Wall clock time and date at job start Tue Mar 31 2020 16:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47362 * 2 1 4 4 C 1.38381 * 119.85972 * 265.23957 * 3 2 1 5 5 C 1.37931 * 120.14950 * 180.27654 * 4 3 2 6 6 C 1.39597 * 119.84931 * 359.74379 * 5 4 3 7 7 C 1.47847 * 120.14270 * 179.97438 * 6 5 4 8 8 O 1.21560 * 119.99933 * 217.94709 * 7 6 5 9 9 N 1.34775 * 120.00197 * 37.94769 * 7 6 5 10 10 C 1.46923 * 120.62942 * 5.47169 * 9 7 6 11 11 C 1.53618 * 108.54621 * 126.37187 * 10 9 7 12 12 C 1.53042 * 109.24369 * 54.85636 * 11 10 9 13 13 N 1.46495 * 109.46212 * 178.49664 * 12 11 10 14 14 C 1.36940 * 119.99699 * 275.06664 * 13 12 11 15 15 H 1.08001 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99907 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99978 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99836 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46824 * 90.00144 * 18 16 14 20 20 H 1.48492 * 109.47123 * 209.99758 * 18 16 14 21 21 H 1.48493 * 109.47092 * 330.00089 * 18 16 14 22 22 C 1.53043 * 109.53524 * 298.51374 * 12 11 10 23 23 C 1.46932 * 120.63160 * 185.75563 * 9 7 6 24 24 C 1.39557 * 119.71565 * 0.02562 * 6 5 4 25 25 C 1.37973 * 119.84904 * 359.97438 * 24 6 5 26 26 C 1.50704 * 119.92966 * 179.97438 * 25 24 6 27 27 C 1.53001 * 109.46809 * 265.00434 * 26 25 24 28 28 H 1.09001 * 109.47243 * 299.99305 * 1 2 3 29 29 H 1.08994 * 109.47268 * 59.99733 * 1 2 3 30 30 H 1.09005 * 109.47377 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46697 * 240.00193 * 2 1 3 32 32 H 1.09003 * 109.47374 * 120.00850 * 2 1 3 33 33 H 1.08001 * 119.92675 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.07601 * 179.76526 * 5 4 3 35 35 H 1.09009 * 109.58582 * 246.20346 * 10 9 7 36 36 H 1.09000 * 109.58744 * 6.62557 * 10 9 7 37 37 H 1.08996 * 109.63454 * 294.86448 * 11 10 9 38 38 H 1.09004 * 109.43449 * 174.72364 * 11 10 9 39 39 H 1.08997 * 109.45332 * 58.52265 * 12 11 10 40 40 H 0.97000 * 120.00341 * 95.06668 * 13 12 11 41 41 H 0.97006 * 120.00298 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.49859 * 301.41270 * 22 12 11 43 43 H 1.09006 * 109.49901 * 181.31701 * 22 12 11 44 44 H 1.08992 * 109.58644 * 353.36747 * 23 9 7 45 45 H 1.09002 * 109.58827 * 113.65384 * 23 9 7 46 46 H 1.07999 * 120.07313 * 179.97438 * 24 6 5 47 47 H 1.08987 * 109.47486 * 145.00228 * 26 25 24 48 48 H 1.09000 * 109.46810 * 24.99311 * 26 25 24 49 49 H 1.09003 * 109.47180 * 299.99385 * 27 26 25 50 50 H 1.08997 * 109.47790 * 59.99580 * 27 26 25 51 51 H 1.08997 * 109.46852 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3559 2.0371 -1.1960 5 6 2.8217 3.3353 -1.2024 6 6 2.9613 4.0294 0.0007 7 6 3.4605 5.4211 0.0013 8 8 4.2061 5.7989 0.8839 9 7 3.0889 6.2708 -0.9766 10 6 2.0964 5.8670 -1.9819 11 6 0.9755 6.9170 -2.0110 12 6 1.5857 8.2998 -2.2509 13 7 0.5175 9.3003 -2.3153 14 6 -0.1373 9.5275 -3.4964 15 1 0.1340 8.9696 -4.3804 16 6 -1.1492 10.4759 -3.5576 17 7 -1.4795 11.1562 -2.4804 18 14 -2.0419 10.7864 -5.1688 19 1 -3.2193 9.8863 -5.2638 20 1 -2.4942 12.1999 -5.2197 21 1 -1.1222 10.5198 -6.3037 22 6 2.5386 8.6446 -1.1040 23 6 3.6732 7.6162 -1.0614 24 6 2.6287 3.4037 1.2029 25 6 2.1639 2.1046 1.1953 26 6 1.8047 1.4270 2.4926 27 6 2.9996 0.6107 2.9895 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 2.2474 1.4990 -2.1261 34 1 3.0775 3.8139 -2.1362 35 1 2.5714 5.8084 -2.9614 36 1 1.6816 4.8948 -1.7160 37 1 0.4455 6.9135 -1.0586 38 1 0.2792 6.6820 -2.8162 39 1 2.1364 8.2954 -3.1915 40 1 0.2740 9.8017 -1.5215 41 1 -2.1869 11.8187 -2.5231 42 1 1.9940 8.6248 -0.1601 43 1 2.9550 9.6393 -1.2635 44 1 4.2990 7.7985 -0.1878 45 1 4.2762 7.6965 -1.9659 46 1 2.7348 3.9351 2.1371 47 1 0.9536 0.7651 2.3333 48 1 1.5450 2.1804 3.2363 49 1 3.2594 -0.1427 2.2458 50 1 3.8508 1.2726 3.1488 51 1 2.7400 0.1210 3.9280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997458999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:18 Heat of formation + Delta-G solvation = -30.710241 kcal Electronic energy + Delta-G solvation = -28494.105289 eV Core-core repulsion = 24778.034916 eV Total energy + Delta-G solvation = -3716.070373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75021 -40.26131 -38.71005 -36.29824 -35.67718 -34.33834 -33.80835 -32.23452 -31.15508 -30.81709 -29.93486 -26.87089 -25.64435 -24.96714 -24.46593 -23.76508 -22.50122 -22.31695 -21.30820 -20.22590 -19.09297 -18.19108 -17.50521 -17.00367 -16.68514 -16.61342 -16.16371 -15.62584 -15.48652 -15.38581 -15.01345 -14.82379 -14.76193 -14.61883 -14.48722 -14.27571 -14.11195 -13.96478 -13.40396 -13.39617 -13.26318 -13.05025 -12.86571 -12.76927 -12.62797 -12.46546 -12.20690 -12.15204 -12.12187 -12.04950 -12.02194 -11.70988 -11.68486 -11.44462 -11.33988 -11.02063 -10.82294 -9.88715 -9.71869 -9.49905 -9.00725 -7.93165 -5.22301 -0.07499 0.37823 1.48213 1.49698 1.58030 1.63324 1.94677 2.56781 2.73544 3.37722 3.41445 3.73019 3.79227 3.84635 3.87448 3.92873 4.05400 4.12929 4.14730 4.21032 4.32302 4.36146 4.43400 4.47864 4.54563 4.55206 4.58811 4.60077 4.74598 4.77494 4.79525 4.83662 4.86192 4.98699 5.01439 5.03859 5.06364 5.10054 5.12177 5.21772 5.27747 5.34567 5.35350 5.44957 5.48313 5.50663 5.53351 5.58912 5.67954 5.96576 6.27922 6.32131 7.02225 7.33987 8.09353 8.32653 9.30693 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.002669 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.881311 B =10489.939118 C =11499.289145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.057 4.057 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.149 4.149 7 C 0.555 3.445 8 O -0.585 6.585 9 N -0.599 5.599 10 C 0.105 3.895 11 C -0.140 4.140 12 C 0.174 3.826 13 N -0.739 5.739 14 C -0.234 4.234 15 H 0.081 0.919 16 C -0.080 4.080 17 N -0.974 5.974 18 Si 0.972 3.028 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.266 1.266 22 C -0.128 4.128 23 C 0.122 3.878 24 C -0.080 4.080 25 C -0.090 4.090 26 C -0.088 4.088 27 C -0.145 4.145 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.369 0.631 41 H 0.249 0.751 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -27.042 4.317 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.058 4.058 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.152 4.152 7 C 0.346 3.654 8 O -0.467 6.467 9 N -0.330 5.330 10 C -0.017 4.017 11 C -0.181 4.181 12 C 0.066 3.934 13 N -0.378 5.378 14 C -0.365 4.365 15 H 0.099 0.901 16 C -0.272 4.272 17 N -0.625 5.625 18 Si 0.801 3.199 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.191 1.191 22 C -0.167 4.167 23 C -0.001 4.001 24 C -0.099 4.099 25 C -0.090 4.090 26 C -0.125 4.125 27 C -0.202 4.202 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.200 0.800 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.062 0.938 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.246 -26.821 4.557 28.734 hybrid contribution -0.837 1.428 -0.146 1.662 sum 8.409 -25.394 4.412 27.111 Atomic orbital electron populations 1.21769 0.94163 1.02646 1.01994 1.20719 0.96504 0.90916 1.04395 1.20281 0.96142 0.97257 0.92084 1.21320 0.99367 0.94200 0.98970 1.21594 0.97462 0.95208 0.96734 1.19787 1.06189 0.93366 0.95858 1.18824 0.80026 0.86131 0.80428 1.90718 1.39386 1.78873 1.37682 1.48125 1.41780 1.14404 1.28723 1.22410 0.88488 0.98826 0.91944 1.22542 0.97932 0.96557 1.01066 1.20416 0.88405 0.88122 0.96459 1.42683 1.40763 1.44574 1.09766 1.19649 1.11578 1.15582 0.89739 0.90081 1.25583 1.01281 0.99917 1.00411 1.69833 1.34137 1.29024 1.29474 0.85152 0.78661 0.76304 0.79746 1.21511 1.22671 1.19071 1.22060 0.96845 0.99233 0.98545 1.21587 0.94972 0.79993 1.03532 1.21079 0.97211 0.95017 0.96607 1.19890 0.99636 0.93022 0.96461 1.20656 0.99691 0.99501 0.92655 1.21755 0.97030 0.99716 1.01741 0.92962 0.92854 0.90800 0.89375 0.89571 0.82617 0.83544 0.88566 0.87577 0.94349 0.91272 0.92708 0.79972 0.94205 0.93664 0.90636 0.89923 0.88965 0.86824 0.88995 0.91407 0.91726 0.93798 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.72 71.98 0.70 -0.77 16 2 C -0.09 -0.88 5.37 29.84 0.16 -0.72 16 3 C -0.06 -0.90 5.14 -19.81 -0.10 -1.00 16 4 C -0.12 -1.87 9.66 22.23 0.21 -1.66 16 5 C -0.09 -1.78 7.36 22.53 0.17 -1.61 16 6 C -0.15 -3.84 5.21 -20.09 -0.10 -3.94 16 7 C 0.56 17.39 7.35 86.79 0.64 18.03 16 8 O -0.58 -22.38 16.31 -3.90 -0.06 -22.45 16 9 N -0.60 -17.04 2.97 -821.46 -2.44 -19.48 16 10 C 0.11 2.61 4.86 86.51 0.42 3.03 16 11 C -0.14 -4.68 5.67 30.82 0.17 -4.50 16 12 C 0.17 6.61 2.73 45.02 0.12 6.73 16 13 N -0.74 -36.85 5.12 -322.81 -1.65 -38.51 16 14 C -0.23 -12.64 9.93 84.03 0.83 -11.81 16 15 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 16 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 17 N -0.97 -59.99 13.06 21.65 0.28 -59.70 16 18 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 C -0.13 -4.34 5.55 30.67 0.17 -4.17 16 23 C 0.12 3.50 6.44 86.36 0.56 4.06 16 24 C -0.08 -1.98 9.25 22.53 0.21 -1.77 16 25 C -0.09 -1.70 5.13 -19.90 -0.10 -1.80 16 26 C -0.09 -1.26 5.38 29.85 0.16 -1.10 16 27 C -0.15 -1.79 9.71 71.98 0.70 -1.09 16 28 H 0.05 0.59 6.79 -2.39 -0.02 0.57 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.09 0.65 8.05 -2.38 -0.02 0.63 16 32 H 0.09 0.73 5.57 -2.39 -0.01 0.72 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 2.35 6.31 -2.91 -0.02 2.33 16 35 H 0.10 1.92 8.09 -2.38 -0.02 1.90 16 36 H 0.11 2.33 4.58 -2.39 -0.01 2.32 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 40 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 41 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 44 H 0.08 2.53 7.00 -2.39 -0.02 2.51 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.11 3.04 8.04 -2.91 -0.02 3.01 16 47 H 0.09 1.04 5.61 -2.39 -0.01 1.03 16 48 H 0.07 1.03 8.05 -2.39 -0.02 1.02 16 49 H 0.06 0.69 6.76 -2.39 -0.02 0.68 16 50 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.91 396.49 3.74 -67.17 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.20 Total: 33.55 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.38 Total: -8.20 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -3.81 Total: -117.69 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.91 3.74 -67.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997458999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.458 kcal (2) G-P(sol) polarization free energy of solvation -70.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds