Wall clock time and date at job start Tue Mar 31 2020 16:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47362 * 2 1 4 4 C 1.38381 * 119.85972 * 265.23957 * 3 2 1 5 5 C 1.37931 * 120.14950 * 180.27654 * 4 3 2 6 6 C 1.39597 * 119.84931 * 359.74379 * 5 4 3 7 7 C 1.47847 * 120.14270 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99933 * 217.94709 * 7 6 5 9 9 N 1.34775 * 120.00197 * 37.94769 * 7 6 5 10 10 C 1.46923 * 120.62942 * 5.47169 * 9 7 6 11 11 C 1.53618 * 108.54621 * 126.37187 * 10 9 7 12 12 C 1.53042 * 109.24369 * 54.85636 * 11 10 9 13 13 N 1.46495 * 109.46212 * 178.49664 * 12 11 10 14 14 C 1.36940 * 119.99699 * 275.06664 * 13 12 11 15 15 H 1.08001 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99907 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99978 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99836 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46824 * 90.00144 * 18 16 14 20 20 H 1.48492 * 109.47123 * 209.99758 * 18 16 14 21 21 H 1.48493 * 109.47092 * 330.00089 * 18 16 14 22 22 C 1.53043 * 109.53524 * 298.51374 * 12 11 10 23 23 C 1.46932 * 120.63160 * 185.75563 * 9 7 6 24 24 C 1.39557 * 119.71565 * 0.02562 * 6 5 4 25 25 C 1.37973 * 119.84904 * 359.97438 * 24 6 5 26 26 C 1.50704 * 119.92966 * 179.97438 * 25 24 6 27 27 C 1.53001 * 109.46809 * 265.00434 * 26 25 24 28 28 H 1.09001 * 109.47243 * 299.99305 * 1 2 3 29 29 H 1.08994 * 109.47268 * 59.99733 * 1 2 3 30 30 H 1.09005 * 109.47377 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46697 * 240.00193 * 2 1 3 32 32 H 1.09003 * 109.47374 * 120.00850 * 2 1 3 33 33 H 1.08001 * 119.92675 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.07601 * 179.76526 * 5 4 3 35 35 H 1.09009 * 109.58582 * 246.20346 * 10 9 7 36 36 H 1.09000 * 109.58744 * 6.62557 * 10 9 7 37 37 H 1.08996 * 109.63454 * 294.86448 * 11 10 9 38 38 H 1.09004 * 109.43449 * 174.72364 * 11 10 9 39 39 H 1.08997 * 109.45332 * 58.52265 * 12 11 10 40 40 H 0.97000 * 120.00341 * 95.06668 * 13 12 11 41 41 H 0.97006 * 120.00298 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.49859 * 301.41270 * 22 12 11 43 43 H 1.09006 * 109.49901 * 181.31701 * 22 12 11 44 44 H 1.08992 * 109.58644 * 353.36747 * 23 9 7 45 45 H 1.09002 * 109.58827 * 113.65384 * 23 9 7 46 46 H 1.07999 * 120.07313 * 179.97438 * 24 6 5 47 47 H 1.08987 * 109.47486 * 145.00228 * 26 25 24 48 48 H 1.09000 * 109.46810 * 24.99311 * 26 25 24 49 49 H 1.09003 * 109.47180 * 299.99385 * 27 26 25 50 50 H 1.08997 * 109.47790 * 59.99580 * 27 26 25 51 51 H 1.08997 * 109.46852 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3559 2.0371 -1.1960 5 6 2.8217 3.3353 -1.2024 6 6 2.9613 4.0294 0.0007 7 6 3.4605 5.4211 0.0013 8 8 4.2061 5.7989 0.8839 9 7 3.0889 6.2708 -0.9766 10 6 2.0964 5.8670 -1.9819 11 6 0.9755 6.9170 -2.0110 12 6 1.5857 8.2998 -2.2509 13 7 0.5175 9.3003 -2.3153 14 6 -0.1373 9.5275 -3.4964 15 1 0.1340 8.9696 -4.3804 16 6 -1.1492 10.4759 -3.5576 17 7 -1.4795 11.1562 -2.4804 18 14 -2.0419 10.7864 -5.1688 19 1 -3.2193 9.8863 -5.2638 20 1 -2.4942 12.1999 -5.2197 21 1 -1.1222 10.5198 -6.3037 22 6 2.5386 8.6446 -1.1040 23 6 3.6732 7.6162 -1.0614 24 6 2.6287 3.4037 1.2029 25 6 2.1639 2.1046 1.1953 26 6 1.8047 1.4270 2.4926 27 6 2.9996 0.6107 2.9895 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 2.2474 1.4990 -2.1261 34 1 3.0775 3.8139 -2.1362 35 1 2.5714 5.8084 -2.9614 36 1 1.6816 4.8948 -1.7160 37 1 0.4455 6.9135 -1.0586 38 1 0.2792 6.6820 -2.8162 39 1 2.1364 8.2954 -3.1915 40 1 0.2740 9.8017 -1.5215 41 1 -2.1869 11.8187 -2.5231 42 1 1.9940 8.6248 -0.1601 43 1 2.9550 9.6393 -1.2635 44 1 4.2990 7.7985 -0.1878 45 1 4.2762 7.6965 -1.9659 46 1 2.7348 3.9351 2.1371 47 1 0.9536 0.7651 2.3333 48 1 1.5450 2.1804 3.2363 49 1 3.2594 -0.1427 2.2458 50 1 3.8508 1.2726 3.1488 51 1 2.7400 0.1210 3.9280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997458999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:19 Heat of formation + Delta-G solvation = -13.602214 kcal Electronic energy + Delta-G solvation = -28493.363430 eV Core-core repulsion = 24778.034916 eV Total energy + Delta-G solvation = -3715.328513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71401 -39.29556 -37.30765 -35.12246 -34.38754 -33.70324 -32.06404 -30.96498 -30.17766 -29.49772 -28.91794 -25.52568 -24.57566 -24.02443 -23.02666 -22.55514 -21.81035 -21.23733 -20.09965 -19.01280 -17.22485 -16.98563 -16.53086 -16.08920 -15.74307 -15.02022 -14.84188 -14.71382 -14.14449 -14.06894 -13.92928 -13.82763 -13.69639 -13.51018 -13.45560 -13.39556 -12.96197 -12.78223 -12.71992 -12.34936 -12.13835 -11.91563 -11.73724 -11.59934 -11.46991 -11.39736 -11.05663 -10.95888 -10.88120 -10.87136 -10.76834 -10.47820 -10.24712 -9.84203 -9.77309 -9.66981 -9.02636 -8.93532 -8.72297 -8.46445 -6.98901 -5.78876 -3.08117 0.79743 1.17700 2.74891 3.06894 3.41155 3.46236 3.48212 3.60830 4.36990 4.43998 4.53134 4.56414 4.64123 4.73055 4.91545 5.00173 5.01919 5.11356 5.13635 5.21432 5.28054 5.31747 5.34008 5.35108 5.41907 5.49578 5.52625 5.56633 5.61434 5.65113 5.69018 5.71449 5.76566 5.86543 5.88606 5.94102 6.01023 6.03004 6.15845 6.20541 6.22871 6.37922 6.39116 6.41832 6.51117 6.63072 6.73112 6.89183 7.03793 7.50308 7.66715 8.21670 8.39327 9.50485 10.08250 10.42949 11.43709 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.002669 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.881311 B =10489.939118 C =11499.289145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.060 4.060 4 C -0.123 4.123 5 C -0.090 4.090 6 C -0.125 4.125 7 C 0.558 3.442 8 O -0.546 6.546 9 N -0.599 5.599 10 C 0.095 3.905 11 C -0.150 4.150 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.139 4.139 23 C 0.116 3.884 24 C -0.061 4.061 25 C -0.088 4.088 26 C -0.088 4.088 27 C -0.148 4.148 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.129 0.871 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -23.835 6.195 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.061 4.061 4 C -0.141 4.141 5 C -0.108 4.108 6 C -0.128 4.128 7 C 0.347 3.653 8 O -0.424 6.424 9 N -0.331 5.331 10 C -0.028 4.028 11 C -0.191 4.191 12 C 0.069 3.931 13 N -0.364 5.364 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.178 4.178 23 C -0.006 4.006 24 C -0.080 4.080 25 C -0.088 4.088 26 C -0.125 4.125 27 C -0.205 4.205 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.147 0.853 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.907 -23.563 6.465 26.007 hybrid contribution -0.777 0.520 -0.786 1.221 sum 8.130 -23.043 5.679 25.087 Atomic orbital electron populations 1.21771 0.94451 1.01805 1.02585 1.20650 0.96431 0.92575 1.03092 1.19905 0.97507 0.96088 0.92572 1.20957 1.00701 0.94777 0.97703 1.21440 0.97584 0.94549 0.97272 1.19870 1.04062 0.94441 0.94473 1.18365 0.80692 0.85052 0.81196 1.90750 1.37533 1.77884 1.36276 1.48060 1.41811 1.14615 1.28614 1.22372 0.89851 0.99615 0.90919 1.22753 0.97015 0.96785 1.02555 1.20170 0.89292 0.88303 0.95365 1.42439 1.39651 1.43408 1.10948 1.19228 1.12372 1.16682 0.88780 0.91183 1.24754 0.99697 0.99280 0.97225 1.69662 1.33210 1.27895 1.27274 0.86206 0.79787 0.77196 0.83100 1.21743 1.21784 1.20762 1.22202 0.96759 0.98377 1.00417 1.21647 0.95917 0.80481 1.02594 1.21046 0.95815 0.93847 0.97261 1.19656 1.00353 0.93840 0.94931 1.20599 0.98796 0.99380 0.93723 1.21774 0.98019 0.99970 1.00780 0.92304 0.92287 0.92321 0.90969 0.90497 0.85490 0.84928 0.91410 0.89320 0.92188 0.90668 0.93430 0.78260 0.93487 0.91802 0.90505 0.89299 0.91438 0.85272 0.90499 0.90886 0.92486 0.92365 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.72 37.16 0.36 -0.60 16 2 C -0.09 -0.61 5.37 -27.89 -0.15 -0.76 16 3 C -0.06 -0.55 5.14 -104.53 -0.54 -1.09 16 4 C -0.12 -1.15 9.66 -39.64 -0.38 -1.53 16 5 C -0.09 -0.97 7.36 -39.19 -0.29 -1.26 16 6 C -0.13 -1.64 5.21 -104.97 -0.55 -2.19 16 7 C 0.56 8.70 7.35 -12.33 -0.09 8.61 16 8 O -0.55 -10.11 16.31 5.31 0.09 -10.02 16 9 N -0.60 -8.77 2.97 -173.61 -0.51 -9.29 16 10 C 0.10 1.28 4.86 -3.49 -0.02 1.26 16 11 C -0.15 -2.56 5.67 -26.39 -0.15 -2.71 16 12 C 0.18 3.43 2.73 -67.89 -0.19 3.25 16 13 N -0.72 -17.83 5.12 -53.38 -0.27 -18.10 16 14 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 23 C 0.12 1.71 6.44 -3.71 -0.02 1.68 16 24 C -0.06 -0.74 9.25 -39.19 -0.36 -1.10 16 25 C -0.09 -0.88 5.13 -104.68 -0.54 -1.41 16 26 C -0.09 -0.68 5.38 -27.88 -0.15 -0.83 16 27 C -0.15 -1.02 9.71 37.16 0.36 -0.66 16 28 H 0.06 0.40 6.79 -51.93 -0.35 0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.08 0.46 5.57 -51.93 -0.29 0.18 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.28 6.31 -52.49 -0.33 0.95 16 35 H 0.07 0.81 8.09 -51.92 -0.42 0.39 16 36 H 0.09 1.08 4.58 -51.93 -0.24 0.84 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.13 1.60 8.04 -52.49 -0.42 1.17 16 47 H 0.08 0.52 5.61 -51.94 -0.29 0.23 16 48 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 49 H 0.06 0.37 6.76 -51.93 -0.35 0.02 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -31.99 396.49 -10.52 -42.52 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.41 Total: 8.10 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.09 Total: -8.96 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.06 Total: -54.71 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.99 -10.52 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997458999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.915 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds