Wall clock time and date at job start Tue Mar 31 2020 16:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46985 * 2 1 4 4 C 1.38230 * 119.99980 * 90.00743 * 3 2 1 5 5 C 1.38240 * 120.00263 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99617 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99805 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46917 * 359.97438 * 7 6 5 9 9 C 1.52998 * 109.46984 * 119.99865 * 7 6 5 10 10 C 1.50697 * 109.47244 * 239.99920 * 7 6 5 11 11 O 1.21286 * 119.99983 * 263.59654 * 10 7 6 12 12 N 1.34774 * 120.00258 * 83.59113 * 10 7 6 13 13 C 1.46928 * 120.62943 * 5.08906 * 12 10 7 14 14 C 1.53193 * 108.77762 * 233.58673 * 13 12 10 15 15 C 1.53043 * 109.31063 * 305.36262 * 14 13 12 16 16 C 1.53043 * 109.53541 * 61.36510 * 15 14 13 17 17 H 1.08997 * 109.49447 * 58.61938 * 16 15 14 18 18 N 1.46500 * 109.49702 * 178.68596 * 16 15 14 19 19 C 1.36938 * 119.99590 * 275.00416 * 18 16 15 20 20 H 1.08000 * 120.00279 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99935 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00031 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46978 * 59.99523 * 23 21 19 25 25 H 1.48501 * 109.47422 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46758 * 299.99575 * 23 21 19 27 27 C 1.46925 * 120.63349 * 184.80884 * 12 10 7 28 28 C 1.38239 * 119.99998 * 0.25201 * 6 5 4 29 29 C 1.38234 * 119.99800 * 359.49567 * 28 6 5 30 30 H 1.08998 * 109.47156 * 299.99869 * 1 2 3 31 31 H 1.09001 * 109.47444 * 59.99888 * 1 2 3 32 32 H 1.09001 * 109.47580 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46651 * 240.00376 * 2 1 3 34 34 H 1.08990 * 109.47324 * 120.00572 * 2 1 3 35 35 H 1.08000 * 120.00008 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.00242 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47295 * 55.32748 * 9 7 6 38 38 H 1.09003 * 109.47397 * 295.32709 * 9 7 6 39 39 H 1.09001 * 109.47145 * 175.33077 * 9 7 6 40 40 H 1.08997 * 109.58669 * 353.37480 * 13 12 10 41 41 H 1.08998 * 109.58577 * 113.65205 * 13 12 10 42 42 H 1.08998 * 109.49755 * 65.31608 * 14 13 12 43 43 H 1.08999 * 109.49855 * 185.41547 * 14 13 12 44 44 H 1.08993 * 109.46089 * 181.38537 * 15 14 13 45 45 H 1.08996 * 109.46081 * 301.36205 * 15 14 13 46 46 H 0.96997 * 120.00207 * 94.99836 * 18 16 15 47 47 H 0.96998 * 120.00177 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58607 * 246.20295 * 27 12 10 49 49 H 1.09004 * 109.58231 * 6.62587 * 27 12 10 50 50 H 1.08000 * 119.99640 * 179.72764 * 28 6 5 51 51 H 1.08000 * 119.99860 * 180.22884 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1972 6 6 2.9533 4.0276 0.0000 7 6 3.4545 5.4488 0.0000 8 1 3.5746 5.7917 1.0277 9 6 4.8024 5.5142 -0.7208 10 6 2.4614 6.3317 -0.7108 11 8 2.6229 6.6063 -1.8811 12 7 1.3937 6.8162 -0.0461 13 6 1.2424 6.5852 1.3970 14 6 -0.1326 5.9610 1.6549 15 6 -1.2160 6.8530 1.0441 16 6 -1.0058 6.9505 -0.4687 17 1 -1.0404 5.9526 -0.9058 18 7 -2.0614 7.7788 -1.0566 19 6 -3.2646 7.2179 -1.3924 20 1 -3.4353 6.1648 -1.2243 21 6 -4.2647 8.0027 -1.9500 22 7 -4.0567 9.2859 -2.1554 23 14 -5.9059 7.2374 -2.4088 24 1 -6.5382 6.6583 -1.1964 25 1 -6.7956 8.2798 -2.9807 26 1 -5.6886 6.1658 -3.4137 27 6 0.3622 7.5906 -0.7496 28 6 2.7183 3.3776 -1.1972 29 6 2.2630 2.0723 -1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 2.0825 1.5634 2.1324 36 1 2.9028 3.8851 2.1325 37 1 4.7002 5.0943 -1.7215 38 1 5.5422 4.9423 -0.1606 39 1 5.1254 6.5527 -0.7938 40 1 2.0223 5.9065 1.7422 41 1 1.3213 7.5332 1.9290 42 1 -0.1749 4.9724 1.1978 43 1 -0.2966 5.8731 2.7289 44 1 -2.1970 6.4238 1.2475 45 1 -1.1570 7.8486 1.4836 46 1 -1.9081 8.7246 -1.2079 47 1 -4.7553 9.8342 -2.5454 48 1 0.3682 8.6193 -0.3892 49 1 0.5612 7.5755 -1.8212 50 1 2.8940 3.8883 -2.1325 51 1 2.0830 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000471596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:41 Heat of formation + Delta-G solvation = -34.421496 kcal Electronic energy + Delta-G solvation = -29235.097033 eV Core-core repulsion = 25518.865728 eV Total energy + Delta-G solvation = -3716.231305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69276 -40.16567 -38.76462 -36.31449 -35.99080 -33.89315 -33.31992 -32.76005 -31.83212 -30.14046 -29.43459 -26.89543 -26.06831 -25.21281 -23.84533 -23.54307 -23.37831 -21.81859 -21.18681 -19.84833 -19.15636 -18.42114 -17.52731 -16.85007 -16.76382 -16.41166 -16.14349 -15.75200 -15.59824 -15.29127 -15.15059 -14.83298 -14.70070 -14.58227 -14.48487 -14.20800 -14.09715 -13.80466 -13.70190 -13.65429 -13.14125 -12.89178 -12.86654 -12.71096 -12.59517 -12.40658 -12.31577 -12.20976 -12.19005 -11.97304 -11.85619 -11.78425 -11.69902 -11.66106 -11.51892 -10.92895 -10.79764 -9.79808 -9.67822 -9.41307 -9.05299 -7.97702 -5.27539 0.35984 0.52158 1.43795 1.47250 1.53228 1.57723 1.96093 2.54121 2.81432 3.34839 3.52810 3.69044 3.76023 3.84837 3.95784 4.00070 4.06484 4.07302 4.11351 4.15360 4.24560 4.34158 4.35171 4.39036 4.52309 4.57558 4.59802 4.69241 4.71467 4.75305 4.81729 4.84268 4.87416 4.93470 5.05506 5.06515 5.08374 5.14110 5.16086 5.21534 5.27043 5.38446 5.39038 5.41113 5.49844 5.53034 5.57615 5.66817 5.75518 6.12197 6.23679 6.43816 7.13895 7.29585 8.02019 8.27091 9.25432 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.003673 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.401806 B = 7621.252139 C = 9092.277524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.088 4.088 7 C -0.060 4.060 8 H 0.135 0.865 9 C -0.128 4.128 10 C 0.514 3.486 11 O -0.587 6.587 12 N -0.602 5.602 13 C 0.102 3.898 14 C -0.120 4.120 15 C -0.127 4.127 16 C 0.170 3.830 17 H 0.024 0.976 18 N -0.735 5.735 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.071 4.071 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.119 3.881 28 C -0.123 4.123 29 C -0.132 4.132 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.099 0.901 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 -16.730 14.079 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.089 4.089 7 C -0.081 4.081 8 H 0.152 0.848 9 C -0.185 4.185 10 C 0.303 3.697 11 O -0.468 6.468 12 N -0.334 5.334 13 C -0.019 4.019 14 C -0.159 4.159 15 C -0.167 4.167 16 C 0.061 3.939 17 H 0.042 0.958 18 N -0.376 5.376 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.264 4.264 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.005 4.005 28 C -0.142 4.142 29 C -0.150 4.150 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.205 0.795 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.117 0.883 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.496 -16.708 13.435 28.315 hybrid contribution -1.362 0.571 -1.327 1.986 sum 17.134 -16.137 12.108 26.469 Atomic orbital electron populations 1.21751 0.94919 1.02292 1.01547 1.20575 0.95854 0.91647 1.03810 1.20203 0.98157 0.97276 0.93055 1.21321 0.99178 0.94909 0.98135 1.21325 0.98224 0.94999 0.97373 1.19431 1.01544 0.93911 0.93975 1.20365 0.94045 0.91009 1.02647 0.84767 1.21651 0.94021 1.02605 1.00226 1.21275 0.82137 0.79547 0.86715 1.90666 1.76247 1.61027 1.18820 1.48182 1.21395 1.53127 1.10671 1.22160 0.98759 1.02569 0.78422 1.21844 0.93448 0.98271 1.02316 1.22059 0.98688 0.99978 0.95972 1.20673 0.86769 0.93041 0.93407 0.95770 1.42479 1.11972 1.08574 1.74546 1.19476 0.91173 0.93747 1.32945 0.91179 1.25537 1.02081 0.96209 1.02531 1.69806 1.34695 1.05967 1.51346 0.85244 0.79599 0.76962 0.78169 1.20016 1.21881 1.20801 1.21642 0.87017 0.94819 0.97036 1.21059 0.99841 0.95332 0.97918 1.21135 1.00557 0.94680 0.98615 0.92605 0.94279 0.91029 0.90819 0.89160 0.83363 0.82522 0.93617 0.89133 0.92228 0.86606 0.89414 0.92585 0.87704 0.93699 0.92324 0.79462 0.93905 0.91239 0.92523 0.88287 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.08 -1.14 6.06 29.85 0.18 -0.96 16 3 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 4 C -0.12 -1.79 9.70 22.27 0.22 -1.57 16 5 C -0.10 -1.53 9.05 22.27 0.20 -1.33 16 6 C -0.09 -1.82 4.68 -19.86 -0.09 -1.92 16 7 C -0.06 -1.21 2.11 -12.29 -0.03 -1.24 16 8 H 0.13 1.70 6.07 -2.38 -0.01 1.69 16 9 C -0.13 -2.51 8.51 71.98 0.61 -1.89 16 10 C 0.51 15.66 6.43 87.66 0.56 16.22 16 11 O -0.59 -23.51 15.60 -3.05 -0.05 -23.56 16 12 N -0.60 -17.66 2.97 -818.06 -2.43 -20.08 16 13 C 0.10 2.01 6.27 86.36 0.54 2.55 16 14 C -0.12 -2.74 6.08 30.67 0.19 -2.55 16 15 C -0.13 -4.28 5.46 30.62 0.17 -4.12 16 16 C 0.17 7.13 2.94 45.22 0.13 7.27 16 17 H 0.02 1.12 8.08 -2.39 -0.02 1.10 16 18 N -0.74 -38.63 5.13 -321.88 -1.65 -40.28 16 19 C -0.24 -13.86 9.93 84.03 0.83 -13.03 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 22 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 23 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 C 0.12 4.50 5.92 86.51 0.51 5.01 16 28 C -0.12 -3.14 8.76 22.27 0.20 -2.94 16 29 C -0.13 -2.99 9.70 22.27 0.22 -2.78 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 34 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.16 1.24 7.54 -2.91 -0.02 1.22 16 37 H 0.04 1.10 7.14 -2.39 -0.02 1.08 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.12 1.47 4.37 -2.39 -0.01 1.46 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.37 20.90 7.80 -92.71 -0.72 20.18 16 47 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 48 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 49 H 0.06 2.52 7.03 -2.39 -0.02 2.50 16 50 H 0.10 2.96 7.56 -2.91 -0.02 2.93 16 51 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -75.21 403.33 3.89 -71.32 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.18 Total: 33.79 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 5.52 Total: -10.25 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -3.79 Total: -120.39 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.21 3.89 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000471596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.899 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds