Wall clock time and date at job start Tue Mar 31 2020 16:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 C 1.50696 * 109.46984 * 119.99967 * 2 1 3 5 5 O 1.21288 * 120.00075 * 238.16454 * 4 2 1 6 6 N 1.34775 * 120.00374 * 58.43874 * 4 2 1 7 7 C 1.47029 * 125.64407 * 4.40074 * 6 4 2 8 8 C 1.54320 * 107.27165 * 181.01927 * 7 6 4 9 9 H 1.09003 * 110.72192 * 140.55658 * 8 7 6 10 10 N 1.46499 * 110.72426 * 263.65113 * 8 7 6 11 11 C 1.36932 * 120.00042 * 273.54921 * 10 8 7 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 8 13 13 C 1.38809 * 120.00215 * 179.97438 * 11 10 8 14 14 N 1.31614 * 120.00296 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99970 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46992 * 89.99825 * 15 13 11 17 17 H 1.48493 * 109.47373 * 210.00108 * 15 13 11 18 18 H 1.48498 * 109.46802 * 330.00306 * 15 13 11 19 19 C 1.55160 * 102.94273 * 22.19176 * 8 7 6 20 20 C 1.53002 * 111.00175 * 82.56782 * 19 8 7 21 21 C 1.53000 * 111.00476 * 206.38078 * 19 8 7 22 22 C 1.47428 * 125.65436 * 184.08828 * 6 4 2 23 23 C 1.50702 * 109.47144 * 239.99863 * 2 1 3 24 24 C 1.38237 * 119.99797 * 231.49248 * 23 2 1 25 25 C 1.38235 * 119.99737 * 179.76636 * 24 23 2 26 26 C 1.38238 * 119.99811 * 0.48873 * 25 24 23 27 27 C 1.38239 * 120.00268 * 359.78522 * 26 25 24 28 28 C 1.38232 * 119.99869 * 51.77083 * 23 2 1 29 29 H 1.08999 * 109.47231 * 283.58189 * 1 2 3 30 30 H 1.09008 * 109.47045 * 43.57856 * 1 2 3 31 31 H 1.09001 * 109.47493 * 163.57826 * 1 2 3 32 32 H 1.09002 * 109.47025 * 185.56433 * 3 2 1 33 33 H 1.08999 * 109.46960 * 305.56669 * 3 2 1 34 34 H 1.09004 * 109.47216 * 65.57024 * 3 2 1 35 35 H 1.08999 * 109.87933 * 300.44094 * 7 6 4 36 36 H 1.09004 * 109.88018 * 61.60353 * 7 6 4 37 37 H 0.97002 * 119.99732 * 93.54271 * 10 8 7 38 38 H 0.97005 * 120.00532 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47032 * 60.00383 * 20 19 8 40 40 H 1.09004 * 109.47301 * 179.97438 * 20 19 8 41 41 H 1.08992 * 109.47670 * 300.00627 * 20 19 8 42 42 H 1.09001 * 109.46574 * 60.00446 * 21 19 8 43 43 H 1.09001 * 109.47045 * 179.97438 * 21 19 8 44 44 H 1.08990 * 109.47186 * 300.00214 * 21 19 8 45 45 H 1.09002 * 110.36419 * 274.74829 * 22 6 4 46 46 H 1.08991 * 110.36297 * 37.07322 * 22 6 4 47 47 H 1.07999 * 120.00534 * 359.97438 * 24 23 2 48 48 H 1.07992 * 120.00402 * 180.25107 * 25 24 23 49 49 H 1.08009 * 120.00136 * 179.77004 * 26 25 24 50 50 H 1.07997 * 120.00133 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00054 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7567 -0.1311 2.0119 6 7 1.6809 -1.9912 1.4598 7 6 0.8934 -2.8392 0.5529 8 6 0.7192 -4.2089 1.2422 9 1 -0.2844 -4.6000 1.0748 10 7 1.7291 -5.1591 0.7696 11 6 1.5002 -5.8952 -0.3622 12 1 0.5749 -5.7754 -0.9063 13 6 2.4572 -6.7952 -0.8102 14 7 2.2370 -7.5030 -1.8978 15 14 4.0579 -7.0018 0.1304 16 1 3.8965 -8.0650 1.1546 17 1 5.1404 -7.3827 -0.8121 18 1 4.4092 -5.7220 0.7967 19 6 0.9347 -3.8733 2.7416 20 6 -0.3488 -3.3286 3.3716 21 6 1.4433 -5.0951 3.5094 22 6 2.0280 -2.7760 2.6586 23 6 2.0323 -0.7104 -1.2305 24 6 2.9654 -1.7233 -1.1112 25 6 3.4226 -2.3783 -2.2394 26 6 2.9542 -2.0135 -3.4878 27 6 2.0253 -0.9967 -3.6076 28 6 1.5642 -0.3453 -2.4788 29 1 -0.3634 0.2413 0.9989 30 1 -0.3633 0.7445 -0.7085 31 1 -0.3634 -0.9857 -0.2905 32 1 3.1254 1.4441 -0.0996 33 1 1.5975 1.9843 -0.8359 34 1 1.7604 1.9268 0.9357 35 1 -0.0822 -2.3864 0.3759 36 1 1.4233 -2.9641 -0.3914 37 1 2.5600 -5.2669 1.2585 38 1 2.9060 -8.1317 -2.2111 39 1 -1.1386 -4.0755 3.2907 40 1 -0.1699 -3.1020 4.4227 41 1 -0.6525 -2.4208 2.8505 42 1 2.3924 -5.4218 3.0846 43 1 1.5862 -4.8319 4.5575 44 1 0.7142 -5.9015 3.4331 45 1 3.0137 -3.2272 2.5443 46 1 1.9995 -2.1447 3.5466 47 1 3.3348 -2.0053 -0.1363 48 1 4.1486 -3.1723 -2.1460 49 1 3.3141 -2.5227 -4.3697 50 1 1.6596 -0.7115 -4.5829 51 1 0.8383 0.4488 -2.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996582646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:21 Heat of formation + Delta-G solvation = 12.341403 kcal Electronic energy + Delta-G solvation = -31057.770886 eV Core-core repulsion = 27343.567372 eV Total energy + Delta-G solvation = -3714.203514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94385 -38.96283 -37.97548 -35.05593 -34.05533 -33.20925 -31.10897 -30.68539 -29.61163 -28.31865 -27.43579 -26.93875 -26.40171 -24.03448 -23.20136 -22.29029 -21.66320 -20.61374 -19.12603 -18.42721 -17.60142 -17.29682 -16.23317 -15.73349 -15.26692 -15.08899 -14.66238 -14.49670 -14.16667 -13.94746 -13.90986 -13.52573 -13.40814 -13.05839 -12.87803 -12.74786 -12.54698 -12.49180 -12.36290 -12.12980 -12.05493 -11.86054 -11.74462 -11.69611 -11.54345 -11.36612 -11.03398 -10.98573 -10.84013 -10.64979 -10.54080 -10.52713 -10.30257 -9.92360 -9.63134 -9.50389 -9.03317 -8.61960 -8.46892 -8.20881 -7.36603 -5.84276 -3.20431 1.57238 1.67098 2.82135 3.24882 3.30179 3.33189 3.39755 4.01696 4.46980 4.51376 4.66206 4.73535 4.95875 4.99328 5.06770 5.15270 5.19941 5.24191 5.27825 5.40690 5.47637 5.53722 5.57581 5.63729 5.69128 5.71050 5.74812 5.78615 5.79534 5.86319 5.91797 5.96000 6.02679 6.08382 6.11858 6.15821 6.20678 6.22415 6.25259 6.27890 6.34802 6.48836 6.56476 6.66622 6.69687 6.72835 6.77953 6.85884 7.23354 7.82521 7.90678 8.34145 8.38226 9.11681 9.84223 10.03141 11.33571 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.006384 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.910975 B = 4385.108314 C = 6142.470872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C -0.120 4.120 4 C 0.539 3.461 5 O -0.552 6.552 6 N -0.603 5.603 7 C 0.057 3.943 8 C 0.184 3.816 9 H 0.076 0.924 10 N -0.736 5.736 11 C -0.243 4.243 12 H 0.091 0.909 13 C 0.013 3.987 14 N -0.929 5.929 15 Si 0.874 3.126 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.091 4.091 20 C -0.128 4.128 21 C -0.127 4.127 22 C 0.118 3.882 23 C -0.079 4.079 24 C -0.103 4.103 25 C -0.100 4.100 26 C -0.114 4.114 27 C -0.122 4.122 28 C -0.113 4.113 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.363 0.637 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 14.127 3.593 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 C -0.178 4.178 4 C 0.327 3.673 5 O -0.430 6.430 6 N -0.335 5.335 7 C -0.068 4.068 8 C 0.073 3.927 9 H 0.094 0.906 10 N -0.378 5.378 11 C -0.373 4.373 12 H 0.109 0.891 13 C -0.183 4.183 14 N -0.576 5.576 15 Si 0.704 3.296 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.093 4.093 20 C -0.186 4.186 21 C -0.185 4.185 22 C -0.004 4.004 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.140 4.140 28 C -0.131 4.131 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.802 14.369 3.768 15.334 hybrid contribution 1.284 -0.435 0.442 1.426 sum -2.519 13.934 4.210 14.772 Atomic orbital electron populations 1.22063 0.92087 1.03585 1.02429 1.19688 0.97174 0.96171 0.90772 1.21658 1.01780 0.92354 1.01978 1.20007 0.80066 0.80370 0.86834 1.90662 1.37313 1.66200 1.48855 1.48429 1.53432 1.10734 1.20906 1.23710 0.94968 0.92470 0.95669 1.21193 0.94369 0.87854 0.89290 0.90572 1.42785 1.17898 1.46353 1.30775 1.19002 1.03350 1.14611 1.00290 0.89095 1.24590 0.97768 0.98758 0.97233 1.69683 1.35374 1.28665 1.23892 0.86724 0.85233 0.77867 0.79735 1.20971 1.21729 1.20394 1.22080 0.95197 0.95030 0.96989 1.21656 0.96229 1.00817 0.99878 1.21593 1.01897 0.96700 0.98264 1.22302 0.97782 0.92339 0.88002 1.19417 0.97981 0.97092 0.93412 1.21151 0.96527 0.95274 0.99180 1.21147 0.99741 0.98649 0.92296 1.21158 0.97420 0.97059 0.97609 1.21035 0.97954 0.96886 0.98146 1.20776 1.00355 1.00290 0.91650 0.92128 0.91433 0.90641 0.92016 0.91995 0.91728 0.91912 0.88742 0.80296 0.93038 0.92121 0.92777 0.92687 0.92343 0.93225 0.91608 0.91826 0.91099 0.86145 0.85953 0.86207 0.86327 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.54 37.16 0.28 -1.35 16 2 C -0.04 -0.48 0.59 -156.82 -0.09 -0.57 16 3 C -0.12 -1.49 7.62 37.16 0.28 -1.20 16 4 C 0.54 8.85 5.07 -10.99 -0.06 8.80 16 5 O -0.55 -10.60 16.22 5.55 0.09 -10.51 16 6 N -0.60 -9.60 2.49 -170.38 -0.42 -10.02 16 7 C 0.06 0.92 4.64 -3.06 -0.01 0.91 16 8 C 0.18 3.18 2.85 -66.10 -0.19 3.00 16 9 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 10 N -0.74 -15.69 4.42 -51.65 -0.23 -15.91 16 11 C -0.24 -6.27 10.46 -15.06 -0.16 -6.43 16 12 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 13 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 14 N -0.93 -27.73 13.97 55.49 0.78 -26.95 16 15 Si 0.87 21.18 27.74 -169.99 -4.71 16.47 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 19 C -0.09 -1.32 0.84 -152.24 -0.13 -1.45 16 20 C -0.13 -1.54 8.58 37.16 0.32 -1.22 16 21 C -0.13 -1.81 8.22 37.16 0.31 -1.50 16 22 C 0.12 1.84 5.81 -2.41 -0.01 1.83 16 23 C -0.08 -1.14 3.76 -104.62 -0.39 -1.54 16 24 C -0.10 -1.74 6.28 -39.58 -0.25 -1.98 16 25 C -0.10 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.11 -1.70 10.05 -39.58 -0.40 -2.10 16 27 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 28 C -0.11 -1.45 8.97 -39.58 -0.35 -1.81 16 29 H 0.06 0.66 8.03 -51.93 -0.42 0.25 16 30 H 0.07 0.62 7.48 -51.92 -0.39 0.23 16 31 H 0.07 0.90 5.14 -51.93 -0.27 0.63 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.62 7.97 -51.93 -0.41 0.20 16 34 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 35 H 0.06 0.92 5.37 -51.93 -0.28 0.64 16 36 H 0.09 1.78 4.88 -51.93 -0.25 1.52 16 37 H 0.36 7.84 3.98 -40.82 -0.16 7.67 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 42 H 0.06 0.93 6.39 -51.93 -0.33 0.60 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.08 7.99 -51.93 -0.41 0.66 16 46 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 47 H 0.12 2.23 5.85 -52.49 -0.31 1.93 16 48 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 49 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 50 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 51 H 0.12 1.23 7.46 -52.49 -0.39 0.83 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -30.33 386.14 -8.69 -39.02 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -8.26 Total: 12.53 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.75 Total: -10.45 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.12 Total: -52.88 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.33 -8.69 -39.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996582646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.364 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds