Wall clock time and date at job start Tue Mar 31 2020 16:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.46899 * 2 1 4 4 C 1.38236 * 119.99685 * 90.00343 * 3 2 1 5 5 C 1.38243 * 119.99969 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99530 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.99465 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47079 * 90.00517 * 7 6 5 9 9 C 1.50701 * 109.46946 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62730 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 126.46248 * 12 11 9 14 14 C 1.53044 * 109.31440 * 54.56430 * 13 12 11 15 15 N 1.46498 * 109.46002 * 178.62636 * 14 13 12 16 16 C 1.36937 * 119.99990 * 204.99521 * 15 14 13 17 17 H 1.08000 * 119.99847 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00303 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00114 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46876 * 89.99560 * 20 18 16 22 22 H 1.48496 * 109.47311 * 209.99518 * 20 18 16 23 23 H 1.48490 * 109.47145 * 329.99886 * 20 18 16 24 24 C 1.53040 * 109.53662 * 298.63203 * 14 13 12 25 25 C 1.46957 * 120.65462 * 359.81587 * 11 9 8 26 26 C 1.38237 * 120.00633 * 0.25726 * 6 5 4 27 27 C 1.38230 * 119.99333 * 359.48917 * 26 6 5 28 28 H 1.08997 * 109.47101 * 299.99686 * 1 2 3 29 29 H 1.09002 * 109.47304 * 59.99887 * 1 2 3 30 30 H 1.09002 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46676 * 240.00127 * 2 1 3 32 32 H 1.08999 * 109.47018 * 120.00556 * 2 1 3 33 33 H 1.07995 * 120.00435 * 359.97438 * 4 3 2 34 34 H 1.07997 * 120.00291 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47157 * 329.99963 * 7 6 5 36 36 H 1.09002 * 109.46799 * 210.00036 * 7 6 5 37 37 H 1.09002 * 109.47153 * 59.99516 * 8 7 6 38 38 H 1.08999 * 109.46626 * 299.99893 * 8 7 6 39 39 H 1.09002 * 109.58861 * 6.60251 * 12 11 9 40 40 H 1.08996 * 109.58519 * 246.32142 * 12 11 9 41 41 H 1.09003 * 109.49294 * 174.51508 * 13 12 11 42 42 H 1.09001 * 109.49969 * 294.57596 * 13 12 11 43 43 H 1.08994 * 109.45986 * 58.65006 * 14 13 12 44 44 H 0.97003 * 120.00330 * 24.99965 * 15 14 13 45 45 H 0.96996 * 120.00692 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.49643 * 181.31582 * 24 14 13 47 47 H 1.08996 * 109.49892 * 301.41776 * 24 14 13 48 48 H 1.09001 * 109.46843 * 113.75468 * 25 11 9 49 49 H 1.08997 * 109.71602 * 353.46961 * 25 11 9 50 50 H 1.07992 * 120.00287 * 179.72961 * 26 6 5 51 51 H 1.08002 * 119.99951 * 180.25047 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0723 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9543 4.0272 0.0001 7 6 3.4566 5.4481 0.0002 8 6 4.9866 5.4481 0.0000 9 6 5.4888 6.8690 -0.0005 10 8 4.7007 7.7908 -0.0012 11 7 6.8139 7.1153 -0.0002 12 6 7.3189 8.4950 -0.0002 13 6 8.2980 8.6649 1.1657 14 6 9.3894 7.5963 1.0698 15 7 10.3459 7.7761 2.1648 16 6 11.6313 7.3227 2.0325 17 1 11.9399 6.8328 1.1208 18 6 12.5377 7.4935 3.0697 19 7 13.7733 7.0581 2.9424 20 14 12.0041 8.3414 4.6464 21 1 11.4822 7.3299 5.6002 22 1 13.1671 9.0387 5.2516 23 1 10.9387 9.3296 4.3409 24 6 8.7556 6.2069 1.1699 25 6 7.7816 6.0092 0.0047 26 6 2.7183 3.3776 -1.1971 27 6 2.2621 2.0728 -1.1971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0824 1.5634 2.1325 34 1 2.9036 3.8848 2.1325 35 1 3.0933 5.9618 0.8902 36 1 3.0931 5.9619 -0.8897 37 1 5.3498 4.9343 -0.8900 38 1 5.3500 4.9342 0.8899 39 1 6.4864 9.1888 0.1177 40 1 7.8319 8.6964 -0.9405 41 1 8.7524 9.6545 1.1178 42 1 7.7629 8.5555 2.1090 43 1 9.9076 7.6911 0.1157 44 1 10.0689 8.2164 2.9835 45 1 14.4066 7.1771 3.6674 46 1 9.5358 5.4471 1.1251 47 1 8.2163 6.1202 2.1131 48 1 8.3332 6.0050 -0.9355 49 1 7.2564 5.0617 0.1243 50 1 2.8941 3.8882 -2.1323 51 1 2.0815 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997285566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:16 Heat of formation + Delta-G solvation = -21.472854 kcal Electronic energy + Delta-G solvation = -27428.904250 eV Core-core repulsion = 23713.234440 eV Total energy + Delta-G solvation = -3715.669810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28464 -39.66118 -37.56114 -35.40362 -34.63837 -32.89255 -32.03010 -31.16832 -30.95495 -29.89546 -28.92830 -25.74123 -24.57656 -23.16837 -22.98291 -22.81495 -21.97646 -20.72188 -20.24986 -18.88118 -17.63403 -17.21318 -16.23037 -16.18425 -15.81135 -15.42141 -15.29164 -14.85164 -14.21040 -14.17566 -14.06599 -13.88572 -13.79360 -13.61742 -13.42980 -13.38226 -13.24821 -12.73401 -12.54478 -12.38805 -12.24500 -11.99619 -11.90164 -11.69847 -11.68392 -11.27194 -11.08220 -11.07635 -11.03007 -10.99259 -10.91478 -10.57908 -10.27791 -9.91754 -9.75334 -9.62797 -9.15895 -8.96665 -8.73995 -8.55856 -7.32315 -5.81298 -3.17269 1.06646 1.16641 2.64898 3.04087 3.34686 3.38141 3.42928 3.49787 4.32876 4.47525 4.48890 4.55430 4.73923 4.76320 4.83181 4.88768 4.96251 4.98150 5.06332 5.07772 5.16411 5.23161 5.25995 5.26682 5.32789 5.37997 5.46423 5.51793 5.57316 5.58447 5.61397 5.64271 5.73633 5.82986 5.83558 5.87673 5.91067 5.98421 6.07191 6.13934 6.18520 6.25971 6.35639 6.36153 6.42447 6.51610 6.76721 6.77647 6.90402 7.46622 7.94133 8.19719 8.37755 9.15922 9.88810 10.08546 11.36826 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.002097 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.242396 B =13348.588306 C =14257.950755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.064 4.064 8 C -0.133 4.133 9 C 0.514 3.486 10 O -0.551 6.551 11 N -0.608 5.608 12 C 0.116 3.884 13 C -0.142 4.142 14 C 0.183 3.817 15 N -0.748 5.748 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.152 4.152 25 C 0.107 3.893 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.752 -10.931 -8.375 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.102 4.102 8 C -0.173 4.173 9 C 0.302 3.698 10 O -0.430 6.430 11 N -0.341 5.341 12 C -0.007 4.007 13 C -0.181 4.181 14 C 0.074 3.926 15 N -0.390 5.390 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.193 4.193 25 C -0.017 4.017 26 C -0.131 4.131 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.910 -10.527 -8.459 29.218 hybrid contribution -0.004 0.462 1.297 1.377 sum -25.913 -10.065 -7.162 28.707 Atomic orbital electron populations 1.21750 0.94772 1.01656 1.02220 1.20544 0.96144 0.92762 1.02840 1.19891 0.99451 0.96240 0.93268 1.21019 0.99969 0.94889 0.97509 1.21084 0.99416 0.94791 0.97743 1.19914 0.99255 0.96072 0.93211 1.20335 0.93346 0.92104 1.04408 1.21673 0.96612 0.94387 1.04652 1.20641 0.81857 0.91492 0.75761 1.90667 1.54912 1.46601 1.50816 1.48218 1.05481 1.07860 1.72513 1.21575 0.97770 0.82694 0.98662 1.22241 0.96970 1.00769 0.98134 1.20141 0.88747 0.90967 0.92789 1.42799 1.09315 1.71340 1.15565 1.19062 0.85085 1.31328 1.01984 0.89168 1.24674 0.95560 1.00820 0.98022 1.69695 1.03648 1.51649 1.33062 0.86559 0.77518 0.79703 0.84788 1.21129 1.21737 1.20340 1.22628 0.98075 1.01781 0.96768 1.21869 0.90925 0.88776 1.00101 1.21055 0.99630 0.94768 0.97652 1.21001 1.00128 0.94868 0.97463 0.92564 0.92588 0.92438 0.91087 0.91063 0.86224 0.85995 0.90238 0.90260 0.88839 0.88695 0.89352 0.91467 0.90520 0.92004 0.92524 0.80650 0.93036 0.90092 0.92297 0.91262 0.90244 0.86053 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.09 -0.52 6.06 -27.88 -0.17 -0.69 16 3 C -0.09 -0.71 5.13 -104.63 -0.54 -1.25 16 4 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 5 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 6 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16 7 C -0.06 -0.63 4.64 -27.88 -0.13 -0.76 16 8 C -0.13 -1.32 4.03 -27.88 -0.11 -1.43 16 9 C 0.51 6.81 7.70 -10.98 -0.08 6.72 16 10 O -0.55 -9.02 15.39 5.56 0.09 -8.94 16 11 N -0.61 -7.95 2.98 -172.77 -0.51 -8.46 16 12 C 0.12 1.57 6.43 -3.71 -0.02 1.55 16 13 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 14 C 0.18 3.29 2.73 -67.89 -0.19 3.10 16 15 N -0.75 -17.04 4.92 -53.39 -0.26 -17.30 16 16 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 20 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 24 C -0.15 -2.36 5.66 -26.63 -0.15 -2.51 16 25 C 0.11 1.28 6.33 -3.71 -0.02 1.26 16 26 C -0.11 -0.97 9.70 -39.58 -0.38 -1.36 16 27 C -0.12 -0.94 9.70 -39.59 -0.38 -1.33 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 36 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 37 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 38 H 0.09 0.88 7.69 -51.93 -0.40 0.48 16 39 H 0.09 1.25 7.01 -51.93 -0.36 0.88 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 44 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -32.43 406.21 -10.93 -43.36 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.90 Total: 6.41 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.52 Total: -10.31 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.00 Total: -53.79 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.43 -10.93 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997285566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.884 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds