Wall clock time and date at job start Tue Mar 31 2020 16:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38238 * 119.99934 * 89.99774 * 3 2 1 5 5 C 1.38229 * 119.99946 * 180.02562 * 4 3 2 6 6 C 1.38239 * 120.00098 * 359.95263 * 5 4 3 7 7 C 1.50699 * 119.99799 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47740 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.46904 * 240.00415 * 7 6 5 10 10 C 1.50700 * 109.47179 * 120.00265 * 7 6 5 11 11 O 1.21276 * 119.99652 * 17.99606 * 10 7 6 12 12 N 1.34772 * 119.99952 * 197.99529 * 10 7 6 13 13 C 1.46501 * 119.99911 * 184.18660 * 12 10 7 14 14 C 1.46502 * 120.00145 * 4.18277 * 12 10 7 15 15 C 1.53777 * 113.61712 * 223.51920 * 14 12 10 16 16 C 1.53955 * 87.02079 * 220.05203 * 15 14 12 17 17 N 1.46498 * 113.74189 * 139.94428 * 16 15 14 18 18 C 1.36945 * 120.00087 * 107.40461 * 17 16 15 19 19 H 1.08005 * 119.99625 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47130 * 89.99979 * 22 20 18 24 24 H 1.48504 * 109.47101 * 210.00261 * 22 20 18 25 25 H 1.48504 * 109.47270 * 329.99844 * 22 20 18 26 26 C 1.53783 * 87.11251 * 25.36360 * 16 15 14 27 27 C 1.38234 * 119.99904 * 0.28153 * 6 5 4 28 28 C 1.38232 * 119.99776 * 359.50757 * 27 6 5 29 29 H 1.08998 * 109.47421 * 300.00019 * 1 2 3 30 30 H 1.09003 * 109.47075 * 60.00206 * 1 2 3 31 31 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47421 * 239.99981 * 2 1 3 33 33 H 1.09003 * 109.47075 * 119.99794 * 2 1 3 34 34 H 1.08005 * 119.99812 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00133 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.47014 * 173.45910 * 9 7 6 37 37 H 1.08993 * 109.47396 * 53.45393 * 9 7 6 38 38 H 1.09006 * 109.46560 * 293.45249 * 9 7 6 39 39 H 1.08995 * 109.47515 * 84.84961 * 13 12 10 40 40 H 1.09002 * 109.47095 * 204.84628 * 13 12 10 41 41 H 1.08999 * 109.46906 * 324.84562 * 13 12 10 42 42 H 1.08999 * 112.85167 * 354.72187 * 14 12 10 43 43 H 1.09002 * 113.61706 * 334.56835 * 15 14 12 44 44 H 1.08997 * 113.61791 * 105.46958 * 15 14 12 45 45 H 1.09003 * 113.53551 * 270.81072 * 16 15 14 46 46 H 0.96997 * 120.00447 * 287.39669 * 17 16 15 47 47 H 0.96993 * 119.99768 * 179.97438 * 21 20 18 48 48 H 1.08998 * 113.61354 * 220.09015 * 26 16 15 49 49 H 1.08995 * 113.61266 * 89.18829 * 26 16 15 50 50 H 1.07994 * 119.99649 * 179.72635 * 27 6 5 51 51 H 1.08004 * 119.99724 * 180.25109 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7229 3.3759 1.1972 6 6 2.9538 4.0274 0.0000 7 6 3.4561 5.4482 0.0001 8 1 3.5773 5.7908 1.0277 9 6 2.4485 6.3454 -0.7216 10 6 4.7839 5.5117 -0.7098 11 8 5.1233 4.6072 -1.4430 12 7 5.5942 6.5735 -0.5300 13 6 6.8424 6.6794 -1.2895 14 6 5.2267 7.6219 0.4251 15 6 5.4610 9.0467 -0.1039 16 6 5.9661 9.4009 1.3067 17 7 7.1357 10.2830 1.3101 18 6 7.0036 11.5939 1.6835 19 1 6.0370 11.9775 1.9752 20 6 8.1119 12.4297 1.6873 21 7 9.2898 11.9623 1.3313 22 14 7.9315 14.2179 2.1960 23 1 8.1447 14.3398 3.6605 24 1 8.9388 15.0406 1.4790 25 1 6.5678 14.6951 1.8528 26 6 6.3166 7.9125 1.4703 27 6 2.7188 3.3774 -1.1971 28 6 2.2627 2.0725 -1.1971 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0822 1.5635 2.1325 35 1 2.9025 3.8852 2.1325 36 1 2.7527 7.3873 -0.6213 37 1 1.4610 6.2111 -0.2802 38 1 2.4142 6.0770 -1.7775 39 1 6.6392 7.1283 -2.2617 40 1 7.5491 7.3030 -0.7420 41 1 7.2676 5.6856 -1.4299 42 1 4.2367 7.4735 0.8563 43 1 6.2325 9.1061 -0.8716 44 1 4.5438 9.5652 -0.3832 45 1 5.1780 9.7404 1.9788 46 1 8.0038 9.9386 1.0479 47 1 10.0642 12.5464 1.3336 48 1 6.0892 7.5167 2.4601 49 1 7.3224 7.6613 1.1338 50 1 2.8950 3.8879 -2.1323 51 1 2.0830 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999555918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:57 Heat of formation + Delta-G solvation = 11.307811 kcal Electronic energy + Delta-G solvation = -28051.561762 eV Core-core repulsion = 24337.313428 eV Total energy + Delta-G solvation = -3714.248334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.66608 -39.40135 -38.12685 -35.27151 -34.59113 -32.95823 -32.77259 -31.00323 -29.96042 -28.86432 -27.25841 -25.29039 -24.95254 -24.50006 -23.08837 -22.84113 -22.28748 -20.78381 -19.36271 -18.71816 -17.28323 -17.15766 -16.55464 -15.83116 -15.68115 -15.28859 -14.99747 -14.70113 -14.60208 -14.08961 -13.97075 -13.93950 -13.69983 -13.31571 -13.23736 -13.06428 -12.88110 -12.66346 -12.34259 -12.24633 -12.04483 -11.94299 -11.79448 -11.75760 -11.60791 -11.38593 -11.30161 -10.95841 -10.93654 -10.89680 -10.63089 -10.50071 -10.33908 -10.07463 -9.78619 -9.48708 -8.95662 -8.92969 -8.62021 -8.43509 -7.04541 -5.84982 -3.14453 1.21032 1.37074 2.66962 3.08731 3.38789 3.44296 3.45876 3.68875 4.41538 4.46530 4.54785 4.59047 4.67350 4.84412 4.90847 4.96969 4.97720 5.05007 5.07550 5.10476 5.17404 5.27712 5.37751 5.39064 5.41259 5.48171 5.56416 5.61319 5.63996 5.70247 5.72880 5.77607 5.84028 5.86629 5.90596 5.93606 5.98756 6.01232 6.03152 6.23040 6.23684 6.32224 6.38285 6.47299 6.51658 6.56120 6.76099 6.90505 6.93849 7.54536 7.63229 8.24417 8.33120 9.44578 10.00852 10.34907 11.37172 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.002066 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.966326 B =13548.792695 C =13846.543330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.074 4.074 7 C -0.072 4.072 8 H 0.101 0.899 9 C -0.140 4.140 10 C 0.518 3.482 11 O -0.541 6.541 12 N -0.595 5.595 13 C 0.085 3.915 14 C 0.104 3.896 15 C -0.175 4.175 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.165 4.165 27 C -0.074 4.074 28 C -0.123 4.123 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.122 0.878 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 -20.370 -2.762 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.141 4.141 5 C -0.127 4.127 6 C -0.075 4.075 7 C -0.093 4.093 8 H 0.119 0.881 9 C -0.197 4.197 10 C 0.305 3.695 11 O -0.419 6.419 12 N -0.327 5.327 13 C -0.058 4.058 14 C 0.000 4.000 15 C -0.217 4.217 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.205 4.205 27 C -0.092 4.092 28 C -0.141 4.141 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.140 0.860 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.613 -20.631 -3.097 26.669 hybrid contribution 0.430 1.009 0.192 1.113 sum -16.183 -19.623 -2.905 25.600 Atomic orbital electron populations 1.21742 0.94804 1.01543 1.02224 1.20534 0.96095 0.92877 1.02715 1.19869 0.99224 0.96061 0.93291 1.20903 1.01045 0.94804 0.97392 1.21004 0.99597 0.94884 0.97243 1.19357 1.00075 0.94439 0.93598 1.20284 0.93313 0.94137 1.01582 0.88130 1.21786 0.98192 0.99008 1.00715 1.20430 0.85705 0.81411 0.81928 1.90673 1.74865 1.37212 1.39116 1.47839 1.21703 1.21733 1.41386 1.21599 0.85858 1.02630 0.95690 1.22818 0.99028 0.87361 0.90837 1.24362 1.01683 0.93253 1.02393 1.21380 0.91476 0.88122 0.93344 1.42353 1.05652 1.07693 1.78994 1.19295 0.94460 0.86356 1.37662 0.90981 1.24776 0.95485 0.98453 1.02060 1.69656 0.98914 1.35364 1.53942 0.86182 0.77076 0.84803 0.78057 1.21655 1.21748 1.20695 1.23964 0.99052 0.99478 0.97993 1.20948 0.96077 0.94404 0.97808 1.20978 1.00781 0.94969 0.97366 0.92566 0.92571 0.92540 0.91163 0.91179 0.86315 0.86128 0.91163 0.91185 0.91940 0.92845 0.90256 0.91166 0.87206 0.89755 0.92058 0.90270 0.78061 0.93396 0.91635 0.89761 0.86011 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.83 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 5 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 6 C -0.07 -0.87 4.57 -104.62 -0.48 -1.34 16 7 C -0.07 -0.80 2.04 -92.92 -0.19 -0.99 16 8 H 0.10 0.98 6.41 -51.93 -0.33 0.65 16 9 C -0.14 -1.32 8.69 37.16 0.32 -1.00 16 10 C 0.52 7.29 6.81 -10.99 -0.07 7.22 16 11 O -0.54 -9.22 14.28 5.56 0.08 -9.14 16 12 N -0.60 -8.13 3.09 -173.00 -0.53 -8.67 16 13 C 0.08 1.16 9.11 59.85 0.54 1.71 16 14 C 0.10 1.35 3.53 -67.12 -0.24 1.11 16 15 C -0.17 -2.70 7.37 -25.83 -0.19 -2.89 16 16 C 0.17 3.04 4.48 -67.03 -0.30 2.74 16 17 N -0.71 -16.75 5.41 -52.54 -0.28 -17.04 16 18 C -0.25 -6.55 9.97 -15.06 -0.15 -6.70 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.16 -2.47 7.33 -25.91 -0.19 -2.66 16 27 C -0.07 -0.89 7.91 -39.58 -0.31 -1.20 16 28 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 36 H 0.07 0.65 6.96 -51.93 -0.36 0.28 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.62 7.61 -51.93 -0.40 0.23 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.10 6.11 -51.93 -0.32 0.78 16 41 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 42 H 0.11 1.19 5.08 -51.93 -0.26 0.93 16 43 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 46 H 0.39 9.74 7.92 -40.82 -0.32 9.41 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.35 6.57 -51.93 -0.34 1.01 16 50 H 0.12 1.50 7.16 -52.49 -0.38 1.13 16 51 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -31.15 403.93 -10.28 -41.43 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.49 Total: 9.17 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.84 Total: -11.97 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.09 Total: -52.30 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.15 -10.28 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999555918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.741 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds