Wall clock time and date at job start Tue Mar 31 2020 16:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.46899 * 2 1 4 4 C 1.38236 * 119.99685 * 90.00343 * 3 2 1 5 5 C 1.38243 * 119.99969 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99530 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.99465 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47079 * 90.00517 * 7 6 5 9 9 C 1.50701 * 109.46946 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00166 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62730 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 126.46248 * 12 11 9 14 14 C 1.53044 * 109.31440 * 54.56430 * 13 12 11 15 15 N 1.46498 * 109.46002 * 178.62636 * 14 13 12 16 16 C 1.36937 * 119.99990 * 204.99521 * 15 14 13 17 17 H 1.08000 * 119.99847 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00303 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00114 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46876 * 89.99560 * 20 18 16 22 22 H 1.48496 * 109.47311 * 209.99518 * 20 18 16 23 23 H 1.48490 * 109.47145 * 329.99886 * 20 18 16 24 24 C 1.53040 * 109.53662 * 298.63203 * 14 13 12 25 25 C 1.46957 * 120.65462 * 359.81587 * 11 9 8 26 26 C 1.38237 * 120.00633 * 0.25726 * 6 5 4 27 27 C 1.38230 * 119.99333 * 359.48917 * 26 6 5 28 28 H 1.08997 * 109.47101 * 299.99686 * 1 2 3 29 29 H 1.09002 * 109.47304 * 59.99887 * 1 2 3 30 30 H 1.09002 * 109.46669 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46676 * 240.00127 * 2 1 3 32 32 H 1.08999 * 109.47018 * 120.00556 * 2 1 3 33 33 H 1.07995 * 120.00435 * 359.97438 * 4 3 2 34 34 H 1.07997 * 120.00291 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47157 * 329.99963 * 7 6 5 36 36 H 1.09002 * 109.46799 * 210.00036 * 7 6 5 37 37 H 1.09002 * 109.47153 * 59.99516 * 8 7 6 38 38 H 1.08999 * 109.46626 * 299.99893 * 8 7 6 39 39 H 1.09002 * 109.58861 * 6.60251 * 12 11 9 40 40 H 1.08996 * 109.58519 * 246.32142 * 12 11 9 41 41 H 1.09003 * 109.49294 * 174.51508 * 13 12 11 42 42 H 1.09001 * 109.49969 * 294.57596 * 13 12 11 43 43 H 1.08994 * 109.45986 * 58.65006 * 14 13 12 44 44 H 0.97003 * 120.00330 * 24.99965 * 15 14 13 45 45 H 0.96996 * 120.00692 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.49643 * 181.31582 * 24 14 13 47 47 H 1.08996 * 109.49892 * 301.41776 * 24 14 13 48 48 H 1.09001 * 109.46843 * 113.75468 * 25 11 9 49 49 H 1.08997 * 109.71602 * 353.46961 * 25 11 9 50 50 H 1.07992 * 120.00287 * 179.72961 * 26 6 5 51 51 H 1.08002 * 119.99951 * 180.25047 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0723 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9543 4.0272 0.0001 7 6 3.4566 5.4481 0.0002 8 6 4.9866 5.4481 0.0000 9 6 5.4888 6.8690 -0.0005 10 8 4.7007 7.7908 -0.0012 11 7 6.8139 7.1153 -0.0002 12 6 7.3189 8.4950 -0.0002 13 6 8.2980 8.6649 1.1657 14 6 9.3894 7.5963 1.0698 15 7 10.3459 7.7761 2.1648 16 6 11.6313 7.3227 2.0325 17 1 11.9399 6.8328 1.1208 18 6 12.5377 7.4935 3.0697 19 7 13.7733 7.0581 2.9424 20 14 12.0041 8.3414 4.6464 21 1 11.4822 7.3299 5.6002 22 1 13.1671 9.0387 5.2516 23 1 10.9387 9.3296 4.3409 24 6 8.7556 6.2069 1.1699 25 6 7.7816 6.0092 0.0047 26 6 2.7183 3.3776 -1.1971 27 6 2.2621 2.0728 -1.1971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0824 1.5634 2.1325 34 1 2.9036 3.8848 2.1325 35 1 3.0933 5.9618 0.8902 36 1 3.0931 5.9619 -0.8897 37 1 5.3498 4.9343 -0.8900 38 1 5.3500 4.9342 0.8899 39 1 6.4864 9.1888 0.1177 40 1 7.8319 8.6964 -0.9405 41 1 8.7524 9.6545 1.1178 42 1 7.7629 8.5555 2.1090 43 1 9.9076 7.6911 0.1157 44 1 10.0689 8.2164 2.9835 45 1 14.4066 7.1771 3.6674 46 1 9.5358 5.4471 1.1251 47 1 8.2163 6.1202 2.1131 48 1 8.3332 6.0050 -0.9355 49 1 7.2564 5.0617 0.1243 50 1 2.8941 3.8882 -2.1323 51 1 2.0815 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997285566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:15 Heat of formation + Delta-G solvation = -38.300825 kcal Electronic energy + Delta-G solvation = -27429.633966 eV Core-core repulsion = 23713.234440 eV Total energy + Delta-G solvation = -3716.399525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29943 -40.35129 -38.83943 -36.26050 -36.02726 -34.01384 -33.45309 -32.09114 -31.77321 -31.50719 -29.67691 -26.88176 -25.72394 -24.30375 -23.97850 -23.59094 -23.11101 -21.72121 -21.22960 -20.14263 -19.37884 -18.30259 -16.98012 -16.93199 -16.80191 -16.68553 -16.25905 -15.96674 -15.81402 -15.12851 -15.04579 -14.91247 -14.73075 -14.55817 -14.42825 -14.31066 -14.13653 -14.02973 -13.69332 -13.50040 -13.26820 -13.14000 -12.95293 -12.66536 -12.64715 -12.35766 -12.29536 -12.16254 -12.06473 -12.01772 -11.86639 -11.78810 -11.63495 -11.59645 -11.33758 -11.00333 -10.76718 -9.77974 -9.67321 -9.37090 -9.30545 -8.01430 -5.34313 0.43698 0.54563 1.37989 1.39653 1.47170 1.62474 2.03104 2.48406 2.86308 3.29979 3.45514 3.55279 3.85718 3.90672 3.92712 4.03078 4.10204 4.13546 4.14963 4.19713 4.25065 4.34931 4.37731 4.40542 4.53381 4.59150 4.62487 4.64779 4.67098 4.73157 4.78428 4.82642 4.84498 4.96108 5.00891 5.06527 5.08569 5.10689 5.11911 5.24993 5.27535 5.28429 5.39868 5.47147 5.57180 5.61884 5.77021 5.78048 5.78779 6.16855 6.22743 6.43244 7.08614 7.16360 7.85465 8.03500 9.19822 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.002097 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.242396 B =13348.588306 C =14257.950755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.094 4.094 7 C -0.056 4.056 8 C -0.126 4.126 9 C 0.512 3.488 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.120 3.880 13 C -0.131 4.131 14 C 0.175 3.825 15 N -0.753 5.753 16 C -0.224 4.224 17 H 0.062 0.938 18 C -0.064 4.064 19 N -0.983 5.983 20 Si 0.951 3.049 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.255 1.255 24 C -0.143 4.143 25 C 0.115 3.885 26 C -0.120 4.120 27 C -0.124 4.124 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.363 0.637 45 H 0.256 0.744 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.132 0.868 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.873 -11.735 -8.719 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.094 4.094 8 C -0.165 4.165 9 C 0.303 3.697 10 O -0.466 6.466 11 N -0.341 5.341 12 C -0.003 4.003 13 C -0.170 4.170 14 C 0.067 3.933 15 N -0.396 5.396 16 C -0.355 4.355 17 H 0.080 0.920 18 C -0.256 4.256 19 N -0.634 5.634 20 Si 0.779 3.221 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.180 1.180 24 C -0.184 4.184 25 C -0.008 4.008 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.128 0.872 50 H 0.150 0.850 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -28.089 -11.336 -8.831 31.552 hybrid contribution 0.608 0.671 1.303 1.587 sum -27.481 -10.665 -7.528 30.425 Atomic orbital electron populations 1.21735 0.94369 1.02304 1.01813 1.20583 0.96424 0.91720 1.03504 1.20175 0.98902 0.97143 0.93171 1.21236 0.99962 0.94865 0.98330 1.21235 0.99748 0.95236 0.97966 1.19884 1.00125 0.95724 0.93655 1.20213 0.93333 0.92404 1.03478 1.21690 0.96563 0.92192 1.06101 1.21201 0.81411 0.92480 0.74643 1.90657 1.55665 1.47982 1.52323 1.48289 1.05780 1.07786 1.72282 1.21495 0.97170 0.83286 0.98366 1.22102 0.96271 0.99743 0.98850 1.20411 0.88688 0.93367 0.90846 1.42850 1.08552 1.71217 1.16939 1.19031 0.86789 1.29211 1.00442 0.92026 1.25442 0.95666 1.02678 1.01766 1.69868 1.05115 1.54205 1.34196 0.85471 0.77293 0.78960 0.80401 1.20726 1.22528 1.17957 1.22429 0.98274 0.99299 0.98391 1.21872 0.90311 0.89691 0.98909 1.21246 0.99519 0.95120 0.97902 1.21254 0.99816 0.94847 0.98256 0.93086 0.92878 0.91283 0.90285 0.90563 0.85091 0.85598 0.91509 0.90898 0.86736 0.87578 0.89696 0.90131 0.90456 0.92379 0.93281 0.80460 0.93478 0.91778 0.92639 0.89961 0.87242 0.84962 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 71.98 0.71 -0.64 16 2 C -0.09 -0.88 6.06 29.85 0.18 -0.69 16 3 C -0.09 -1.35 5.13 -19.87 -0.10 -1.45 16 4 C -0.13 -1.93 9.70 22.27 0.22 -1.72 16 5 C -0.12 -2.07 9.70 22.27 0.22 -1.85 16 6 C -0.09 -1.59 5.13 -19.86 -0.10 -1.69 16 7 C -0.06 -1.03 4.64 29.85 0.14 -0.89 16 8 C -0.13 -2.17 4.03 29.85 0.12 -2.05 16 9 C 0.51 12.52 7.70 87.66 0.67 13.19 16 10 O -0.59 -18.47 15.39 -3.02 -0.05 -18.52 16 11 N -0.61 -14.47 2.98 -818.91 -2.44 -16.91 16 12 C 0.12 3.03 6.43 86.36 0.56 3.58 16 13 C -0.13 -3.80 5.55 30.67 0.17 -3.63 16 14 C 0.17 6.08 2.73 45.02 0.12 6.21 16 15 N -0.75 -33.72 4.92 -322.82 -1.59 -35.31 16 16 C -0.22 -12.31 10.41 84.03 0.87 -11.43 16 17 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 18 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 19 N -0.98 -62.17 13.97 21.65 0.30 -61.87 16 20 Si 0.95 45.23 27.74 68.60 1.90 47.13 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.25 -11.02 6.52 99.48 0.65 -10.37 16 24 C -0.14 -4.24 5.66 30.66 0.17 -4.07 16 25 C 0.11 2.44 6.33 86.34 0.55 2.99 16 26 C -0.12 -1.85 9.70 22.27 0.22 -1.63 16 27 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 32 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 33 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 36 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 37 H 0.11 1.53 7.95 -2.39 -0.02 1.51 16 38 H 0.11 1.64 7.69 -2.39 -0.02 1.62 16 39 H 0.08 2.26 7.01 -2.39 -0.02 2.25 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 44 H 0.36 15.93 5.66 -92.71 -0.52 15.40 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.11 1.73 5.95 -2.39 -0.01 1.71 16 50 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 51 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -70.59 406.21 3.83 -66.75 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.31 Total: 29.31 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 5.40 Total: -10.58 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.73 Total: -114.09 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -70.59 3.83 -66.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997285566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.454 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds