Wall clock time and date at job start Tue Mar 31 2020 16:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47027 * 2 1 4 4 C 1.50706 * 109.46737 * 119.99513 * 2 1 3 5 5 O 1.21278 * 119.99751 * 239.19313 * 4 2 1 6 6 N 1.34776 * 120.00118 * 59.19443 * 4 2 1 7 7 C 1.48119 * 127.02959 * 355.23387 * 6 4 2 8 8 C 1.55113 * 103.31177 * 140.79926 * 7 6 4 9 9 H 1.08991 * 110.72917 * 278.97683 * 8 7 6 10 10 N 1.46501 * 110.83161 * 155.59587 * 8 7 6 11 11 C 1.36936 * 120.00037 * 91.62577 * 10 8 7 12 12 H 1.08008 * 119.99733 * 0.02562 * 11 10 8 13 13 C 1.38812 * 120.00426 * 180.02562 * 11 10 8 14 14 N 1.31616 * 119.99993 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00150 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47205 * 89.99546 * 15 13 11 17 17 H 1.48503 * 109.46827 * 209.99230 * 15 13 11 18 18 H 1.48502 * 109.47092 * 329.99217 * 15 13 11 19 19 C 1.54620 * 102.76059 * 37.26563 * 8 7 6 20 20 C 1.52997 * 110.32654 * 219.32020 * 19 8 7 21 21 C 1.53000 * 110.33149 * 97.20437 * 19 8 7 22 22 C 1.47482 * 127.03370 * 175.27700 * 6 4 2 23 23 C 1.50697 * 109.47285 * 239.99202 * 2 1 3 24 24 C 1.38234 * 120.00341 * 232.80076 * 23 2 1 25 25 C 1.38230 * 120.00277 * 179.77444 * 24 23 2 26 26 C 1.38235 * 119.99895 * 0.47961 * 25 24 23 27 27 C 1.38238 * 120.00022 * 359.79804 * 26 25 24 28 28 C 1.38234 * 119.99799 * 53.07866 * 23 2 1 29 29 H 1.08995 * 109.47593 * 304.63380 * 1 2 3 30 30 H 1.09005 * 109.46663 * 64.63599 * 1 2 3 31 31 H 1.09003 * 109.46869 * 184.62849 * 1 2 3 32 32 H 1.09002 * 109.47336 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47144 * 299.99336 * 3 2 1 34 34 H 1.08997 * 109.47524 * 59.99573 * 3 2 1 35 35 H 1.09005 * 110.66364 * 259.18314 * 7 6 4 36 36 H 1.08992 * 110.66617 * 22.13931 * 7 6 4 37 37 H 0.97000 * 120.00262 * 271.63416 * 10 8 7 38 38 H 0.96995 * 120.00530 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47536 * 298.56172 * 20 19 8 40 40 H 1.09000 * 109.47316 * 178.56236 * 20 19 8 41 41 H 1.09005 * 109.47509 * 58.56517 * 20 19 8 42 42 H 1.08994 * 109.47471 * 181.43548 * 21 19 8 43 43 H 1.08999 * 109.47052 * 301.43947 * 21 19 8 44 44 H 1.09003 * 109.46817 * 61.43467 * 21 19 8 45 45 H 1.08997 * 109.91369 * 86.05319 * 22 6 4 46 46 H 1.08993 * 110.07642 * 324.86162 * 22 6 4 47 47 H 1.08006 * 119.99860 * 0.02562 * 24 23 2 48 48 H 1.08002 * 120.00166 * 180.25337 * 25 24 23 49 49 H 1.08005 * 120.00361 * 179.77253 * 26 25 24 50 50 H 1.07997 * 120.00069 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00165 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7415 -0.1252 2.0214 6 7 1.6933 -1.9958 1.4522 7 6 0.7648 -2.8247 0.6492 8 6 1.4534 -4.2144 0.6286 9 1 2.2387 -4.2446 -0.1266 10 7 0.4725 -5.2786 0.4019 11 6 0.2022 -5.7005 -0.8725 12 1 0.7125 -5.2489 -1.7105 13 6 -0.7277 -6.7085 -1.0875 14 7 -1.3492 -7.2591 -0.0663 15 14 -1.0958 -7.2845 -2.8259 16 1 -0.1780 -8.3955 -3.1841 17 1 -2.5010 -7.7588 -2.9030 18 1 -0.9013 -6.1569 -3.7725 19 6 2.0554 -4.3183 2.0490 20 6 3.4377 -4.9718 1.9939 21 6 1.1260 -5.1194 2.9630 22 6 2.1703 -2.8646 2.5444 23 6 2.0324 -0.7106 -1.2303 24 6 2.9452 -1.7415 -1.1089 25 6 3.4024 -2.3964 -2.2370 26 6 2.9544 -2.0137 -3.4876 27 6 2.0460 -0.9789 -3.6095 28 6 1.5848 -0.3275 -2.4808 29 1 -0.3634 0.5840 0.8455 30 1 -0.3633 0.4402 -0.9287 31 1 -0.3633 -1.0243 0.0829 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 -0.2105 -2.8873 1.1321 36 1 0.6678 -2.4254 -0.3603 37 1 0.0143 -5.6843 1.1545 38 1 -1.9987 -7.9637 -0.2164 39 1 3.3465 -5.9819 1.5945 40 1 3.8596 -5.0149 2.9980 41 1 4.0921 -4.3842 1.3499 42 1 1.5509 -5.1623 3.9658 43 1 0.1499 -4.6359 3.0023 44 1 1.0149 -6.1307 2.5718 45 1 1.5493 -2.7237 3.4290 46 1 3.2092 -2.6336 2.7796 47 1 3.2980 -2.0381 -0.1321 48 1 4.1125 -3.2046 -2.1418 49 1 3.3145 -2.5229 -4.3694 50 1 1.6963 -0.6797 -4.5865 51 1 0.8753 0.4812 -2.5761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996582636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:18 Heat of formation + Delta-G solvation = 9.231772 kcal Electronic energy + Delta-G solvation = -30846.632849 eV Core-core repulsion = 27132.294492 eV Total energy + Delta-G solvation = -3714.338357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93614 -38.91487 -38.00942 -35.11494 -34.14459 -33.09518 -30.89309 -30.73529 -29.69863 -27.60679 -27.40019 -27.02222 -26.28265 -24.00565 -23.50899 -22.43614 -21.81837 -20.72821 -18.71441 -18.44615 -17.46361 -17.19592 -16.28540 -15.68646 -15.33190 -15.06832 -14.55707 -14.32591 -14.02314 -14.00045 -13.86104 -13.64949 -13.36482 -13.24853 -13.08919 -12.77563 -12.61501 -12.36905 -12.19914 -12.03046 -11.91977 -11.88050 -11.66951 -11.53720 -11.24173 -11.07434 -11.02745 -10.96058 -10.91479 -10.66318 -10.53837 -10.41834 -10.20018 -9.88831 -9.68973 -9.50013 -9.02079 -8.76743 -8.56627 -8.34760 -7.05019 -5.85164 -3.14475 1.44714 1.53589 2.79292 3.19753 3.38339 3.44724 3.45523 3.88872 4.46098 4.56192 4.61139 4.89072 5.01987 5.08401 5.10774 5.11377 5.17435 5.18256 5.24508 5.48056 5.55700 5.60086 5.62187 5.63985 5.71322 5.76118 5.79958 5.82849 5.84436 5.89585 6.00112 6.04859 6.07700 6.12043 6.14149 6.16567 6.21867 6.27969 6.30957 6.32958 6.44368 6.55438 6.58239 6.62251 6.66423 6.68183 6.76800 6.93087 7.09818 7.65222 7.82970 8.32793 8.36539 9.45723 10.00202 10.35335 11.37121 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.005497 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.478635 B = 5092.609327 C = 6591.523524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.036 4.036 3 C -0.121 4.121 4 C 0.543 3.457 5 O -0.551 6.551 6 N -0.613 5.613 7 C 0.068 3.932 8 C 0.181 3.819 9 H 0.066 0.934 10 N -0.712 5.712 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.008 4.008 14 N -0.931 5.931 15 Si 0.904 3.096 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.281 1.281 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.135 4.135 22 C 0.117 3.883 23 C -0.072 4.072 24 C -0.108 4.108 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.111 4.111 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.390 0.610 38 H 0.256 0.744 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 12.544 -0.827 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.039 4.039 3 C -0.178 4.178 4 C 0.331 3.669 5 O -0.430 6.430 6 N -0.345 5.345 7 C -0.057 4.057 8 C 0.069 3.931 9 H 0.084 0.916 10 N -0.354 5.354 11 C -0.373 4.373 12 H 0.089 0.911 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.735 3.265 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.091 4.091 20 C -0.188 4.188 21 C -0.193 4.193 22 C -0.006 4.006 23 C -0.073 4.073 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.129 4.129 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.228 0.772 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.176 12.876 -0.596 14.753 hybrid contribution -0.589 -0.617 -0.746 1.133 sum 6.587 12.259 -1.341 13.981 Atomic orbital electron populations 1.22151 0.91812 1.04186 1.02708 1.19694 0.97410 0.96162 0.90647 1.21652 1.01876 0.92344 1.01933 1.19974 0.80009 0.80176 0.86725 1.90658 1.39050 1.65375 1.47867 1.48814 1.45531 1.10338 1.29864 1.23929 0.93059 0.93148 0.95572 1.21288 0.91801 0.87147 0.92887 0.91585 1.42588 1.46307 1.39801 1.06712 1.19245 1.18390 1.14795 0.84901 0.91145 1.24709 0.99421 0.99192 0.97109 1.69643 1.30362 1.29034 1.28838 0.86245 0.77320 0.78651 0.84321 1.21696 1.21787 1.20679 1.21745 0.96583 0.93030 0.97780 1.21792 0.94892 1.01242 1.00886 1.21752 0.98544 1.01465 0.97510 1.22149 0.99805 0.88918 0.89743 1.19433 0.97762 0.96633 0.93436 1.21266 0.96761 0.95376 0.99228 1.21110 0.99968 0.99334 0.92420 1.21143 0.97767 0.97232 0.97493 1.21060 0.97783 0.96632 0.98256 1.20852 1.00131 1.00221 0.91667 0.91942 0.91262 0.90466 0.91900 0.91959 0.91744 0.91189 0.89823 0.77210 0.93419 0.91693 0.93148 0.93147 0.93411 0.92483 0.90558 0.91967 0.91125 0.85801 0.86076 0.86256 0.86214 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.06 37.16 0.30 -1.56 16 2 C -0.04 -0.49 0.59 -156.81 -0.09 -0.58 16 3 C -0.12 -1.46 7.64 37.15 0.28 -1.17 16 4 C 0.54 8.75 5.23 -10.98 -0.06 8.69 16 5 O -0.55 -10.32 16.36 5.56 0.09 -10.23 16 6 N -0.61 -9.65 2.19 -169.66 -0.37 -10.02 16 7 C 0.07 1.16 3.93 -2.03 -0.01 1.15 16 8 C 0.18 3.32 3.10 -65.96 -0.20 3.11 16 9 H 0.07 1.27 7.29 -51.93 -0.38 0.89 16 10 N -0.71 -16.18 4.97 -51.52 -0.26 -16.43 16 11 C -0.24 -6.24 9.96 -15.06 -0.15 -6.39 16 12 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 13 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 14 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 15 Si 0.90 21.50 29.55 -169.99 -5.02 16.47 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 C -0.09 -1.40 0.95 -153.13 -0.15 -1.54 16 20 C -0.13 -1.86 8.22 37.16 0.31 -1.56 16 21 C -0.14 -2.13 7.04 37.16 0.26 -1.87 16 22 C 0.12 1.77 6.27 -2.98 -0.02 1.75 16 23 C -0.07 -0.99 3.33 -104.63 -0.35 -1.34 16 24 C -0.11 -1.59 6.88 -39.59 -0.27 -1.86 16 25 C -0.11 -1.52 10.05 -39.59 -0.40 -1.92 16 26 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 27 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 28 C -0.11 -1.36 8.75 -39.58 -0.35 -1.71 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.72 6.86 -51.93 -0.36 0.37 16 31 H 0.08 1.06 4.84 -51.93 -0.25 0.81 16 32 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.06 0.61 7.84 -51.93 -0.41 0.21 16 34 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 36 H 0.08 1.45 4.51 -51.93 -0.23 1.21 16 37 H 0.39 9.35 5.13 -40.82 -0.21 9.14 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 44 H 0.08 1.38 6.90 -51.93 -0.36 1.02 16 45 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 46 H 0.07 1.06 7.64 -51.93 -0.40 0.66 16 47 H 0.12 1.94 5.79 -52.48 -0.30 1.64 16 48 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 49 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 50 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 51 H 0.12 1.23 7.07 -52.49 -0.37 0.86 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -29.41 387.86 -9.04 -38.46 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -8.27 Total: 12.62 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.78 Total: -10.86 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.10 Total: -52.30 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.41 -9.04 -38.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996582636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.687 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds