Wall clock time and date at job start Tue Mar 31 2020 16:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 C 1.50696 * 109.46984 * 119.99967 * 2 1 3 5 5 O 1.21288 * 120.00075 * 238.16454 * 4 2 1 6 6 N 1.34775 * 120.00374 * 58.43874 * 4 2 1 7 7 C 1.47029 * 125.64407 * 4.40074 * 6 4 2 8 8 C 1.54320 * 107.27165 * 181.01927 * 7 6 4 9 9 H 1.09003 * 110.72192 * 140.55658 * 8 7 6 10 10 N 1.46499 * 110.72426 * 263.65113 * 8 7 6 11 11 C 1.36932 * 120.00042 * 273.54921 * 10 8 7 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 8 13 13 C 1.38809 * 120.00215 * 179.97438 * 11 10 8 14 14 N 1.31614 * 120.00296 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99970 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46992 * 89.99825 * 15 13 11 17 17 H 1.48493 * 109.47373 * 210.00108 * 15 13 11 18 18 H 1.48498 * 109.46802 * 330.00306 * 15 13 11 19 19 C 1.55160 * 102.94273 * 22.19176 * 8 7 6 20 20 C 1.53002 * 111.00175 * 82.56782 * 19 8 7 21 21 C 1.53000 * 111.00476 * 206.38078 * 19 8 7 22 22 C 1.47428 * 125.65436 * 184.08828 * 6 4 2 23 23 C 1.50702 * 109.47144 * 239.99863 * 2 1 3 24 24 C 1.38237 * 119.99797 * 231.49248 * 23 2 1 25 25 C 1.38235 * 119.99737 * 179.76636 * 24 23 2 26 26 C 1.38238 * 119.99811 * 0.48873 * 25 24 23 27 27 C 1.38239 * 120.00268 * 359.78522 * 26 25 24 28 28 C 1.38232 * 119.99869 * 51.77083 * 23 2 1 29 29 H 1.08999 * 109.47231 * 283.58189 * 1 2 3 30 30 H 1.09008 * 109.47045 * 43.57856 * 1 2 3 31 31 H 1.09001 * 109.47493 * 163.57826 * 1 2 3 32 32 H 1.09002 * 109.47025 * 185.56433 * 3 2 1 33 33 H 1.08999 * 109.46960 * 305.56669 * 3 2 1 34 34 H 1.09004 * 109.47216 * 65.57024 * 3 2 1 35 35 H 1.08999 * 109.87933 * 300.44094 * 7 6 4 36 36 H 1.09004 * 109.88018 * 61.60353 * 7 6 4 37 37 H 0.97002 * 119.99732 * 93.54271 * 10 8 7 38 38 H 0.97005 * 120.00532 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47032 * 60.00383 * 20 19 8 40 40 H 1.09004 * 109.47301 * 179.97438 * 20 19 8 41 41 H 1.08992 * 109.47670 * 300.00627 * 20 19 8 42 42 H 1.09001 * 109.46574 * 60.00446 * 21 19 8 43 43 H 1.09001 * 109.47045 * 179.97438 * 21 19 8 44 44 H 1.08990 * 109.47186 * 300.00214 * 21 19 8 45 45 H 1.09002 * 110.36419 * 274.74829 * 22 6 4 46 46 H 1.08991 * 110.36297 * 37.07322 * 22 6 4 47 47 H 1.07999 * 120.00534 * 359.97438 * 24 23 2 48 48 H 1.07992 * 120.00402 * 180.25107 * 25 24 23 49 49 H 1.08009 * 120.00136 * 179.77004 * 26 25 24 50 50 H 1.07997 * 120.00133 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00054 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7567 -0.1311 2.0119 6 7 1.6809 -1.9912 1.4598 7 6 0.8934 -2.8392 0.5529 8 6 0.7192 -4.2089 1.2422 9 1 -0.2844 -4.6000 1.0748 10 7 1.7291 -5.1591 0.7696 11 6 1.5002 -5.8952 -0.3622 12 1 0.5749 -5.7754 -0.9063 13 6 2.4572 -6.7952 -0.8102 14 7 2.2370 -7.5030 -1.8978 15 14 4.0579 -7.0018 0.1304 16 1 3.8965 -8.0650 1.1546 17 1 5.1404 -7.3827 -0.8121 18 1 4.4092 -5.7220 0.7967 19 6 0.9347 -3.8733 2.7416 20 6 -0.3488 -3.3286 3.3716 21 6 1.4433 -5.0951 3.5094 22 6 2.0280 -2.7760 2.6586 23 6 2.0323 -0.7104 -1.2305 24 6 2.9654 -1.7233 -1.1112 25 6 3.4226 -2.3783 -2.2394 26 6 2.9542 -2.0135 -3.4878 27 6 2.0253 -0.9967 -3.6076 28 6 1.5642 -0.3453 -2.4788 29 1 -0.3634 0.2413 0.9989 30 1 -0.3633 0.7445 -0.7085 31 1 -0.3634 -0.9857 -0.2905 32 1 3.1254 1.4441 -0.0996 33 1 1.5975 1.9843 -0.8359 34 1 1.7604 1.9268 0.9357 35 1 -0.0822 -2.3864 0.3759 36 1 1.4233 -2.9641 -0.3914 37 1 2.5600 -5.2669 1.2585 38 1 2.9060 -8.1317 -2.2111 39 1 -1.1386 -4.0755 3.2907 40 1 -0.1699 -3.1020 4.4227 41 1 -0.6525 -2.4208 2.8505 42 1 2.3924 -5.4218 3.0846 43 1 1.5862 -4.8319 4.5575 44 1 0.7142 -5.9015 3.4331 45 1 3.0137 -3.2272 2.5443 46 1 1.9995 -2.1447 3.5466 47 1 3.3348 -2.0053 -0.1363 48 1 4.1486 -3.1723 -2.1460 49 1 3.3141 -2.5227 -4.3697 50 1 1.6596 -0.7115 -4.5829 51 1 0.8383 0.4488 -2.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996582646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:20 Heat of formation + Delta-G solvation = -3.905674 kcal Electronic energy + Delta-G solvation = -31058.475412 eV Core-core repulsion = 27343.567372 eV Total energy + Delta-G solvation = -3714.908040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18201 -40.19513 -39.27722 -36.20869 -35.82389 -34.52716 -33.01744 -31.83899 -30.71625 -29.77200 -28.46208 -28.10446 -27.54739 -25.62415 -24.51944 -23.44535 -23.12392 -21.86736 -20.60720 -19.67965 -19.36356 -18.49507 -17.49608 -17.17701 -16.53615 -16.32048 -16.26204 -15.97158 -15.47769 -15.25843 -15.09612 -14.81866 -14.57233 -14.51555 -14.20838 -14.07222 -13.78470 -13.77914 -13.60853 -13.40241 -13.12250 -13.01872 -12.92278 -12.86017 -12.80989 -12.80468 -12.65756 -12.29782 -12.04782 -12.01223 -11.94582 -11.84093 -11.65673 -11.55751 -11.29999 -11.01171 -10.74660 -9.82326 -9.65678 -9.49785 -9.28070 -7.99870 -5.30871 0.42406 0.50965 1.32783 1.33684 1.39635 1.53806 2.00477 2.45844 2.86567 3.26260 3.30498 3.49763 3.58087 3.60892 3.79819 3.96078 3.99672 4.07430 4.08304 4.17985 4.26185 4.29277 4.41860 4.48707 4.57160 4.59492 4.65460 4.71651 4.73434 4.83089 4.85862 4.87240 4.90688 4.96247 5.00691 5.05375 5.06692 5.10350 5.13271 5.21593 5.25736 5.30523 5.34979 5.39240 5.49692 5.57376 5.62193 5.67045 5.81531 6.10074 6.23832 6.53192 7.07826 7.10556 7.85559 8.03227 9.21379 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.006384 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.910975 B = 4385.108314 C = 6142.470872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C -0.116 4.116 4 C 0.533 3.467 5 O -0.585 6.585 6 N -0.600 5.600 7 C 0.069 3.931 8 C 0.173 3.827 9 H 0.079 0.921 10 N -0.738 5.738 11 C -0.211 4.211 12 H 0.066 0.934 13 C -0.049 4.049 14 N -0.977 5.977 15 Si 0.930 3.070 16 H -0.277 1.277 17 H -0.302 1.302 18 H -0.267 1.267 19 C -0.077 4.077 20 C -0.122 4.122 21 C -0.127 4.127 22 C 0.115 3.885 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.116 4.116 28 C -0.103 4.103 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.362 0.638 38 H 0.254 0.746 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.129 0.871 50 H 0.154 0.846 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 16.731 4.218 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.174 4.174 4 C 0.323 3.677 5 O -0.466 6.466 6 N -0.331 5.331 7 C -0.056 4.056 8 C 0.063 3.937 9 H 0.096 0.904 10 N -0.380 5.380 11 C -0.342 4.342 12 H 0.084 0.916 13 C -0.241 4.241 14 N -0.628 5.628 15 Si 0.760 3.240 16 H -0.204 1.204 17 H -0.229 1.229 18 H -0.192 1.192 19 C -0.079 4.079 20 C -0.180 4.180 21 C -0.184 4.184 22 C -0.007 4.007 23 C -0.079 4.079 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.133 4.133 28 C -0.121 4.121 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.196 0.804 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.117 0.883 49 H 0.147 0.853 50 H 0.171 0.829 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.952 17.007 4.439 18.557 hybrid contribution 1.897 -1.168 0.251 2.242 sum -4.056 15.839 4.690 17.009 Atomic orbital electron populations 1.22076 0.89682 1.04211 1.03795 1.19777 0.98947 0.96238 0.88585 1.21667 1.00686 0.91688 1.03349 1.20636 0.79359 0.80274 0.87404 1.90640 1.38730 1.66912 1.50305 1.48446 1.53153 1.10738 1.20777 1.23456 0.95767 0.92022 0.94352 1.21453 0.93169 0.87364 0.91665 0.90363 1.42775 1.18877 1.46792 1.29547 1.18943 1.01593 1.13215 1.00400 0.91575 1.25157 1.00856 0.99643 0.98403 1.69828 1.36443 1.30396 1.26108 0.85790 0.81591 0.78217 0.78399 1.20372 1.22912 1.19210 1.22040 0.96200 0.94718 0.94910 1.21630 0.94665 1.01011 1.00655 1.21598 1.00640 0.96481 0.99710 1.22335 0.97300 0.92778 0.88324 1.19546 0.97245 0.96315 0.94822 1.20977 0.98202 0.97004 0.97744 1.21124 1.00707 0.99184 0.93767 1.21366 0.98130 0.98029 0.96902 1.21445 0.96479 0.95445 0.99968 1.21181 1.00057 1.00458 0.90414 0.91569 0.88284 0.91322 0.94042 0.88728 0.91786 0.89433 0.91232 0.80368 0.93651 0.91111 0.90990 0.92430 0.94527 0.90544 0.91731 0.93906 0.90228 0.88966 0.88255 0.85290 0.82867 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.54 71.98 0.54 -2.08 16 2 C -0.03 -0.81 0.59 -53.68 -0.03 -0.85 16 3 C -0.12 -2.58 7.62 71.98 0.55 -2.03 16 4 C 0.53 17.16 5.07 87.66 0.44 17.61 16 5 O -0.58 -22.44 16.22 -3.05 -0.05 -22.49 16 6 N -0.60 -18.77 2.49 -811.34 -2.02 -20.79 16 7 C 0.07 2.18 4.64 86.73 0.40 2.59 16 8 C 0.17 5.87 2.85 46.18 0.13 6.00 16 9 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16 10 N -0.74 -31.83 4.42 -317.33 -1.40 -33.23 16 11 C -0.21 -11.14 10.46 84.03 0.88 -10.27 16 12 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 13 C -0.05 -2.76 5.50 84.86 0.47 -2.30 16 14 N -0.98 -60.51 13.97 21.65 0.30 -60.21 16 15 Si 0.93 45.33 27.74 68.60 1.90 47.23 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 18 H -0.27 -12.27 6.52 99.48 0.65 -11.62 16 19 C -0.08 -2.11 0.84 -50.71 -0.04 -2.15 16 20 C -0.12 -2.55 8.58 71.98 0.62 -1.93 16 21 C -0.13 -3.42 8.22 71.98 0.59 -2.83 16 22 C 0.12 3.53 5.81 86.93 0.51 4.03 16 23 C -0.08 -2.18 3.76 -19.87 -0.07 -2.25 16 24 C -0.12 -4.19 6.28 22.27 0.14 -4.05 16 25 C -0.13 -4.60 10.05 22.27 0.22 -4.38 16 26 C -0.13 -3.73 10.05 22.27 0.22 -3.50 16 27 C -0.12 -2.71 10.05 22.27 0.22 -2.48 16 28 C -0.10 -2.30 8.97 22.27 0.20 -2.10 16 29 H 0.07 1.19 8.03 -2.39 -0.02 1.17 16 30 H 0.10 1.26 7.48 -2.38 -0.02 1.24 16 31 H 0.07 1.38 5.14 -2.39 -0.01 1.37 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.45 7.97 -2.39 -0.02 1.43 16 34 H 0.06 1.43 7.96 -2.38 -0.02 1.41 16 35 H 0.09 2.37 5.37 -2.39 -0.01 2.35 16 36 H 0.07 2.65 4.88 -2.38 -0.01 2.64 16 37 H 0.36 15.84 3.98 -92.71 -0.37 15.47 16 38 H 0.25 15.27 8.31 -92.70 -0.77 14.49 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.06 1.19 7.91 -2.39 -0.02 1.17 16 42 H 0.04 1.14 6.39 -2.39 -0.02 1.13 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.48 7.99 -2.39 -0.02 1.46 16 46 H 0.08 2.30 8.00 -2.39 -0.02 2.28 16 47 H 0.09 3.64 5.85 -2.91 -0.02 3.63 16 48 H 0.10 3.81 8.06 -2.91 -0.02 3.79 16 49 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 50 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 51 H 0.16 2.30 7.46 -2.91 -0.02 2.28 16 Total: -1.00 -69.50 386.14 5.22 -64.28 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.49 Total: 38.18 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.99 Total: -12.97 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.12 Total: -114.23 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -69.50 5.22 -64.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996582646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.374 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds