Wall clock time and date at job start Tue Mar 31 2020 16:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46958 * 2 1 4 4 C 1.38238 * 119.99927 * 269.72512 * 3 2 1 5 5 C 1.38239 * 119.99712 * 179.76636 * 4 3 2 6 6 C 1.38240 * 120.00259 * 0.48773 * 5 4 3 7 7 C 1.50698 * 120.00176 * 179.76634 * 6 5 4 8 8 H 1.08992 * 109.46814 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47043 * 300.02056 * 7 6 5 10 10 C 1.50698 * 109.47092 * 60.02101 * 7 6 5 11 11 O 1.21275 * 120.00240 * 263.64236 * 10 7 6 12 12 N 1.34776 * 120.00131 * 83.63890 * 10 7 6 13 13 C 1.46934 * 120.62810 * 4.82054 * 12 10 7 14 14 C 1.52766 * 109.00572 * 233.58233 * 13 12 10 15 15 C 1.53036 * 109.38534 * 305.58958 * 14 13 12 16 16 N 1.46500 * 109.46171 * 181.26467 * 15 14 13 17 17 C 1.36935 * 120.00227 * 84.92804 * 16 15 14 18 18 H 1.08007 * 119.99741 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00240 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00447 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99581 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47086 * 90.00501 * 21 19 17 23 23 H 1.48501 * 109.46821 * 209.99830 * 21 19 17 24 24 H 1.48489 * 109.47411 * 330.00023 * 21 19 17 25 25 C 1.53040 * 109.53916 * 61.23974 * 15 14 13 26 26 C 1.46919 * 120.63300 * 185.10179 * 12 10 7 27 27 C 1.38237 * 119.99756 * 359.78727 * 6 5 4 28 28 C 1.38237 * 120.00116 * 359.96012 * 27 6 5 29 29 H 1.09002 * 109.47269 * 300.00254 * 1 2 3 30 30 H 1.08994 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46838 * 59.99834 * 1 2 3 32 32 H 1.09000 * 109.47237 * 119.99803 * 2 1 3 33 33 H 1.09004 * 109.46993 * 240.00209 * 2 1 3 34 34 H 1.07994 * 120.00331 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00256 * 180.25117 * 5 4 3 36 36 H 1.09002 * 109.46632 * 175.34424 * 9 7 6 37 37 H 1.09000 * 109.47055 * 295.34422 * 9 7 6 38 38 H 1.09001 * 109.46976 * 55.34742 * 9 7 6 39 39 H 1.08999 * 109.58421 * 353.41891 * 13 12 10 40 40 H 1.09002 * 109.58425 * 113.84352 * 13 12 10 41 41 H 1.09001 * 109.55807 * 185.55153 * 14 13 12 42 42 H 1.09000 * 109.35847 * 65.50130 * 14 13 12 43 43 H 1.09006 * 109.44767 * 301.23103 * 15 14 13 44 44 H 0.96996 * 119.99749 * 264.93381 * 16 15 14 45 45 H 0.96998 * 120.00753 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.49404 * 178.68483 * 25 15 14 47 47 H 1.08997 * 109.52358 * 58.60312 * 25 15 14 48 48 H 1.09001 * 109.59120 * 246.15569 * 26 12 10 49 49 H 1.08996 * 109.59165 * 6.43852 * 26 12 10 50 50 H 1.07999 * 120.00252 * 179.97438 * 27 6 5 51 51 H 1.07995 * 120.00420 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7242 3.3755 -1.1971 6 6 2.9542 4.0274 0.0000 7 6 3.4565 5.4482 0.0000 8 1 3.5777 5.7906 1.0276 9 6 4.8043 5.5126 -0.7212 10 6 2.4639 6.3319 -0.7104 11 8 2.6246 6.6057 -1.8808 12 7 1.3973 6.8179 -0.0450 13 6 1.2439 6.5827 1.3973 14 6 -0.1285 5.9640 1.6572 15 6 -1.2117 6.8562 1.0468 16 7 -2.5304 6.2800 1.3213 17 6 -3.1611 6.5474 2.5070 18 1 -2.6861 7.1826 3.2400 19 6 -4.4104 6.0011 2.7673 20 7 -5.0168 6.2584 3.9067 21 14 -5.2308 4.9006 1.5002 22 1 -4.8382 3.4890 1.7422 23 1 -6.7059 5.0303 1.6130 24 1 -4.8008 5.3076 0.1385 25 6 -1.0025 6.9530 -0.4661 26 6 0.3628 7.5876 -0.7492 27 6 2.7238 3.3757 1.1972 28 6 2.2627 2.0725 1.1972 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.0928 1.5599 -2.1324 35 1 2.9046 3.8846 -2.1324 36 1 5.1281 6.5509 -0.7940 37 1 5.5437 4.9398 -0.1615 38 1 4.7013 5.0932 -1.7220 39 1 2.0217 5.9008 1.7410 40 1 1.3223 7.5292 1.9322 41 1 -0.2917 5.8766 2.7314 42 1 -0.1715 4.9752 1.2005 43 1 -1.1519 7.8520 1.4861 44 1 -2.9568 5.7092 0.6631 45 1 -5.8896 5.8763 4.0887 46 1 -1.7879 7.5695 -0.9032 47 1 -1.0375 5.9552 -0.9033 48 1 0.3678 8.6178 -0.3929 49 1 0.5607 7.5708 -1.8209 50 1 2.9039 3.8847 2.1325 51 1 2.0831 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997101850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:35 Heat of formation + Delta-G solvation = -30.825389 kcal Electronic energy + Delta-G solvation = -29402.782404 eV Core-core repulsion = 25686.707037 eV Total energy + Delta-G solvation = -3716.075366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69626 -40.18482 -38.86762 -36.26396 -36.11807 -33.96329 -33.45790 -32.11624 -31.76916 -31.49272 -29.45610 -26.99759 -25.68783 -24.46788 -24.36205 -23.68726 -23.16057 -21.90116 -21.34627 -20.02239 -19.36275 -18.40789 -17.53209 -16.87268 -16.72699 -16.43497 -16.11720 -15.92683 -15.76421 -15.11377 -15.08046 -14.86990 -14.80221 -14.59883 -14.41084 -14.25797 -14.17168 -13.84329 -13.82358 -13.51341 -13.29850 -13.07340 -12.92131 -12.74855 -12.64326 -12.58689 -12.33310 -12.20261 -12.09201 -12.06790 -11.97582 -11.79193 -11.71781 -11.61967 -11.35210 -11.00001 -10.75765 -9.82247 -9.68314 -9.42905 -9.30453 -8.01376 -5.33856 0.34328 0.49795 1.37157 1.38246 1.45675 1.57568 2.00746 2.47961 2.79345 3.30327 3.47269 3.56110 3.68555 3.79486 3.90463 3.94014 4.00837 4.07268 4.12335 4.14682 4.25280 4.34323 4.37687 4.39240 4.48750 4.55007 4.58614 4.66026 4.67586 4.74809 4.78417 4.81496 4.86984 4.93681 5.00601 5.02469 5.03682 5.04181 5.13705 5.19537 5.24408 5.27871 5.34961 5.46469 5.50889 5.59108 5.64841 5.73105 5.78902 6.09265 6.22870 6.40504 7.08523 7.12650 7.85338 8.03484 9.20061 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.004374 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.705334 B = 6400.400303 C = 8352.257874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.086 4.086 7 C -0.067 4.067 8 H 0.123 0.877 9 C -0.125 4.125 10 C 0.522 3.478 11 O -0.578 6.578 12 N -0.605 5.605 13 C 0.112 3.888 14 C -0.137 4.137 15 C 0.177 3.823 16 N -0.753 5.753 17 C -0.222 4.222 18 H 0.063 0.937 19 C -0.060 4.060 20 N -0.983 5.983 21 Si 0.946 3.054 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.257 1.257 25 C -0.130 4.130 26 C 0.121 3.879 27 C -0.108 4.108 28 C -0.124 4.124 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.361 0.639 45 H 0.256 0.744 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.144 0.856 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.192 -8.158 -8.409 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.136 4.136 6 C -0.086 4.086 7 C -0.088 4.088 8 H 0.141 0.859 9 C -0.183 4.183 10 C 0.311 3.689 11 O -0.458 6.458 12 N -0.337 5.337 13 C -0.011 4.011 14 C -0.178 4.178 15 C 0.069 3.931 16 N -0.395 5.395 17 C -0.353 4.353 18 H 0.081 0.919 19 C -0.251 4.251 20 N -0.633 5.633 21 Si 0.775 3.225 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.182 1.182 25 C -0.169 4.169 26 C -0.002 4.002 27 C -0.125 4.125 28 C -0.142 4.142 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.194 0.806 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.162 0.838 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 21.225 -7.894 -8.819 24.302 hybrid contribution -1.361 -0.546 -0.464 1.538 sum 19.864 -8.440 -9.283 23.494 Atomic orbital electron populations 1.21754 0.95135 1.02278 1.01418 1.20570 0.95645 0.91782 1.03833 1.20185 0.98216 0.97255 0.93112 1.21164 1.00244 0.94765 0.98346 1.21080 0.99511 0.95128 0.97847 1.19419 1.01350 0.94116 0.93764 1.20371 0.94741 0.91089 1.02558 0.85886 1.21634 0.93643 1.02698 1.00300 1.20943 0.82011 0.79317 0.86626 1.90637 1.76179 1.60978 1.18006 1.48224 1.22007 1.53320 1.10110 1.21864 0.97763 1.02109 0.79320 1.22289 0.94693 0.99430 1.01359 1.20385 0.83776 0.95496 0.93446 1.42845 1.18918 1.59606 1.18114 1.19030 0.99103 1.23431 0.93751 0.91887 1.25369 0.98299 1.02651 0.98810 1.69854 1.16795 1.50936 1.25759 0.85538 0.77441 0.79351 0.80218 1.20755 1.22423 1.18221 1.22095 0.97341 1.01189 0.96304 1.21507 0.85469 0.95090 0.98141 1.21267 0.98648 0.94995 0.97632 1.21277 0.99543 0.95157 0.98222 0.93628 0.90990 0.93580 0.89818 0.90059 0.85341 0.86968 0.91930 0.89847 0.92933 0.87696 0.89668 0.91674 0.93229 0.93108 0.80599 0.93458 0.90380 0.92866 0.89896 0.89802 0.83811 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.89 71.98 0.71 -2.00 16 2 C -0.08 -1.31 6.07 29.85 0.18 -1.13 16 3 C -0.09 -1.76 5.13 -19.86 -0.10 -1.87 16 4 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 5 C -0.12 -2.74 8.77 22.27 0.20 -2.55 16 6 C -0.09 -1.81 4.68 -19.86 -0.09 -1.90 16 7 C -0.07 -1.30 2.11 -12.29 -0.03 -1.32 16 8 H 0.12 1.77 6.08 -2.39 -0.01 1.76 16 9 C -0.13 -2.22 8.51 71.98 0.61 -1.61 16 10 C 0.52 13.57 6.44 87.66 0.56 14.13 16 11 O -0.58 -18.71 15.60 -3.02 -0.05 -18.75 16 12 N -0.60 -15.17 2.98 -819.73 -2.44 -17.61 16 13 C 0.11 2.51 6.24 86.22 0.54 3.05 16 14 C -0.14 -4.19 5.64 30.53 0.17 -4.01 16 15 C 0.18 6.26 2.73 45.02 0.12 6.38 16 16 N -0.75 -34.02 4.92 -322.81 -1.59 -35.61 16 17 C -0.22 -12.22 10.41 84.03 0.87 -11.35 16 18 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 19 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 20 N -0.98 -62.02 13.97 21.65 0.30 -61.72 16 21 Si 0.95 45.42 27.74 68.60 1.90 47.33 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 25 C -0.13 -3.93 5.55 30.67 0.17 -3.76 16 26 C 0.12 3.17 6.42 86.36 0.55 3.72 16 27 C -0.11 -2.04 9.04 22.27 0.20 -1.84 16 28 C -0.12 -2.43 9.70 22.27 0.22 -2.22 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 33 H 0.08 1.12 8.08 -2.38 -0.02 1.10 16 34 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.11 2.81 7.55 -2.91 -0.02 2.79 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.09 7.12 -2.39 -0.02 1.07 16 39 H 0.11 1.84 4.35 -2.39 -0.01 1.83 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 44 H 0.36 16.18 5.66 -92.71 -0.52 15.66 16 45 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.08 2.32 7.04 -2.39 -0.02 2.30 16 50 H 0.14 2.04 7.53 -2.91 -0.02 2.02 16 51 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -70.24 400.10 4.03 -66.21 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.32 Total: 33.95 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.58 Total: -13.79 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.73 Total: -114.94 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.33 kcal Total: -70.24 4.03 -66.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997101850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.384 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds