Wall clock time and date at job start Tue Mar 31 2020 16:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47359 * 2 1 4 4 C 1.38241 * 119.99785 * 90.00306 * 3 2 1 5 5 C 1.38232 * 119.99850 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00118 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.47058 * 89.99646 * 7 6 5 9 9 O 1.21277 * 119.99454 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99859 * 179.97438 * 8 7 6 11 11 C 1.48377 * 127.17363 * 359.79658 * 10 8 7 12 12 C 1.54941 * 103.37625 * 219.23685 * 11 10 8 13 13 H 1.09002 * 110.73789 * 81.06128 * 12 11 10 14 14 N 1.46500 * 110.74150 * 204.38905 * 12 11 10 15 15 C 1.36936 * 119.99987 * 268.41964 * 14 12 11 16 16 H 1.08004 * 119.99840 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00225 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99743 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00153 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47242 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47066 * 119.99912 * 19 17 15 22 22 H 1.48500 * 109.47330 * 240.00296 * 19 17 15 23 23 C 1.54616 * 102.83624 * 322.72418 * 12 11 10 24 24 C 1.52999 * 110.32768 * 262.95516 * 23 12 11 25 25 C 1.53001 * 110.32548 * 140.74040 * 23 12 11 26 26 C 1.47485 * 127.02912 * 180.02562 * 10 8 7 27 27 C 1.38236 * 120.00212 * 0.25037 * 6 5 4 28 28 C 1.38230 * 120.00241 * 270.02904 * 3 2 1 29 29 H 1.08997 * 109.47905 * 59.99516 * 1 2 3 30 30 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47338 * 299.99560 * 1 2 3 32 32 H 1.09006 * 109.46954 * 240.00069 * 2 1 3 33 33 H 1.08999 * 109.47446 * 120.00716 * 2 1 3 34 34 H 1.07999 * 119.99555 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99889 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47024 * 330.00196 * 7 6 5 37 37 H 1.08999 * 109.47223 * 209.99711 * 7 6 5 38 38 H 1.09005 * 110.51886 * 100.79140 * 11 10 8 39 39 H 1.09006 * 110.83140 * 337.82857 * 11 10 8 40 40 H 0.96994 * 120.00094 * 88.41638 * 14 12 11 41 41 H 0.97003 * 119.99764 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46892 * 177.07163 * 24 23 12 43 43 H 1.09000 * 109.47199 * 297.07499 * 24 23 12 44 44 H 1.09000 * 109.46597 * 57.07746 * 24 23 12 45 45 H 1.09002 * 109.47188 * 302.92319 * 25 23 12 46 46 H 1.08995 * 109.47348 * 62.92512 * 25 23 12 47 47 H 1.09002 * 109.47358 * 182.92520 * 25 23 12 48 48 H 1.09002 * 109.91598 * 35.15596 * 26 10 8 49 49 H 1.08999 * 109.91369 * 274.06677 * 26 10 8 50 50 H 1.07993 * 120.00251 * 179.72550 * 27 6 5 51 51 H 1.07995 * 120.00404 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7231 3.3758 1.1972 6 6 2.9525 4.0279 0.0002 7 6 3.4538 5.4491 0.0002 8 6 4.9609 5.4501 -0.0004 9 8 5.5679 4.4002 -0.0013 10 7 5.6339 6.6179 -0.0010 11 6 5.0572 7.9850 -0.0054 12 6 5.9962 8.7670 -0.9579 13 1 5.7314 8.5817 -1.9989 14 7 5.9609 10.2009 -0.6595 15 6 5.0729 11.0142 -1.3113 16 1 4.3987 10.5987 -2.0457 17 6 5.0390 12.3728 -1.0281 18 7 5.8602 12.8790 -0.1328 19 14 3.8280 13.4824 -1.9178 20 1 3.0221 12.6744 -2.8679 21 1 2.9272 14.1260 -0.9281 22 1 4.5717 14.5288 -2.6643 23 6 7.3867 8.1742 -0.6327 24 6 8.1272 9.0704 0.3619 25 6 8.2068 8.0090 -1.9138 26 6 7.0975 6.7994 -0.0022 27 6 2.7166 3.3783 -1.1970 28 6 2.2622 2.0727 -1.1971 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9028 3.8850 2.1325 36 1 3.0905 5.9624 0.8905 37 1 3.0897 5.9628 -0.8895 38 1 5.0822 8.4134 0.9967 39 1 4.0383 7.9747 -0.3925 40 1 6.5666 10.5741 -0.0001 41 1 5.8368 13.8284 0.0648 42 1 9.0824 8.6138 0.6210 43 1 8.3018 10.0471 -0.0893 44 1 7.5249 9.1886 1.2626 45 1 7.6606 7.3795 -2.6162 46 1 8.3813 8.9870 -2.3621 47 1 9.1629 7.5427 -1.6756 48 1 7.5687 6.0136 -0.5926 49 1 7.4757 6.7731 1.0197 50 1 2.8916 3.8892 -2.1322 51 1 2.0821 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996364936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:37 Heat of formation + Delta-G solvation = -24.594110 kcal Electronic energy + Delta-G solvation = -28181.828710 eV Core-core repulsion = 24466.023552 eV Total energy + Delta-G solvation = -3715.805158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.41981 -40.38142 -39.16581 -35.85893 -35.51116 -34.62075 -32.66574 -32.17248 -31.80884 -29.16230 -28.71613 -28.30124 -26.68952 -25.74087 -24.07257 -23.64004 -23.11295 -21.57034 -20.28455 -19.86696 -19.19293 -18.03348 -17.24556 -17.14040 -16.63939 -16.44976 -16.14830 -15.96610 -15.49000 -15.37987 -15.09507 -14.70340 -14.58731 -14.48196 -14.29520 -14.20124 -14.11122 -13.74499 -13.37746 -13.23674 -13.04326 -12.96752 -12.90367 -12.83498 -12.69164 -12.54091 -12.50708 -12.06446 -12.05039 -11.99633 -11.90275 -11.70234 -11.64568 -11.49790 -11.32338 -10.99387 -10.89300 -9.79516 -9.73951 -9.41617 -8.96421 -7.91722 -5.19748 0.39328 0.53230 1.50524 1.52233 1.60458 1.60862 1.98098 2.59027 2.85538 3.40195 3.46517 3.69334 3.77162 3.87226 3.90254 3.92819 3.98686 4.14428 4.14808 4.18483 4.35548 4.43710 4.45404 4.49873 4.50775 4.57412 4.59827 4.67472 4.74557 4.75661 4.79878 4.84002 4.86566 4.99002 5.04516 5.05898 5.09292 5.11492 5.18330 5.20350 5.23472 5.35098 5.39799 5.41324 5.51270 5.52372 5.59682 5.69012 5.73924 6.13826 6.30405 6.55916 7.13568 7.38924 8.11867 8.36757 9.31435 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.002528 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.230089 B =11073.704266 C =12271.743700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.094 4.094 8 C 0.532 3.468 9 O -0.579 6.579 10 N -0.616 5.616 11 C 0.086 3.914 12 C 0.171 3.829 13 H 0.059 0.941 14 N -0.722 5.722 15 C -0.237 4.237 16 H 0.078 0.922 17 C -0.070 4.070 18 N -0.966 5.966 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.296 1.296 22 H -0.299 1.299 23 C -0.081 4.081 24 C -0.128 4.128 25 C -0.126 4.126 26 C 0.120 3.880 27 C -0.118 4.118 28 C -0.126 4.126 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.384 0.616 41 H 0.250 0.750 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.125 0.875 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -22.044 0.667 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.133 4.133 8 C 0.322 3.678 9 O -0.459 6.459 10 N -0.349 5.349 11 C -0.040 4.040 12 C 0.060 3.940 13 H 0.078 0.922 14 N -0.364 5.364 15 C -0.369 4.369 16 H 0.096 0.904 17 C -0.263 4.263 18 N -0.616 5.616 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.224 1.224 22 H -0.226 1.226 23 C -0.082 4.082 24 C -0.185 4.185 25 C -0.184 4.184 26 C -0.002 4.002 27 C -0.136 4.136 28 C -0.144 4.144 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.220 0.780 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.143 0.857 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.101 -22.610 0.544 23.425 hybrid contribution -0.165 1.457 -0.051 1.468 sum -6.266 -21.153 0.492 22.067 Atomic orbital electron populations 1.21726 0.93996 1.02426 1.01920 1.20580 0.96684 0.91258 1.03517 1.20206 0.98642 0.97298 0.92953 1.21221 1.00107 0.94556 0.98520 1.21178 0.99204 0.95587 0.97575 1.19430 0.99764 0.95014 0.94126 1.20664 0.90125 0.95794 1.06714 1.20616 0.90464 0.81458 0.75249 1.90672 1.71202 1.31683 1.52337 1.48896 1.07978 1.06016 1.72054 1.23464 0.99389 0.80039 1.01072 1.21417 0.92625 0.83615 0.96335 0.92247 1.42701 1.43385 1.02100 1.48178 1.19652 1.11625 0.89674 1.15904 0.90444 1.25444 1.01594 0.98441 1.00776 1.69799 1.41848 1.12299 1.37700 0.85185 0.78497 0.78987 0.77747 1.19014 1.22384 1.22610 1.21653 0.96128 0.93734 0.96732 1.21657 0.99923 0.99102 0.97835 1.21750 0.99663 1.01504 0.95453 1.22109 0.80816 0.96511 1.00812 1.21186 0.99212 0.95581 0.97590 1.21221 1.00147 0.94523 0.98535 0.92917 0.91045 0.92881 0.90399 0.90367 0.84517 0.85660 0.86582 0.86626 0.91556 0.89597 0.78028 0.94125 0.90781 0.93159 0.93310 0.92727 0.93185 0.90981 0.90940 0.91353 0.85716 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.08 -1.15 6.06 29.85 0.18 -0.97 16 3 C -0.09 -1.78 5.13 -19.87 -0.10 -1.89 16 4 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 5 C -0.12 -2.75 9.70 22.27 0.22 -2.54 16 6 C -0.08 -2.06 4.37 -19.87 -0.09 -2.15 16 7 C -0.09 -2.24 4.78 29.11 0.14 -2.10 16 8 C 0.53 16.22 7.89 87.66 0.69 16.91 16 9 O -0.58 -21.49 16.37 -3.02 -0.05 -21.54 16 10 N -0.62 -18.43 3.30 -808.74 -2.67 -21.10 16 11 C 0.09 2.69 6.63 86.68 0.57 3.27 16 12 C 0.17 6.11 3.15 46.21 0.15 6.25 16 13 H 0.06 2.20 7.81 -2.39 -0.02 2.18 16 14 N -0.72 -32.68 4.97 -317.20 -1.58 -34.26 16 15 C -0.24 -12.04 9.96 84.03 0.84 -11.20 16 16 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 17 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 18 N -0.97 -55.93 13.06 21.65 0.28 -55.64 16 19 Si 0.97 43.94 29.55 68.60 2.03 45.96 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 C -0.08 -2.45 0.95 -51.30 -0.05 -2.50 16 24 C -0.13 -3.94 7.02 71.98 0.51 -3.43 16 25 C -0.13 -3.48 8.23 71.98 0.59 -2.89 16 26 C 0.12 3.49 6.28 86.52 0.54 4.03 16 27 C -0.12 -2.78 9.70 22.27 0.22 -2.57 16 28 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 33 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 34 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.12 2.40 8.09 -2.39 -0.02 2.38 16 37 H 0.12 2.43 7.86 -2.39 -0.02 2.41 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.09 2.49 7.27 -2.38 -0.02 2.47 16 40 H 0.38 18.57 5.13 -92.71 -0.48 18.10 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 44 H 0.05 1.57 7.95 -2.39 -0.02 1.55 16 45 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.07 2.11 7.59 -2.39 -0.02 2.09 16 49 H 0.07 1.91 7.68 -2.39 -0.02 1.89 16 50 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 51 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -64.44 409.28 4.45 -59.99 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: 0.42 Total: 37.46 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 6.02 Total: -10.87 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -3.96 Total: -111.01 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.44 4.45 -59.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996364936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.398 kcal (2) G-P(sol) polarization free energy of solvation -64.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds