Wall clock time and date at job start Tue Mar 31 2020 16:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47027 * 2 1 4 4 C 1.50706 * 109.46737 * 119.99513 * 2 1 3 5 5 O 1.21278 * 119.99751 * 239.19313 * 4 2 1 6 6 N 1.34776 * 120.00118 * 59.19443 * 4 2 1 7 7 C 1.48119 * 127.02959 * 355.23387 * 6 4 2 8 8 C 1.55113 * 103.31177 * 140.79926 * 7 6 4 9 9 H 1.08991 * 110.72917 * 278.97683 * 8 7 6 10 10 N 1.46501 * 110.83161 * 155.59587 * 8 7 6 11 11 C 1.36936 * 120.00037 * 91.62577 * 10 8 7 12 12 H 1.08008 * 119.99733 * 0.02562 * 11 10 8 13 13 C 1.38812 * 120.00426 * 180.02562 * 11 10 8 14 14 N 1.31616 * 119.99993 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00150 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47205 * 89.99546 * 15 13 11 17 17 H 1.48503 * 109.46827 * 209.99230 * 15 13 11 18 18 H 1.48502 * 109.47092 * 329.99217 * 15 13 11 19 19 C 1.54620 * 102.76059 * 37.26563 * 8 7 6 20 20 C 1.52997 * 110.32654 * 219.32020 * 19 8 7 21 21 C 1.53000 * 110.33149 * 97.20437 * 19 8 7 22 22 C 1.47482 * 127.03370 * 175.27700 * 6 4 2 23 23 C 1.50697 * 109.47285 * 239.99202 * 2 1 3 24 24 C 1.38234 * 120.00341 * 232.80076 * 23 2 1 25 25 C 1.38230 * 120.00277 * 179.77444 * 24 23 2 26 26 C 1.38235 * 119.99895 * 0.47961 * 25 24 23 27 27 C 1.38238 * 120.00022 * 359.79804 * 26 25 24 28 28 C 1.38234 * 119.99799 * 53.07866 * 23 2 1 29 29 H 1.08995 * 109.47593 * 304.63380 * 1 2 3 30 30 H 1.09005 * 109.46663 * 64.63599 * 1 2 3 31 31 H 1.09003 * 109.46869 * 184.62849 * 1 2 3 32 32 H 1.09002 * 109.47336 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47144 * 299.99336 * 3 2 1 34 34 H 1.08997 * 109.47524 * 59.99573 * 3 2 1 35 35 H 1.09005 * 110.66364 * 259.18314 * 7 6 4 36 36 H 1.08992 * 110.66617 * 22.13931 * 7 6 4 37 37 H 0.97000 * 120.00262 * 271.63416 * 10 8 7 38 38 H 0.96995 * 120.00530 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47536 * 298.56172 * 20 19 8 40 40 H 1.09000 * 109.47316 * 178.56236 * 20 19 8 41 41 H 1.09005 * 109.47509 * 58.56517 * 20 19 8 42 42 H 1.08994 * 109.47471 * 181.43548 * 21 19 8 43 43 H 1.08999 * 109.47052 * 301.43947 * 21 19 8 44 44 H 1.09003 * 109.46817 * 61.43467 * 21 19 8 45 45 H 1.08997 * 109.91369 * 86.05319 * 22 6 4 46 46 H 1.08993 * 110.07642 * 324.86162 * 22 6 4 47 47 H 1.08006 * 119.99860 * 0.02562 * 24 23 2 48 48 H 1.08002 * 120.00166 * 180.25337 * 25 24 23 49 49 H 1.08005 * 120.00361 * 179.77253 * 26 25 24 50 50 H 1.07997 * 120.00069 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00165 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7415 -0.1252 2.0214 6 7 1.6933 -1.9958 1.4522 7 6 0.7648 -2.8247 0.6492 8 6 1.4534 -4.2144 0.6286 9 1 2.2387 -4.2446 -0.1266 10 7 0.4725 -5.2786 0.4019 11 6 0.2022 -5.7005 -0.8725 12 1 0.7125 -5.2489 -1.7105 13 6 -0.7277 -6.7085 -1.0875 14 7 -1.3492 -7.2591 -0.0663 15 14 -1.0958 -7.2845 -2.8259 16 1 -0.1780 -8.3955 -3.1841 17 1 -2.5010 -7.7588 -2.9030 18 1 -0.9013 -6.1569 -3.7725 19 6 2.0554 -4.3183 2.0490 20 6 3.4377 -4.9718 1.9939 21 6 1.1260 -5.1194 2.9630 22 6 2.1703 -2.8646 2.5444 23 6 2.0324 -0.7106 -1.2303 24 6 2.9452 -1.7415 -1.1089 25 6 3.4024 -2.3964 -2.2370 26 6 2.9544 -2.0137 -3.4876 27 6 2.0460 -0.9789 -3.6095 28 6 1.5848 -0.3275 -2.4808 29 1 -0.3634 0.5840 0.8455 30 1 -0.3633 0.4402 -0.9287 31 1 -0.3633 -1.0243 0.0829 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 -0.2105 -2.8873 1.1321 36 1 0.6678 -2.4254 -0.3603 37 1 0.0143 -5.6843 1.1545 38 1 -1.9987 -7.9637 -0.2164 39 1 3.3465 -5.9819 1.5945 40 1 3.8596 -5.0149 2.9980 41 1 4.0921 -4.3842 1.3499 42 1 1.5509 -5.1623 3.9658 43 1 0.1499 -4.6359 3.0023 44 1 1.0149 -6.1307 2.5718 45 1 1.5493 -2.7237 3.4290 46 1 3.2092 -2.6336 2.7796 47 1 3.2980 -2.0381 -0.1321 48 1 4.1125 -3.2046 -2.1418 49 1 3.3145 -2.5229 -4.3694 50 1 1.6963 -0.6797 -4.5865 51 1 0.8753 0.4812 -2.5761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996582636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:17 Heat of formation + Delta-G solvation = -5.000881 kcal Electronic energy + Delta-G solvation = -30847.250023 eV Core-core repulsion = 27132.294492 eV Total energy + Delta-G solvation = -3714.955531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15080 -40.10913 -39.28570 -36.22926 -35.86337 -34.52109 -32.64121 -31.80590 -30.68761 -29.17239 -28.45277 -28.31042 -27.49864 -25.76358 -24.67990 -23.50862 -23.15561 -21.92834 -20.06386 -19.73090 -19.19211 -18.46215 -17.52562 -16.99247 -16.69539 -16.25691 -16.02485 -15.67959 -15.51756 -15.19267 -15.17868 -14.85619 -14.51916 -14.42064 -14.40402 -14.15366 -13.95401 -13.41846 -13.34148 -13.29600 -13.09011 -13.00592 -12.89110 -12.81788 -12.76071 -12.69776 -12.54347 -12.16715 -12.07920 -12.05115 -11.96311 -11.84437 -11.64494 -11.49706 -11.31827 -10.92288 -10.74844 -9.77561 -9.73164 -9.57841 -8.94529 -7.90696 -5.18312 0.44549 0.53483 1.49684 1.50564 1.52149 1.58463 1.92982 2.59178 2.89026 3.28380 3.41252 3.57948 3.64441 3.77827 3.89361 3.98815 4.06881 4.11474 4.14730 4.18634 4.30475 4.34216 4.42827 4.48223 4.59880 4.63720 4.64312 4.70211 4.77069 4.79754 4.83019 4.84629 4.86715 4.89954 5.00021 5.02542 5.07711 5.13283 5.16992 5.18404 5.20117 5.27855 5.35072 5.40615 5.50712 5.59182 5.59881 5.64796 5.66637 6.12289 6.31313 6.51666 7.06637 7.39896 8.12472 8.38050 9.32322 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.005497 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.478635 B = 5092.609327 C = 6591.523524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.034 4.034 3 C -0.116 4.116 4 C 0.540 3.460 5 O -0.579 6.579 6 N -0.609 5.609 7 C 0.088 3.912 8 C 0.178 3.822 9 H 0.058 0.942 10 N -0.721 5.721 11 C -0.233 4.233 12 H 0.072 0.928 13 C -0.066 4.066 14 N -0.965 5.965 15 Si 0.961 3.039 16 H -0.291 1.291 17 H -0.299 1.299 18 H -0.270 1.270 19 C -0.082 4.082 20 C -0.126 4.126 21 C -0.128 4.128 22 C 0.118 3.882 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.112 4.112 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.383 0.617 38 H 0.250 0.750 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.137 0.863 50 H 0.148 0.852 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 14.210 -2.048 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 C -0.174 4.174 4 C 0.330 3.670 5 O -0.459 6.459 6 N -0.341 5.341 7 C -0.038 4.038 8 C 0.067 3.933 9 H 0.076 0.924 10 N -0.362 5.362 11 C -0.364 4.364 12 H 0.090 0.910 13 C -0.259 4.259 14 N -0.616 5.616 15 Si 0.791 3.209 16 H -0.218 1.218 17 H -0.226 1.226 18 H -0.195 1.195 19 C -0.084 4.084 20 C -0.184 4.184 21 C -0.185 4.185 22 C -0.005 4.005 23 C -0.081 4.081 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.129 4.129 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.220 0.780 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.124 0.876 48 H 0.141 0.859 49 H 0.155 0.845 50 H 0.165 0.835 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.370 14.577 -1.822 16.435 hybrid contribution -0.551 -1.078 -0.346 1.259 sum 6.819 13.499 -2.169 15.278 Atomic orbital electron populations 1.22145 0.90705 1.03381 1.04338 1.19746 0.98168 0.96562 0.89189 1.21647 1.00981 0.91526 1.03214 1.20528 0.79309 0.79931 0.87217 1.90640 1.40322 1.65872 1.49109 1.48777 1.45188 1.10446 1.29688 1.23526 0.92398 0.92282 0.95580 1.21379 0.90825 0.86628 0.94440 0.92425 1.42684 1.47086 1.40893 1.05556 1.19526 1.17091 1.13744 0.86084 0.90995 1.25371 1.00218 1.00125 1.00139 1.69782 1.31432 1.29910 1.30478 0.85328 0.76412 0.78266 0.80932 1.21803 1.22558 1.19473 1.21679 0.97147 0.93694 0.95883 1.21752 0.94120 1.00136 1.02347 1.21664 0.98340 0.99678 0.98861 1.22167 1.00271 0.88224 0.89831 1.19516 0.97859 0.96584 0.94178 1.21216 0.98003 0.96594 0.98751 1.21267 1.00513 0.99729 0.92933 1.21443 0.97845 0.97615 0.97562 1.21444 0.96960 0.95877 0.99507 1.21160 1.00152 1.00671 0.90948 0.91304 0.88842 0.92259 0.93291 0.89204 0.91904 0.92251 0.89926 0.78042 0.94130 0.93190 0.90806 0.92770 0.90650 0.93443 0.93100 0.91225 0.90636 0.87577 0.85854 0.84471 0.83456 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.06 71.98 0.58 -2.77 16 2 C -0.03 -0.86 0.59 -53.67 -0.03 -0.89 16 3 C -0.12 -2.58 7.64 71.98 0.55 -2.03 16 4 C 0.54 17.11 5.23 87.66 0.46 17.57 16 5 O -0.58 -21.46 16.36 -3.02 -0.05 -21.51 16 6 N -0.61 -18.96 2.19 -809.06 -1.77 -20.73 16 7 C 0.09 2.96 3.93 86.79 0.34 3.30 16 8 C 0.18 6.56 3.10 46.27 0.14 6.71 16 9 H 0.06 2.24 7.29 -2.39 -0.02 2.22 16 10 N -0.72 -33.25 4.97 -316.92 -1.57 -34.82 16 11 C -0.23 -12.04 9.96 84.03 0.84 -11.20 16 12 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 13 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 14 N -0.97 -56.18 13.06 21.65 0.28 -55.90 16 15 Si 0.96 44.32 29.55 68.60 2.03 46.34 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.08 -2.55 0.95 -51.29 -0.05 -2.59 16 20 C -0.13 -3.51 8.22 71.98 0.59 -2.92 16 21 C -0.13 -4.01 7.04 71.98 0.51 -3.50 16 22 C 0.12 3.48 6.27 86.53 0.54 4.02 16 23 C -0.08 -2.10 3.33 -19.87 -0.07 -2.17 16 24 C -0.13 -3.69 6.88 22.27 0.15 -3.54 16 25 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 26 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 27 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 28 C -0.11 -2.42 8.75 22.27 0.19 -2.23 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.64 6.86 -2.38 -0.02 1.62 16 31 H 0.06 1.56 4.84 -2.39 -0.01 1.54 16 32 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 33 H 0.09 1.47 7.84 -2.38 -0.02 1.46 16 34 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 35 H 0.06 2.15 8.03 -2.38 -0.02 2.13 16 36 H 0.08 2.83 4.51 -2.39 -0.01 2.82 16 37 H 0.38 18.83 5.13 -92.71 -0.48 18.36 16 38 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.05 1.56 8.00 -2.39 -0.02 1.54 16 44 H 0.05 1.87 6.90 -2.39 -0.02 1.85 16 45 H 0.07 1.97 7.68 -2.39 -0.02 1.95 16 46 H 0.08 2.18 7.64 -2.39 -0.02 2.17 16 47 H 0.11 3.38 5.79 -2.91 -0.02 3.36 16 48 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 49 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 50 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 51 H 0.15 2.35 7.07 -2.91 -0.02 2.33 16 Total: -1.00 -63.54 387.86 5.25 -58.30 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: 0.44 Total: 41.95 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 5.89 Total: -13.63 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.06 Total: -111.45 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.54 5.25 -58.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996582636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.295 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds