Wall clock time and date at job start Tue Mar 31 2020 16:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38238 * 119.99934 * 89.99774 * 3 2 1 5 5 C 1.38229 * 119.99946 * 180.02562 * 4 3 2 6 6 C 1.38239 * 120.00098 * 359.95263 * 5 4 3 7 7 C 1.50699 * 119.99799 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47740 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.46904 * 240.00415 * 7 6 5 10 10 C 1.50700 * 109.47179 * 120.00265 * 7 6 5 11 11 O 1.21276 * 119.99652 * 17.99606 * 10 7 6 12 12 N 1.34772 * 119.99952 * 197.99529 * 10 7 6 13 13 C 1.46501 * 119.99911 * 184.18660 * 12 10 7 14 14 C 1.46502 * 120.00145 * 4.18277 * 12 10 7 15 15 C 1.53777 * 113.61712 * 223.51920 * 14 12 10 16 16 C 1.53955 * 87.02079 * 220.05203 * 15 14 12 17 17 N 1.46498 * 113.74189 * 139.94428 * 16 15 14 18 18 C 1.36945 * 120.00087 * 107.40461 * 17 16 15 19 19 H 1.08005 * 119.99625 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99782 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47130 * 89.99979 * 22 20 18 24 24 H 1.48504 * 109.47101 * 210.00261 * 22 20 18 25 25 H 1.48504 * 109.47270 * 329.99844 * 22 20 18 26 26 C 1.53783 * 87.11251 * 25.36360 * 16 15 14 27 27 C 1.38234 * 119.99904 * 0.28153 * 6 5 4 28 28 C 1.38232 * 119.99776 * 359.50757 * 27 6 5 29 29 H 1.08998 * 109.47421 * 300.00019 * 1 2 3 30 30 H 1.09003 * 109.47075 * 60.00206 * 1 2 3 31 31 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47421 * 239.99981 * 2 1 3 33 33 H 1.09003 * 109.47075 * 119.99794 * 2 1 3 34 34 H 1.08005 * 119.99812 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00133 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.47014 * 173.45910 * 9 7 6 37 37 H 1.08993 * 109.47396 * 53.45393 * 9 7 6 38 38 H 1.09006 * 109.46560 * 293.45249 * 9 7 6 39 39 H 1.08995 * 109.47515 * 84.84961 * 13 12 10 40 40 H 1.09002 * 109.47095 * 204.84628 * 13 12 10 41 41 H 1.08999 * 109.46906 * 324.84562 * 13 12 10 42 42 H 1.08999 * 112.85167 * 354.72187 * 14 12 10 43 43 H 1.09002 * 113.61706 * 334.56835 * 15 14 12 44 44 H 1.08997 * 113.61791 * 105.46958 * 15 14 12 45 45 H 1.09003 * 113.53551 * 270.81072 * 16 15 14 46 46 H 0.96997 * 120.00447 * 287.39669 * 17 16 15 47 47 H 0.96993 * 119.99768 * 179.97438 * 21 20 18 48 48 H 1.08998 * 113.61354 * 220.09015 * 26 16 15 49 49 H 1.08995 * 113.61266 * 89.18829 * 26 16 15 50 50 H 1.07994 * 119.99649 * 179.72635 * 27 6 5 51 51 H 1.08004 * 119.99724 * 180.25109 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7229 3.3759 1.1972 6 6 2.9538 4.0274 0.0000 7 6 3.4561 5.4482 0.0001 8 1 3.5773 5.7908 1.0277 9 6 2.4485 6.3454 -0.7216 10 6 4.7839 5.5117 -0.7098 11 8 5.1233 4.6072 -1.4430 12 7 5.5942 6.5735 -0.5300 13 6 6.8424 6.6794 -1.2895 14 6 5.2267 7.6219 0.4251 15 6 5.4610 9.0467 -0.1039 16 6 5.9661 9.4009 1.3067 17 7 7.1357 10.2830 1.3101 18 6 7.0036 11.5939 1.6835 19 1 6.0370 11.9775 1.9752 20 6 8.1119 12.4297 1.6873 21 7 9.2898 11.9623 1.3313 22 14 7.9315 14.2179 2.1960 23 1 8.1447 14.3398 3.6605 24 1 8.9388 15.0406 1.4790 25 1 6.5678 14.6951 1.8528 26 6 6.3166 7.9125 1.4703 27 6 2.7188 3.3774 -1.1971 28 6 2.2627 2.0725 -1.1971 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0822 1.5635 2.1325 35 1 2.9025 3.8852 2.1325 36 1 2.7527 7.3873 -0.6213 37 1 1.4610 6.2111 -0.2802 38 1 2.4142 6.0770 -1.7775 39 1 6.6392 7.1283 -2.2617 40 1 7.5491 7.3030 -0.7420 41 1 7.2676 5.6856 -1.4299 42 1 4.2367 7.4735 0.8563 43 1 6.2325 9.1061 -0.8716 44 1 4.5438 9.5652 -0.3832 45 1 5.1780 9.7404 1.9788 46 1 8.0038 9.9386 1.0479 47 1 10.0642 12.5464 1.3336 48 1 6.0892 7.5167 2.4601 49 1 7.3224 7.6613 1.1338 50 1 2.8950 3.8879 -2.1323 51 1 2.0830 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999555918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:56 Heat of formation + Delta-G solvation = -4.567755 kcal Electronic energy + Delta-G solvation = -28052.250178 eV Core-core repulsion = 24337.313428 eV Total energy + Delta-G solvation = -3714.936750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71387 -40.33639 -39.31679 -36.11871 -36.03569 -34.57792 -33.52060 -31.81870 -31.77060 -29.60434 -28.31677 -26.62361 -26.30788 -25.58328 -24.25068 -23.65821 -23.35939 -21.56976 -20.69926 -19.85410 -19.00683 -18.34150 -17.57455 -16.73024 -16.72787 -16.35175 -16.20788 -15.99773 -15.80065 -15.35352 -15.02362 -14.68303 -14.60386 -14.46045 -14.42073 -14.09082 -13.94344 -13.54235 -13.39701 -13.27009 -13.14684 -13.11488 -12.98196 -12.86578 -12.78081 -12.51779 -12.28414 -12.21063 -12.10993 -12.02554 -11.88773 -11.65084 -11.63284 -11.57679 -11.43497 -10.84613 -10.66082 -9.73379 -9.61728 -9.39636 -8.95813 -7.92750 -5.20628 0.42331 0.57760 1.50071 1.50681 1.57858 1.59045 2.00883 2.58815 2.88116 3.39468 3.49974 3.64025 3.75037 3.79086 3.89355 3.95854 3.97868 4.15221 4.16165 4.24773 4.31402 4.34059 4.41110 4.41928 4.54289 4.57098 4.61355 4.67331 4.71325 4.74624 4.80220 4.83915 4.88671 4.93762 4.96309 5.08963 5.10314 5.11912 5.17049 5.20443 5.24242 5.27413 5.40163 5.48864 5.54528 5.58337 5.61899 5.75187 5.77339 6.16245 6.29286 6.44479 7.14167 7.35785 8.13120 8.34287 9.30508 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.002066 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.966326 B =13548.792695 C =13846.543330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.090 4.090 7 C -0.066 4.066 8 H 0.121 0.879 9 C -0.136 4.136 10 C 0.515 3.485 11 O -0.575 6.575 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.126 3.874 15 C -0.168 4.168 16 C 0.152 3.848 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.082 0.918 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.970 3.030 23 H -0.289 1.289 24 H -0.301 1.301 25 H -0.267 1.267 26 C -0.157 4.157 27 C -0.092 4.092 28 C -0.136 4.136 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.144 0.856 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.372 0.628 47 H 0.249 0.751 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.108 0.892 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 -21.171 -1.426 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.091 4.091 7 C -0.087 4.087 8 H 0.139 0.861 9 C -0.193 4.193 10 C 0.304 3.696 11 O -0.454 6.454 12 N -0.326 5.326 13 C -0.057 4.057 14 C 0.022 3.978 15 C -0.209 4.209 16 C 0.042 3.958 17 N -0.363 5.363 18 C -0.371 4.371 19 H 0.100 0.900 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.216 1.216 24 H -0.228 1.228 25 H -0.192 1.192 26 C -0.197 4.197 27 C -0.110 4.110 28 C -0.154 4.154 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.161 0.839 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.204 0.796 47 H 0.058 0.942 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.126 0.874 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.232 -21.453 -1.756 28.865 hybrid contribution 1.166 1.137 -0.254 1.648 sum -18.066 -20.317 -2.010 27.261 Atomic orbital electron populations 1.21718 0.93976 1.02375 1.01936 1.20584 0.96731 0.91454 1.03385 1.20181 0.98476 0.97154 0.92981 1.21232 1.00410 0.94790 0.98275 1.21283 0.99217 0.95276 0.97556 1.19487 1.00816 0.94875 0.93895 1.20327 0.91582 0.94524 1.02250 0.86078 1.21787 0.98640 0.98822 1.00075 1.21034 0.86496 0.80627 0.81446 1.90660 1.75745 1.38405 1.40636 1.47892 1.21541 1.21894 1.41315 1.21541 0.86149 1.02150 0.95851 1.22752 0.99790 0.85752 0.89494 1.24149 1.01510 0.95086 1.00184 1.21757 0.90155 0.88802 0.95079 1.42557 1.06817 1.07645 1.79244 1.19733 0.94509 0.87610 1.35277 0.90025 1.25550 0.95483 1.02362 1.03616 1.69814 0.99498 1.36373 1.56463 0.85182 0.77199 0.80321 0.77317 1.21575 1.22753 1.19226 1.23838 0.99083 0.97164 0.99657 1.20974 0.97222 0.95159 0.97657 1.21175 1.00991 0.94794 0.98407 0.92598 0.93111 0.91167 0.90858 0.90174 0.84221 0.84198 0.90498 0.89460 0.93030 0.92714 0.90676 0.91764 0.83874 0.91646 0.90692 0.89209 0.79596 0.94222 0.89796 0.91216 0.87428 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.08 -1.08 6.06 29.85 0.18 -0.90 16 3 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 4 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 5 C -0.12 -2.16 9.67 22.27 0.22 -1.95 16 6 C -0.09 -1.97 4.57 -19.87 -0.09 -2.06 16 7 C -0.07 -1.31 2.04 -12.29 -0.03 -1.34 16 8 H 0.12 1.88 6.41 -2.39 -0.02 1.87 16 9 C -0.14 -2.25 8.69 71.98 0.63 -1.62 16 10 C 0.51 13.90 6.81 87.66 0.60 14.49 16 11 O -0.57 -19.61 14.28 -3.02 -0.04 -19.65 16 12 N -0.60 -15.50 3.09 -819.65 -2.53 -18.03 16 13 C 0.09 2.37 9.11 127.77 1.16 3.53 16 14 C 0.13 2.95 3.53 45.52 0.16 3.11 16 15 C -0.17 -4.90 7.37 31.18 0.23 -4.67 16 16 C 0.15 5.21 4.48 45.58 0.20 5.42 16 17 N -0.73 -34.20 5.41 -320.15 -1.73 -35.94 16 18 C -0.24 -12.60 9.97 84.03 0.84 -11.77 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 22 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C -0.16 -4.43 7.33 31.12 0.23 -4.20 16 27 C -0.09 -2.18 7.91 22.27 0.18 -2.00 16 28 C -0.14 -2.82 9.70 22.27 0.22 -2.61 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.14 1.98 7.95 -2.91 -0.02 1.96 16 36 H 0.08 1.16 6.96 -2.39 -0.02 1.15 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 0.97 7.61 -2.38 -0.02 0.95 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 2.12 6.11 -2.39 -0.01 2.10 16 41 H 0.06 1.84 7.53 -2.39 -0.02 1.82 16 42 H 0.14 2.48 5.08 -2.39 -0.01 2.47 16 43 H 0.06 2.20 6.95 -2.39 -0.02 2.18 16 44 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 45 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 46 H 0.37 19.22 7.92 -92.71 -0.73 18.49 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.07 2.20 6.57 -2.39 -0.02 2.19 16 50 H 0.11 2.76 7.16 -2.91 -0.02 2.74 16 51 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -68.02 403.93 4.20 -63.83 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.18 Total: 35.83 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 6.01 Total: -14.99 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -3.98 Total: -111.93 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.04 Total: -19.65 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.02 4.20 -63.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999555918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.258 kcal (2) G-P(sol) polarization free energy of solvation -68.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds