Wall clock time and date at job start Tue Mar 31 2020 16:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46985 * 2 1 4 4 C 1.38230 * 119.99980 * 90.00743 * 3 2 1 5 5 C 1.38240 * 120.00263 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99617 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99805 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46917 * 359.97438 * 7 6 5 9 9 C 1.52998 * 109.46984 * 119.99865 * 7 6 5 10 10 C 1.50697 * 109.47244 * 239.99920 * 7 6 5 11 11 O 1.21286 * 119.99983 * 263.59654 * 10 7 6 12 12 N 1.34774 * 120.00258 * 83.59113 * 10 7 6 13 13 C 1.46928 * 120.62943 * 5.08906 * 12 10 7 14 14 C 1.53193 * 108.77762 * 233.58673 * 13 12 10 15 15 C 1.53043 * 109.31063 * 305.36262 * 14 13 12 16 16 C 1.53043 * 109.53541 * 61.36510 * 15 14 13 17 17 H 1.08997 * 109.49447 * 58.61938 * 16 15 14 18 18 N 1.46500 * 109.49702 * 178.68596 * 16 15 14 19 19 C 1.36938 * 119.99590 * 275.00416 * 18 16 15 20 20 H 1.08000 * 120.00279 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99935 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00031 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46978 * 59.99523 * 23 21 19 25 25 H 1.48501 * 109.47422 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46758 * 299.99575 * 23 21 19 27 27 C 1.46925 * 120.63349 * 184.80884 * 12 10 7 28 28 C 1.38239 * 119.99998 * 0.25201 * 6 5 4 29 29 C 1.38234 * 119.99800 * 359.49567 * 28 6 5 30 30 H 1.08998 * 109.47156 * 299.99869 * 1 2 3 31 31 H 1.09001 * 109.47444 * 59.99888 * 1 2 3 32 32 H 1.09001 * 109.47580 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46651 * 240.00376 * 2 1 3 34 34 H 1.08990 * 109.47324 * 120.00572 * 2 1 3 35 35 H 1.08000 * 120.00008 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00242 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47295 * 55.32748 * 9 7 6 38 38 H 1.09003 * 109.47397 * 295.32709 * 9 7 6 39 39 H 1.09001 * 109.47145 * 175.33077 * 9 7 6 40 40 H 1.08997 * 109.58669 * 353.37480 * 13 12 10 41 41 H 1.08998 * 109.58577 * 113.65205 * 13 12 10 42 42 H 1.08998 * 109.49755 * 65.31608 * 14 13 12 43 43 H 1.08999 * 109.49855 * 185.41547 * 14 13 12 44 44 H 1.08993 * 109.46089 * 181.38537 * 15 14 13 45 45 H 1.08996 * 109.46081 * 301.36205 * 15 14 13 46 46 H 0.96997 * 120.00207 * 94.99836 * 18 16 15 47 47 H 0.96998 * 120.00177 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58607 * 246.20295 * 27 12 10 49 49 H 1.09004 * 109.58231 * 6.62587 * 27 12 10 50 50 H 1.08000 * 119.99640 * 179.72764 * 28 6 5 51 51 H 1.08000 * 119.99860 * 180.22884 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1972 6 6 2.9533 4.0276 0.0000 7 6 3.4545 5.4488 0.0000 8 1 3.5746 5.7917 1.0277 9 6 4.8024 5.5142 -0.7208 10 6 2.4614 6.3317 -0.7108 11 8 2.6229 6.6063 -1.8811 12 7 1.3937 6.8162 -0.0461 13 6 1.2424 6.5852 1.3970 14 6 -0.1326 5.9610 1.6549 15 6 -1.2160 6.8530 1.0441 16 6 -1.0058 6.9505 -0.4687 17 1 -1.0404 5.9526 -0.9058 18 7 -2.0614 7.7788 -1.0566 19 6 -3.2646 7.2179 -1.3924 20 1 -3.4353 6.1648 -1.2243 21 6 -4.2647 8.0027 -1.9500 22 7 -4.0567 9.2859 -2.1554 23 14 -5.9059 7.2374 -2.4088 24 1 -6.5382 6.6583 -1.1964 25 1 -6.7956 8.2798 -2.9807 26 1 -5.6886 6.1658 -3.4137 27 6 0.3622 7.5906 -0.7496 28 6 2.7183 3.3776 -1.1972 29 6 2.2630 2.0723 -1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 2.0825 1.5634 2.1324 36 1 2.9028 3.8851 2.1325 37 1 4.7002 5.0943 -1.7215 38 1 5.5422 4.9423 -0.1606 39 1 5.1254 6.5527 -0.7938 40 1 2.0223 5.9065 1.7422 41 1 1.3213 7.5332 1.9290 42 1 -0.1749 4.9724 1.1978 43 1 -0.2966 5.8731 2.7289 44 1 -2.1970 6.4238 1.2475 45 1 -1.1570 7.8486 1.4836 46 1 -1.9081 8.7246 -1.2079 47 1 -4.7553 9.8342 -2.5454 48 1 0.3682 8.6193 -0.3892 49 1 0.5612 7.5755 -1.8212 50 1 2.8940 3.8883 -2.1325 51 1 2.0830 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000471596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:41 Heat of formation + Delta-G solvation = -16.643773 kcal Electronic energy + Delta-G solvation = -29234.326133 eV Core-core repulsion = 25518.865728 eV Total energy + Delta-G solvation = -3715.460405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59976 -39.21468 -37.38283 -35.26687 -34.41058 -32.67882 -32.07162 -31.22073 -30.99973 -28.67638 -28.38484 -25.71711 -24.60870 -23.87559 -22.93896 -22.59279 -22.01243 -20.90377 -19.81924 -18.62630 -17.28748 -17.17223 -16.62734 -15.64698 -15.60974 -15.18945 -14.93489 -14.46713 -14.09885 -14.04897 -13.96702 -13.82149 -13.51283 -13.44749 -13.27333 -13.19823 -12.92275 -12.90020 -12.60425 -12.35819 -12.08668 -11.84297 -11.81601 -11.55431 -11.33211 -11.07235 -10.94732 -10.91758 -10.87998 -10.85268 -10.58014 -10.39828 -10.32992 -10.09585 -9.73522 -9.57312 -8.99811 -8.89782 -8.58301 -8.35508 -6.97648 -5.76613 -3.06104 1.17421 1.32308 2.75804 3.15666 3.44361 3.48829 3.49782 3.63004 4.49315 4.52794 4.59507 4.62605 4.72308 4.81314 4.87234 4.95869 5.09476 5.16913 5.17722 5.20242 5.31775 5.34494 5.37621 5.46148 5.54016 5.58036 5.62038 5.69233 5.72233 5.74354 5.77787 5.78329 5.84246 5.92033 5.98332 6.05419 6.07623 6.09815 6.17920 6.27289 6.31923 6.42138 6.48174 6.51674 6.57606 6.74013 6.89271 6.90239 7.06760 7.61836 7.69701 8.33972 8.41726 9.52513 10.08051 10.43335 11.45886 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003673 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.401806 B = 7621.252139 C = 9092.277524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.082 4.082 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.078 4.078 7 C -0.071 4.071 8 H 0.097 0.903 9 C -0.129 4.129 10 C 0.521 3.479 11 O -0.540 6.540 12 N -0.602 5.602 13 C 0.106 3.894 14 C -0.131 4.131 15 C -0.136 4.136 16 C 0.170 3.830 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.106 3.894 28 C -0.100 4.100 29 C -0.114 4.114 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.126 0.874 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.532 -14.759 10.321 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.078 4.078 7 C -0.093 4.093 8 H 0.115 0.885 9 C -0.187 4.187 10 C 0.308 3.692 11 O -0.417 6.417 12 N -0.334 5.334 13 C -0.017 4.017 14 C -0.170 4.170 15 C -0.177 4.177 16 C 0.059 3.941 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.016 4.016 28 C -0.118 4.118 29 C -0.132 4.132 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.144 0.856 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.442 -14.688 9.625 24.750 hybrid contribution -1.092 0.026 -0.130 1.100 sum 16.350 -14.661 9.495 23.926 Atomic orbital electron populations 1.21759 0.94511 1.01665 1.02641 1.20540 0.96361 0.92626 1.02607 1.19914 0.98766 0.96320 0.93235 1.20934 1.00310 0.94799 0.97463 1.20970 0.99712 0.94913 0.97002 1.19388 1.00736 0.93989 0.93709 1.20334 0.95492 0.91988 1.01441 0.88468 1.21648 0.93586 1.02496 1.00931 1.20384 0.81787 0.79918 0.87071 1.90687 1.75077 1.59456 1.16442 1.48083 1.22390 1.53769 1.09189 1.21823 0.98485 1.00600 0.80779 1.21902 0.94567 0.99976 1.00554 1.22271 0.97845 0.98808 0.98776 1.20544 0.86946 0.95061 0.91538 0.93318 1.42306 1.11437 1.08674 1.73803 1.19153 0.90198 0.93663 1.33963 0.91283 1.24732 0.98520 0.95688 1.01788 1.69648 1.33809 1.04669 1.49907 0.86277 0.83825 0.77914 0.78234 1.21274 1.21649 1.21239 1.22086 0.86964 0.94149 0.98429 1.21094 0.98075 0.94556 0.98041 1.21013 0.99811 0.94788 0.97622 0.92421 0.92322 0.92471 0.91162 0.91191 0.86138 0.86056 0.91351 0.91966 0.91931 0.90305 0.91471 0.91798 0.91501 0.91642 0.92533 0.78207 0.93417 0.91751 0.89043 0.85617 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.08 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.08 -0.83 5.13 -104.63 -0.54 -1.37 16 4 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 5 C -0.11 -1.05 9.05 -39.58 -0.36 -1.41 16 6 C -0.08 -0.88 4.68 -104.62 -0.49 -1.37 16 7 C -0.07 -0.80 2.11 -92.93 -0.20 -1.00 16 8 H 0.10 0.87 6.07 -51.93 -0.32 0.55 16 9 C -0.13 -1.34 8.51 37.16 0.32 -1.03 16 10 C 0.52 7.99 6.43 -10.99 -0.07 7.92 16 11 O -0.54 -10.24 15.60 5.55 0.09 -10.15 16 12 N -0.60 -9.11 2.97 -172.50 -0.51 -9.62 16 13 C 0.11 1.26 6.27 -3.71 -0.02 1.23 16 14 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 15 C -0.14 -2.37 5.46 -26.69 -0.15 -2.52 16 16 C 0.17 3.46 2.94 -67.58 -0.20 3.26 16 17 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 18 N -0.72 -18.24 5.13 -53.09 -0.27 -18.51 16 19 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.11 1.95 5.92 -3.49 -0.02 1.93 16 28 C -0.10 -1.24 8.76 -39.58 -0.35 -1.59 16 29 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.52 8.09 -51.92 -0.42 0.10 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.90 7.54 -52.49 -0.40 0.50 16 37 H 0.07 0.79 7.14 -51.93 -0.37 0.42 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.74 4.37 -51.93 -0.23 0.51 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.09 1.89 7.03 -51.93 -0.37 1.53 16 50 H 0.13 1.68 7.56 -52.49 -0.40 1.29 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -32.34 403.33 -10.66 -42.99 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.69 Total: 9.20 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.05 Total: -9.97 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.06 Total: -55.69 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.34 -10.66 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000471596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.349 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds