Wall clock time and date at job start Tue Mar 31 2020 16:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47268 * 2 1 4 4 C 1.38234 * 120.00350 * 90.00151 * 3 2 1 5 5 C 1.38235 * 120.00313 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00120 * 359.95813 * 5 4 3 7 7 C 1.50701 * 120.00010 * 179.71728 * 6 5 4 8 8 H 1.08996 * 109.46945 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47262 * 239.99904 * 7 6 5 10 10 C 1.50703 * 109.46598 * 120.00305 * 7 6 5 11 11 O 1.21278 * 120.00274 * 93.04068 * 10 7 6 12 12 N 1.34780 * 119.99841 * 273.03791 * 10 7 6 13 13 C 1.46932 * 120.62955 * 5.15234 * 12 10 7 14 14 C 1.53625 * 108.53952 * 126.36765 * 13 12 10 15 15 C 1.53042 * 109.24259 * 54.85922 * 14 13 12 16 16 N 1.46499 * 109.46191 * 178.48802 * 15 14 13 17 17 C 1.36935 * 120.00003 * 275.06863 * 16 15 14 18 18 H 1.08000 * 119.99807 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99645 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99398 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00370 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46931 * 89.99861 * 21 19 17 23 23 H 1.48503 * 109.47234 * 209.99930 * 21 19 17 24 24 H 1.48494 * 109.46931 * 329.99884 * 21 19 17 25 25 C 1.53040 * 109.53450 * 298.50754 * 15 14 13 26 26 C 1.46920 * 120.62968 * 185.43394 * 12 10 7 27 27 C 1.38238 * 119.99900 * 359.97438 * 6 5 4 28 28 C 1.38234 * 119.99851 * 0.09142 * 27 6 5 29 29 H 1.09005 * 109.47304 * 299.99972 * 1 2 3 30 30 H 1.08997 * 109.47208 * 59.99953 * 1 2 3 31 31 H 1.08997 * 109.47686 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46889 * 239.99707 * 2 1 3 33 33 H 1.08997 * 109.47208 * 120.00047 * 2 1 3 34 34 H 1.08003 * 119.99850 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.99951 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47204 * 175.20691 * 9 7 6 37 37 H 1.08999 * 109.47603 * 295.20967 * 9 7 6 38 38 H 1.09006 * 109.47021 * 55.20772 * 9 7 6 39 39 H 1.08993 * 109.58738 * 246.20114 * 13 12 10 40 40 H 1.09003 * 109.58482 * 6.63171 * 13 12 10 41 41 H 1.08999 * 109.63587 * 294.86826 * 14 13 12 42 42 H 1.08999 * 109.42788 * 174.72452 * 14 13 12 43 43 H 1.08999 * 109.45061 * 58.51881 * 15 14 13 44 44 H 0.97002 * 119.99600 * 95.06753 * 16 15 14 45 45 H 0.97005 * 119.99427 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.50216 * 301.41255 * 25 15 14 47 47 H 1.09005 * 109.49430 * 181.31428 * 25 15 14 48 48 H 1.08992 * 109.58817 * 353.37372 * 26 12 10 49 49 H 1.08999 * 109.58861 * 113.65723 * 26 12 10 50 50 H 1.07995 * 120.00155 * 179.97438 * 27 6 5 51 51 H 1.08001 * 119.99778 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9538 4.0274 0.0000 7 6 3.4496 5.4506 0.0000 8 1 3.5666 5.7945 1.0276 9 6 2.4397 6.3424 -0.7249 10 6 4.7787 5.5194 -0.7069 11 8 4.8230 5.7736 -1.8919 12 7 5.9184 5.2984 -0.0221 13 6 5.8766 4.8794 1.3856 14 6 6.7094 3.5975 1.5386 15 6 8.1198 3.8448 0.9984 16 7 8.9290 2.6364 1.1749 17 6 9.5655 2.4065 2.3653 18 1 9.4714 3.1163 3.1739 19 6 10.3318 1.2613 2.5327 20 7 10.9441 1.0406 3.6768 21 14 10.4940 0.0333 1.1345 22 1 11.6636 0.3929 0.2931 23 1 10.6858 -1.3296 1.6923 24 1 9.2616 0.0604 0.3065 25 6 8.0438 4.1947 -0.4896 26 6 7.2261 5.4779 -0.6672 27 6 2.7247 3.3753 -1.1972 28 6 2.2631 2.0723 -1.1972 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0824 1.5635 2.1324 35 1 2.9028 3.8851 2.1324 36 1 2.7554 7.3831 -0.6513 37 1 2.3862 6.0524 -1.7743 38 1 1.4578 6.2272 -0.2657 39 1 6.2937 5.6665 2.0136 40 1 4.8450 4.6836 1.6781 41 1 6.2419 2.7880 0.9780 42 1 6.7660 3.3256 2.5926 43 1 8.5773 4.6709 1.5428 44 1 9.0138 1.9991 0.4486 45 1 11.4793 0.2401 3.7939 46 1 7.5638 3.3796 -1.0310 47 1 9.0503 4.3478 -0.8791 48 1 7.0852 5.6773 -1.7295 49 1 7.7500 6.3145 -0.2048 50 1 2.9045 3.8844 -2.1325 51 1 2.0837 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997101843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:32 Heat of formation + Delta-G solvation = -31.725983 kcal Electronic energy + Delta-G solvation = -29121.557046 eV Core-core repulsion = 25405.442627 eV Total energy + Delta-G solvation = -3716.114419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69336 -40.18759 -38.84955 -36.26439 -36.11743 -33.96669 -33.44474 -32.09300 -31.76496 -31.47635 -29.44897 -26.99142 -25.68577 -24.44304 -24.38356 -23.68708 -23.15024 -21.90137 -21.37089 -20.02616 -19.36215 -18.39181 -17.53330 -16.88164 -16.72819 -16.41184 -16.16652 -15.91248 -15.73146 -15.08537 -15.07706 -14.89337 -14.66685 -14.61715 -14.57101 -14.29606 -14.08791 -13.99490 -13.67029 -13.37206 -13.24143 -13.15046 -12.97587 -12.84901 -12.64463 -12.52137 -12.29162 -12.21181 -12.14698 -12.04288 -11.96786 -11.79021 -11.69846 -11.61472 -11.35384 -10.99672 -10.78502 -9.82843 -9.68579 -9.42821 -9.30453 -8.01776 -5.34274 0.34030 0.49146 1.37207 1.38389 1.45572 1.57588 2.00498 2.47776 2.79021 3.29516 3.46234 3.57246 3.68191 3.81360 3.89567 3.93389 4.01910 4.07196 4.12018 4.14406 4.25794 4.35210 4.37604 4.39172 4.49855 4.55827 4.57506 4.66540 4.68971 4.74341 4.79008 4.81815 4.87053 4.92024 5.00116 5.03016 5.04541 5.08161 5.13194 5.19536 5.24509 5.27787 5.36784 5.46103 5.50772 5.58486 5.64802 5.72625 5.78579 6.08741 6.22667 6.40327 7.08087 7.12735 7.84974 8.03029 9.19625 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.003886 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.580043 B = 7203.461312 C = 9093.812552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.087 4.087 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.088 4.088 7 C -0.066 4.066 8 H 0.123 0.877 9 C -0.127 4.127 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.606 5.606 13 C 0.112 3.888 14 C -0.137 4.137 15 C 0.177 3.823 16 N -0.753 5.753 17 C -0.223 4.223 18 H 0.064 0.936 19 C -0.061 4.061 20 N -0.982 5.982 21 Si 0.948 3.052 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.260 1.260 25 C -0.131 4.131 26 C 0.120 3.880 27 C -0.117 4.117 28 C -0.129 4.129 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.361 0.639 45 H 0.257 0.743 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.112 0.888 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.331 6.831 -7.549 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.142 4.142 5 C -0.126 4.126 6 C -0.089 4.089 7 C -0.086 4.086 8 H 0.141 0.859 9 C -0.184 4.184 10 C 0.311 3.689 11 O -0.458 6.458 12 N -0.338 5.338 13 C -0.010 4.010 14 C -0.178 4.178 15 C 0.069 3.931 16 N -0.396 5.396 17 C -0.354 4.354 18 H 0.082 0.918 19 C -0.252 4.252 20 N -0.633 5.633 21 Si 0.776 3.224 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.185 1.185 25 C -0.170 4.170 26 C -0.003 4.003 27 C -0.135 4.135 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.130 0.870 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.217 7.010 -7.956 25.524 hybrid contribution 0.828 -1.206 -0.618 1.588 sum -22.389 5.804 -8.574 24.667 Atomic orbital electron populations 1.21704 0.93681 1.02388 1.02053 1.20602 0.96987 0.91664 1.03252 1.20177 0.98380 0.97009 0.93126 1.21279 0.99693 0.94963 0.98220 1.21284 0.98715 0.95008 0.97630 1.19453 1.01240 0.94400 0.93795 1.20367 0.91526 0.94225 1.02531 0.85920 1.21644 0.98021 0.98478 1.00289 1.20964 0.86192 0.75042 0.86734 1.90634 1.87583 1.50884 1.16690 1.48244 1.05803 1.66610 1.13154 1.22032 1.02123 0.96294 0.80587 1.22446 0.96760 0.97124 1.01466 1.20394 0.90127 0.88303 0.94282 1.42866 1.58910 1.24329 1.13452 1.19040 1.20842 1.04071 0.91411 0.91819 1.25386 1.00342 1.00435 0.99060 1.69868 1.38261 1.29152 1.26044 0.85515 0.78467 0.78711 0.79685 1.20624 1.22378 1.18483 1.22100 1.00668 0.97793 0.96442 1.21536 0.82468 0.97004 0.99305 1.21082 0.99256 0.95257 0.97901 1.21164 1.00408 0.94710 0.98365 0.92472 0.92853 0.91299 0.90982 0.90563 0.84435 0.83619 0.91535 0.92927 0.90020 0.89387 0.87851 0.93588 0.91734 0.92872 0.80611 0.93452 0.93050 0.90195 0.89739 0.89549 0.87016 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.09 -1.41 6.06 29.85 0.18 -1.23 16 3 C -0.09 -1.73 5.13 -19.87 -0.10 -1.84 16 4 C -0.12 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.11 -2.01 8.74 22.27 0.19 -1.82 16 6 C -0.09 -1.85 4.54 -19.87 -0.09 -1.94 16 7 C -0.07 -1.27 2.10 -12.29 -0.03 -1.30 16 8 H 0.12 1.75 6.38 -2.39 -0.02 1.74 16 9 C -0.13 -2.24 8.59 71.98 0.62 -1.62 16 10 C 0.52 13.61 6.41 87.66 0.56 14.17 16 11 O -0.58 -18.81 15.37 -3.02 -0.05 -18.85 16 12 N -0.61 -15.24 2.97 -818.07 -2.43 -17.67 16 13 C 0.11 2.54 6.17 86.51 0.53 3.07 16 14 C -0.14 -4.28 5.67 30.82 0.17 -4.11 16 15 C 0.18 6.29 2.73 45.02 0.12 6.41 16 16 N -0.75 -34.29 4.92 -322.81 -1.59 -35.88 16 17 C -0.22 -12.29 10.41 84.03 0.87 -11.42 16 18 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 19 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 20 N -0.98 -62.13 13.97 21.65 0.30 -61.83 16 21 Si 0.95 45.68 27.73 68.60 1.90 47.58 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 25 C -0.13 -3.96 5.55 30.67 0.17 -3.79 16 26 C 0.12 3.11 6.44 86.36 0.56 3.67 16 27 C -0.12 -2.74 8.87 22.27 0.20 -2.55 16 28 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.13 8.09 -2.38 -0.02 1.11 16 33 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.15 1.97 7.43 -2.91 -0.02 1.94 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.12 7.10 -2.39 -0.02 1.10 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.10 1.88 4.03 -2.39 -0.01 1.87 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 44 H 0.36 16.30 5.66 -92.71 -0.52 15.78 16 45 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.08 2.32 7.00 -2.39 -0.02 2.30 16 49 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.11 2.85 7.56 -2.91 -0.02 2.82 16 51 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -70.69 399.36 4.04 -66.65 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.32 Total: 33.20 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.58 Total: -13.19 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.71 Total: -115.38 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.58 kcal Total: -70.69 4.04 -66.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997101843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.925 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds