893 44 1 7.5249 9.1886 1.2626 45 1 7.6606 7.3795 -2.6162 46 1 8.3813 8.9870 -2.3621 47 1 9.1629 7.5427 -1.6756 48 1 7.5687 6.0136 -0.5926 49 1 7.4757 6.7731 1.0197 50 1 2.8916 3.8892 -2.1322 51 1 2.0821 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996364936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:39 Heat of formation + Delta-G solvation = -10.183706 kcal Electronic energy + Delta-G solvation = -28181.203828 eV Core-core repulsion = 24466.023552 eV Total energy + Delta-G solvation = -3715.180276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.20613 -39.38306 -37.88393 -34.73593 -34.13819 -33.20546 -31.35546 -30.96166 -30.83232 -27.89212 -27.45970 -27.01403 -25.59861 -23.93205 -23.28269 -22.78806 -21.66704 -20.72592 -19.04252 -18.47135 -17.38785 -16.75429 -16.25651 -16.04191 -15.45785 -15.33688 -14.94534 -14.56773 -14.06361 -13.97111 -13.88785 -13.80548 -13.70952 -13.40759 -13.18833 -13.03034 -12.80629 -12.64845 -12.18184 -12.11489 -11.94747 -11.82778 -11.72189 -11.54251 -11.36241 -11.21486 -11.02111 -10.98241 -10.95213 -10.91712 -10.56033 -10.47903 -10.19742 -9.92006 -9.76043 -9.63115 -9.06882 -8.92611 -8.54799 -8.37622 -7.09127 -5.88617 -3.18475 1.26902 1.40065 2.84972 3.19718 3.36487 3.43012 3.44729 3.76400 4.49046 4.54655 4.65591 4.72532 4.77704 4.90781 4.95694 5.07701 5.11123 5.12207 5.17277 5.26568 5.30991 5.41139 5.46428 5.52517 5.54563 5.62679 5.63629 5.68131 5.74118 5.79725 5.87533 5.90424 5.98638 6.02176 6.04047 6.05408 6.14633 6.20327 6.29514 6.31306 6.35967 6.41974 6.53744 6.54772 6.58566 6.63436 6.74977 6.90895 6.97487 7.60961 7.83663 8.29675 8.39594 9.42137 9.96628 10.31732 11.33574 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.002528 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.230089 B =11073.704266 C =12271.743700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.063 4.063 7 C -0.100 4.100 8 C 0.532 3.468 9 O -0.547 6.547 10 N -0.618 5.618 11 C 0.073 3.927 12 C 0.179 3.821 13 H 0.065 0.935 14 N -0.713 5.713 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.088 4.088 24 C -0.135 4.135 25 C -0.130 4.130 26 C 0.119 3.881 27 C -0.102 4.102 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.391 0.609 41 H 0.256 0.744 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 -20.128 1.014 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.063 4.063 7 C -0.139 4.139 8 C 0.320 3.680 9 O -0.425 6.425 10 N -0.352 5.352 11 C -0.053 4.053 12 C 0.066 3.934 13 H 0.083 0.917 14 N -0.355 5.355 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.090 4.090 24 C -0.192 4.192 25 C -0.188 4.188 26 C -0.004 4.004 27 C -0.120 4.120 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.228 0.772 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.184 -20.649 0.910 21.309 hybrid contribution -0.472 0.998 -0.149 1.114 sum -5.656 -19.651 0.762 20.463 Atomic orbital electron populations 1.21747 0.94827 1.01520 1.02253 1.20524 0.96061 0.92856 1.02705 1.19845 0.99564 0.96085 0.93281 1.20925 1.00484 0.94767 0.97392 1.20955 0.98818 0.94851 0.97410 1.19307 0.98702 0.94749 0.93559 1.20651 0.92640 0.95207 1.05439 1.20076 0.89263 0.82214 0.76400 1.90690 1.70250 1.30697 1.50851 1.48887 1.07852 1.06266 1.72181 1.23778 0.99372 0.80076 1.02074 1.21262 0.90371 0.85493 0.96279 0.91665 1.42598 1.43947 1.00448 1.48512 1.19302 1.12214 0.89342 1.16890 0.91040 1.24748 0.99515 0.96928 0.99354 1.69660 1.39801 1.12584 1.35679 0.86131 0.80436 0.80831 0.78831 1.20500 1.21819 1.21823 1.21719 0.97437 0.93760 0.96075 1.21747 0.98743 1.00223 0.98527 1.21787 0.98721 1.02065 0.96218 1.22115 0.80794 0.97100 1.00430 1.20974 0.98744 0.94830 0.97445 1.20931 1.00467 0.94733 0.97404 0.92554 0.92556 0.92563 0.91171 0.91184 0.86337 0.86295 0.88041 0.87916 0.90882 0.90799 0.77153 0.93401 0.93395 0.90637 0.92414 0.93044 0.91732 0.93172 0.91123 0.92054 0.86221 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.15 0.37 -0.65 16 2 C -0.08 -0.67 6.06 -27.89 -0.17 -0.84 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.10 -1.25 9.70 -39.59 -0.38 -1.63 16 6 C -0.06 -0.81 4.37 -104.62 -0.46 -1.27 16 7 C -0.10 -1.26 4.78 -29.03 -0.14 -1.40 16 8 C 0.53 8.43 7.89 -10.98 -0.09 8.34 16 9 O -0.55 -10.38 16.37 5.56 0.09 -10.29 16 10 N -0.62 -9.66 3.30 -169.55 -0.56 -10.22 16 11 C 0.07 1.18 6.63 -1.98 -0.01 1.17 16 12 C 0.18 3.25 3.15 -66.06 -0.21 3.04 16 13 H 0.07 1.24 7.81 -51.93 -0.41 0.83 16 14 N -0.71 -16.11 4.97 -51.61 -0.26 -16.37 16 15 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 16 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 19 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.09 -1.38 0.95 -153.15 -0.15 -1.53 16 24 C -0.13 -2.12 7.02 37.16 0.26 -1.86 16 25 C -0.13 -1.89 8.23 37.16 0.31 -1.58 16 26 C 0.12 1.81 6.28 -2.99 -0.02 1.79 16 27 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 28 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 37 H 0.10 1.16 7.86 -51.93 -0.41 0.76 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.13 7.27 -51.93 -0.38 0.76 16 40 H 0.39 9.32 5.13 -40.82 -0.21 9.11 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.35 7.00 -51.93 -0.36 0.99 16 44 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 45 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 1.09 7.59 -51.93 -0.39 0.70 16 49 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 50 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 51 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -30.24 409.28 -10.33 -40.57 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.85 Total: 9.26 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.62 Total: -9.67 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.09 Total: -52.30 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.24 -10.33 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996364936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.389 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds