Wall clock time and date at job start Tue Mar 31 2020 16:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47415 * 2 1 4 4 C 1.38230 * 120.00076 * 89.99771 * 3 2 1 5 5 C 1.38239 * 120.00119 * 180.02562 * 4 3 2 6 6 C 1.38238 * 119.99742 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00047 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47256 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47289 * 240.00117 * 7 6 5 10 10 C 1.50697 * 109.47189 * 119.99822 * 7 6 5 11 11 O 1.21288 * 120.00000 * 96.59751 * 10 7 6 12 12 N 1.34778 * 120.00266 * 276.59794 * 10 7 6 13 13 C 1.46921 * 120.62861 * 355.57950 * 12 10 7 14 14 C 1.53196 * 108.77209 * 233.58473 * 13 12 10 15 15 C 1.53045 * 109.31303 * 305.36129 * 14 13 12 16 16 C 1.53039 * 109.53388 * 61.36827 * 15 14 13 17 17 H 1.08999 * 109.52984 * 58.60131 * 16 15 14 18 18 N 1.46505 * 109.49906 * 178.67988 * 16 15 14 19 19 C 1.36930 * 120.00224 * 274.84193 * 18 16 15 20 20 H 1.08000 * 119.99839 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00340 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99438 * 359.72720 * 21 19 18 23 23 Si 1.86791 * 120.00212 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47322 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47192 * 120.00339 * 23 21 19 26 26 H 1.48494 * 109.47478 * 240.00376 * 23 21 19 27 27 C 1.46930 * 120.63039 * 175.55036 * 12 10 7 28 28 C 1.38238 * 119.99884 * 0.25203 * 6 5 4 29 29 C 1.38231 * 120.00078 * 359.49428 * 28 6 5 30 30 H 1.08994 * 109.47454 * 59.99539 * 1 2 3 31 31 H 1.08996 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47049 * 300.00229 * 1 2 3 33 33 H 1.08997 * 109.47555 * 239.99725 * 2 1 3 34 34 H 1.09002 * 109.47608 * 119.99859 * 2 1 3 35 35 H 1.07999 * 120.00376 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00564 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47176 * 184.90234 * 9 7 6 38 38 H 1.09002 * 109.46805 * 304.89969 * 9 7 6 39 39 H 1.08997 * 109.47016 * 64.90189 * 9 7 6 40 40 H 1.08992 * 109.58879 * 353.36816 * 13 12 10 41 41 H 1.08999 * 109.58785 * 113.79906 * 13 12 10 42 42 H 1.08990 * 109.49914 * 65.31619 * 14 13 12 43 43 H 1.09006 * 109.49546 * 185.41857 * 14 13 12 44 44 H 1.08992 * 109.46252 * 301.34953 * 15 14 13 45 45 H 1.08997 * 109.45697 * 181.38604 * 15 14 13 46 46 H 0.97002 * 119.99810 * 94.83370 * 18 16 15 47 47 H 0.97000 * 119.99536 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.58693 * 6.63192 * 27 12 10 49 49 H 1.08991 * 109.70466 * 246.27143 * 27 12 10 50 50 H 1.08006 * 119.99890 * 179.72672 * 28 6 5 51 51 H 1.08001 * 120.00004 * 180.22982 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7231 3.3760 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4538 5.4490 -0.0002 8 1 3.5755 5.7915 1.0275 9 6 2.4451 6.3457 -0.7209 10 6 4.7810 5.5135 -0.7110 11 8 4.8278 5.8320 -1.8804 12 7 5.9161 5.2173 -0.0474 13 6 5.8868 4.9241 1.3919 14 6 6.8886 5.8400 2.1021 15 6 8.2668 5.6802 1.4560 16 6 8.1931 6.0940 -0.0156 17 1 7.8547 7.1276 -0.0869 18 7 9.5196 5.9707 -0.6252 19 6 10.4191 6.9978 -0.5210 20 1 10.1506 7.8990 0.0102 21 6 11.6762 6.8808 -1.0982 22 7 12.0052 5.7804 -1.7410 23 14 12.9030 8.2822 -0.9567 24 1 12.2953 9.3962 -0.1851 25 1 14.1225 7.8038 -0.2572 26 1 13.2668 8.7608 -2.3145 27 6 7.2061 5.1809 -0.7498 28 6 2.7167 3.3781 -1.1972 29 6 2.2613 2.0730 -1.1972 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5633 2.1324 36 1 2.9027 3.8853 2.1323 37 1 2.8469 7.3560 -0.7976 38 1 2.2582 5.9521 -1.7201 39 1 1.5117 6.3676 -0.1585 40 1 4.8854 5.1062 1.7817 41 1 6.1622 3.8827 1.5584 42 1 6.5622 6.8759 2.0114 43 1 6.9472 5.5674 3.1559 44 1 8.5818 4.6391 1.5251 45 1 8.9868 6.3125 1.9754 46 1 9.7606 5.1614 -1.1026 47 1 12.8837 5.6985 -2.1440 48 1 7.0750 5.5325 -1.7732 49 1 7.5902 4.1610 -0.7602 50 1 2.8917 3.8890 -2.1326 51 1 2.0806 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000471598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:44 Heat of formation + Delta-G solvation = -16.626979 kcal Electronic energy + Delta-G solvation = -28614.459336 eV Core-core repulsion = 24898.999659 eV Total energy + Delta-G solvation = -3715.459677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61383 -39.29102 -37.39774 -35.32054 -34.42856 -32.74111 -32.09492 -31.23226 -31.08365 -28.75167 -28.39957 -25.72681 -24.65793 -23.91238 -23.00777 -22.64610 -22.01289 -20.98722 -19.83127 -18.63556 -17.29274 -17.18874 -16.69992 -15.75649 -15.63625 -15.27132 -14.87111 -14.52823 -14.08451 -14.05780 -13.99057 -13.92235 -13.68547 -13.49050 -13.39115 -13.23822 -12.90778 -12.69756 -12.67545 -12.39919 -12.27018 -11.92751 -11.83686 -11.62302 -11.41409 -11.12043 -11.01359 -10.92683 -10.90920 -10.89191 -10.58943 -10.39764 -10.32643 -10.04521 -9.74923 -9.58314 -9.08109 -8.91202 -8.65405 -8.36071 -6.98173 -5.77385 -3.06803 1.09947 1.24209 2.76338 3.13389 3.43329 3.49041 3.51153 3.55847 4.43292 4.48615 4.56996 4.59133 4.65370 4.73419 4.83424 4.90941 5.01185 5.04785 5.14647 5.20637 5.23166 5.29516 5.31765 5.37181 5.54370 5.56129 5.57802 5.62187 5.64803 5.70279 5.77021 5.77614 5.81758 5.83460 5.90139 5.92028 6.05567 6.08205 6.17334 6.24455 6.26780 6.40240 6.42305 6.43338 6.56255 6.73070 6.81785 6.89236 7.05742 7.61458 7.70171 8.33863 8.40934 9.51823 10.07379 10.42504 11.45231 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002482 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.920976 B =11279.937626 C =11461.634821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.077 4.077 7 C -0.072 4.072 8 H 0.099 0.901 9 C -0.129 4.129 10 C 0.521 3.479 11 O -0.539 6.539 12 N -0.601 5.601 13 C 0.107 3.893 14 C -0.134 4.134 15 C -0.137 4.137 16 C 0.169 3.831 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.106 3.894 28 C -0.101 4.101 29 C -0.115 4.115 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.126 0.874 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.972 -9.040 8.595 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.077 4.077 7 C -0.094 4.094 8 H 0.117 0.883 9 C -0.187 4.187 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.334 5.334 13 C -0.015 4.015 14 C -0.173 4.173 15 C -0.177 4.177 16 C 0.058 3.942 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.017 4.017 28 C -0.119 4.119 29 C -0.133 4.133 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.144 0.856 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.827 -8.704 7.976 27.491 hybrid contribution 1.023 0.430 0.079 1.112 sum -23.804 -8.274 8.054 26.457 Atomic orbital electron populations 1.21742 0.94743 1.01638 1.02212 1.20548 0.96135 0.92738 1.02900 1.19909 0.99033 0.96193 0.93243 1.20951 1.00351 0.94733 0.97484 1.21010 0.99691 0.94868 0.97129 1.19429 1.00310 0.94282 0.93686 1.20354 0.93430 0.93953 1.01620 0.88301 1.21649 0.97206 0.99012 1.00822 1.20368 0.85104 0.76575 0.87127 1.90692 1.86773 1.47562 1.16571 1.48074 1.07337 1.68531 1.09434 1.21819 1.00019 0.99549 0.80160 1.21953 0.96634 0.99661 0.99044 1.22276 0.94695 1.01778 0.98998 1.20472 0.86354 0.96801 0.90574 0.93228 1.42322 1.09830 1.19560 1.64518 1.19249 0.93335 0.95572 1.28667 0.91118 1.24754 0.97867 0.97575 1.00746 1.69674 1.21214 1.26279 1.40816 0.86114 0.81378 0.81438 0.77237 1.20561 1.21883 1.21831 1.21986 0.81618 1.00337 0.97717 1.21112 0.98048 0.94692 0.98087 1.21010 1.00006 0.94689 0.97591 0.92549 0.92456 0.92584 0.91035 0.91048 0.86104 0.85949 0.91778 0.91391 0.91973 0.90327 0.91438 0.91855 0.91342 0.92498 0.91571 0.78215 0.93525 0.88967 0.91810 0.85560 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.15 0.37 -0.52 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.08 -0.76 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 5 C -0.11 -0.99 9.39 -39.58 -0.37 -1.36 16 6 C -0.08 -0.82 4.76 -104.62 -0.50 -1.32 16 7 C -0.07 -0.81 2.11 -92.93 -0.20 -1.01 16 8 H 0.10 0.90 5.88 -51.93 -0.31 0.60 16 9 C -0.13 -1.36 8.50 37.16 0.32 -1.05 16 10 C 0.52 7.98 6.45 -10.99 -0.07 7.91 16 11 O -0.54 -10.25 15.59 5.55 0.09 -10.16 16 12 N -0.60 -9.10 2.97 -172.77 -0.51 -9.61 16 13 C 0.11 1.27 6.31 -3.71 -0.02 1.25 16 14 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 15 C -0.14 -2.35 5.47 -26.69 -0.15 -2.50 16 16 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 17 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 18 N -0.72 -18.21 5.12 -53.31 -0.27 -18.48 16 19 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C 0.11 1.94 5.91 -3.71 -0.02 1.92 16 28 C -0.10 -1.16 8.77 -39.58 -0.35 -1.51 16 29 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.85 7.79 -52.49 -0.41 0.44 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.78 7.11 -51.93 -0.37 0.41 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.72 4.96 -51.93 -0.26 0.46 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.38 10.28 7.80 -40.82 -0.32 9.97 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.13 1.56 7.53 -52.48 -0.40 1.17 16 51 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -32.44 404.34 -10.70 -43.13 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.72 Total: 8.13 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.07 Total: -9.09 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.06 Total: -55.66 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.44 -10.70 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000471598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.506 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds