Wall clock time and date at job start Tue Mar 31 2020 16:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47415 * 2 1 4 4 C 1.38230 * 120.00076 * 89.99771 * 3 2 1 5 5 C 1.38239 * 120.00119 * 180.02562 * 4 3 2 6 6 C 1.38238 * 119.99742 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00047 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47256 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47289 * 240.00117 * 7 6 5 10 10 C 1.50697 * 109.47189 * 119.99822 * 7 6 5 11 11 O 1.21288 * 120.00000 * 96.59751 * 10 7 6 12 12 N 1.34778 * 120.00266 * 276.59794 * 10 7 6 13 13 C 1.46921 * 120.62861 * 355.57950 * 12 10 7 14 14 C 1.53196 * 108.77209 * 233.58473 * 13 12 10 15 15 C 1.53045 * 109.31303 * 305.36129 * 14 13 12 16 16 C 1.53039 * 109.53388 * 61.36827 * 15 14 13 17 17 H 1.08999 * 109.52984 * 58.60131 * 16 15 14 18 18 N 1.46505 * 109.49906 * 178.67988 * 16 15 14 19 19 C 1.36930 * 120.00224 * 274.84193 * 18 16 15 20 20 H 1.08000 * 119.99839 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00340 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99438 * 359.72720 * 21 19 18 23 23 Si 1.86791 * 120.00212 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47322 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47192 * 120.00339 * 23 21 19 26 26 H 1.48494 * 109.47478 * 240.00376 * 23 21 19 27 27 C 1.46930 * 120.63039 * 175.55036 * 12 10 7 28 28 C 1.38238 * 119.99884 * 0.25203 * 6 5 4 29 29 C 1.38231 * 120.00078 * 359.49428 * 28 6 5 30 30 H 1.08994 * 109.47454 * 59.99539 * 1 2 3 31 31 H 1.08996 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47049 * 300.00229 * 1 2 3 33 33 H 1.08997 * 109.47555 * 239.99725 * 2 1 3 34 34 H 1.09002 * 109.47608 * 119.99859 * 2 1 3 35 35 H 1.07999 * 120.00376 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00564 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47176 * 184.90234 * 9 7 6 38 38 H 1.09002 * 109.46805 * 304.89969 * 9 7 6 39 39 H 1.08997 * 109.47016 * 64.90189 * 9 7 6 40 40 H 1.08992 * 109.58879 * 353.36816 * 13 12 10 41 41 H 1.08999 * 109.58785 * 113.79906 * 13 12 10 42 42 H 1.08990 * 109.49914 * 65.31619 * 14 13 12 43 43 H 1.09006 * 109.49546 * 185.41857 * 14 13 12 44 44 H 1.08992 * 109.46252 * 301.34953 * 15 14 13 45 45 H 1.08997 * 109.45697 * 181.38604 * 15 14 13 46 46 H 0.97002 * 119.99810 * 94.83370 * 18 16 15 47 47 H 0.97000 * 119.99536 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.58693 * 6.63192 * 27 12 10 49 49 H 1.08991 * 109.70466 * 246.27143 * 27 12 10 50 50 H 1.08006 * 119.99890 * 179.72672 * 28 6 5 51 51 H 1.08001 * 120.00004 * 180.22982 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7231 3.3760 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4538 5.4490 -0.0002 8 1 3.5755 5.7915 1.0275 9 6 2.4451 6.3457 -0.7209 10 6 4.7810 5.5135 -0.7110 11 8 4.8278 5.8320 -1.8804 12 7 5.9161 5.2173 -0.0474 13 6 5.8868 4.9241 1.3919 14 6 6.8886 5.8400 2.1021 15 6 8.2668 5.6802 1.4560 16 6 8.1931 6.0940 -0.0156 17 1 7.8547 7.1276 -0.0869 18 7 9.5196 5.9707 -0.6252 19 6 10.4191 6.9978 -0.5210 20 1 10.1506 7.8990 0.0102 21 6 11.6762 6.8808 -1.0982 22 7 12.0052 5.7804 -1.7410 23 14 12.9030 8.2822 -0.9567 24 1 12.2953 9.3962 -0.1851 25 1 14.1225 7.8038 -0.2572 26 1 13.2668 8.7608 -2.3145 27 6 7.2061 5.1809 -0.7498 28 6 2.7167 3.3781 -1.1972 29 6 2.2613 2.0730 -1.1972 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0831 1.5633 2.1324 36 1 2.9027 3.8853 2.1323 37 1 2.8469 7.3560 -0.7976 38 1 2.2582 5.9521 -1.7201 39 1 1.5117 6.3676 -0.1585 40 1 4.8854 5.1062 1.7817 41 1 6.1622 3.8827 1.5584 42 1 6.5622 6.8759 2.0114 43 1 6.9472 5.5674 3.1559 44 1 8.5818 4.6391 1.5251 45 1 8.9868 6.3125 1.9754 46 1 9.7606 5.1614 -1.1026 47 1 12.8837 5.6985 -2.1440 48 1 7.0750 5.5325 -1.7732 49 1 7.5902 4.1610 -0.7602 50 1 2.8917 3.8890 -2.1326 51 1 2.0806 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000471598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:43 Heat of formation + Delta-G solvation = -34.384429 kcal Electronic energy + Delta-G solvation = -28615.229356 eV Core-core repulsion = 24898.999659 eV Total energy + Delta-G solvation = -3716.229698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68459 -40.19183 -38.76319 -36.31222 -35.99225 -33.88712 -33.32744 -32.76240 -31.83077 -30.15738 -29.41853 -26.89728 -26.07025 -25.20691 -23.84291 -23.55093 -23.35374 -21.83515 -21.16038 -19.85037 -19.15337 -18.41356 -17.57413 -16.97995 -16.63971 -16.39556 -16.06943 -15.91221 -15.44767 -15.24051 -15.22026 -14.77994 -14.67309 -14.59880 -14.54854 -14.33835 -14.02131 -13.86173 -13.68290 -13.36734 -13.24478 -12.97942 -12.92305 -12.80180 -12.56676 -12.35691 -12.30727 -12.19778 -12.12016 -11.95535 -11.84813 -11.76015 -11.69785 -11.64793 -11.51011 -10.94172 -10.79774 -9.80210 -9.68238 -9.41644 -9.05326 -7.97763 -5.27487 0.36037 0.52100 1.44520 1.46034 1.55737 1.58766 1.93839 2.54296 2.81502 3.35132 3.52967 3.68212 3.73318 3.84893 3.96162 4.01397 4.06075 4.06883 4.10012 4.16333 4.24646 4.34207 4.35743 4.40303 4.53790 4.58300 4.60902 4.69815 4.73305 4.75908 4.80443 4.85259 4.87088 4.93939 5.06507 5.08097 5.11851 5.14403 5.16365 5.21956 5.26362 5.38870 5.40705 5.41767 5.50319 5.53631 5.57980 5.67442 5.75677 6.12013 6.23901 6.43513 7.13872 7.29503 8.02104 8.26656 9.25858 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002482 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.920976 B =11279.937626 C =11461.634821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.088 4.088 7 C -0.060 4.060 8 H 0.132 0.868 9 C -0.128 4.128 10 C 0.514 3.486 11 O -0.588 6.588 12 N -0.601 5.601 13 C 0.104 3.896 14 C -0.124 4.124 15 C -0.128 4.128 16 C 0.168 3.832 17 H 0.031 0.969 18 N -0.736 5.736 19 C -0.237 4.237 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.119 3.881 28 C -0.123 4.123 29 C -0.129 4.129 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.372 0.628 47 H 0.251 0.749 48 H 0.058 0.942 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.972 -9.489 12.294 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.089 4.089 7 C -0.081 4.081 8 H 0.150 0.850 9 C -0.186 4.186 10 C 0.303 3.697 11 O -0.468 6.468 12 N -0.333 5.333 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.168 4.168 16 C 0.059 3.941 17 H 0.049 0.951 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.217 1.217 26 H -0.222 1.222 27 C -0.005 4.005 28 C -0.141 4.141 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.165 0.835 36 H 0.173 0.827 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.119 0.881 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.882 -9.145 11.734 30.724 hybrid contribution 1.551 0.517 -1.101 1.970 sum -25.331 -8.628 10.634 28.796 Atomic orbital electron populations 1.21721 0.94034 1.02357 1.01961 1.20597 0.96675 0.91540 1.03492 1.20203 0.98237 0.97120 0.93031 1.21317 0.99322 0.94748 0.98225 1.21329 0.98405 0.94943 0.97380 1.19414 1.01385 0.93967 0.94128 1.20357 0.90466 0.94767 1.02479 0.85033 1.21654 0.98346 0.98222 1.00365 1.21266 0.86445 0.75158 0.86785 1.90670 1.87539 1.49585 1.18981 1.48174 1.05859 1.68315 1.10958 1.22135 1.01971 1.00019 0.77562 1.21917 0.93448 1.00196 1.00705 1.22067 0.97569 1.00976 0.96191 1.20628 0.84450 0.96294 0.92721 0.95080 1.42512 1.11412 1.18594 1.65102 1.19581 0.93801 0.96017 1.27505 0.90824 1.25583 0.99896 1.00129 1.01249 1.69829 1.21466 1.28312 1.42361 0.85065 0.78872 0.78861 0.76920 1.19036 1.21725 1.22223 1.21533 0.83224 0.99494 0.96241 1.21077 0.99647 0.95530 0.97846 1.21134 1.00531 0.94418 0.98629 0.93354 0.91288 0.92274 0.91175 0.89766 0.83462 0.82741 0.92638 0.93350 0.89135 0.86416 0.90217 0.91746 0.87621 0.92674 0.93407 0.79578 0.93980 0.92378 0.91800 0.88052 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.09 -1.00 6.06 29.85 0.18 -0.82 16 3 C -0.09 -1.37 5.13 -19.86 -0.10 -1.47 16 4 C -0.12 -1.59 9.70 22.27 0.22 -1.38 16 5 C -0.10 -1.42 9.39 22.27 0.21 -1.22 16 6 C -0.09 -1.71 4.76 -19.87 -0.09 -1.81 16 7 C -0.06 -1.22 2.11 -12.29 -0.03 -1.24 16 8 H 0.13 1.77 5.88 -2.39 -0.01 1.75 16 9 C -0.13 -2.59 8.50 71.98 0.61 -1.98 16 10 C 0.51 15.68 6.45 87.66 0.57 16.24 16 11 O -0.59 -23.59 15.59 -3.05 -0.05 -23.64 16 12 N -0.60 -17.69 2.97 -818.91 -2.43 -20.13 16 13 C 0.10 2.08 6.31 86.36 0.54 2.62 16 14 C -0.12 -2.73 6.08 30.67 0.19 -2.54 16 15 C -0.13 -4.27 5.47 30.62 0.17 -4.10 16 16 C 0.17 6.96 2.92 45.07 0.13 7.09 16 17 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 18 N -0.74 -38.50 5.12 -322.56 -1.65 -40.15 16 19 C -0.24 -13.51 9.93 84.04 0.83 -12.68 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 22 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 23 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 27 C 0.12 4.52 5.91 86.36 0.51 5.03 16 28 C -0.12 -2.84 8.77 22.27 0.20 -2.64 16 29 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 34 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 35 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 1.12 7.79 -2.91 -0.02 1.10 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.16 7.11 -2.39 -0.02 1.14 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 1.47 4.96 -2.39 -0.01 1.46 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.37 20.89 7.80 -92.71 -0.72 20.17 16 47 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 48 H 0.06 2.58 7.00 -2.39 -0.02 2.57 16 49 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.10 2.77 7.53 -2.91 -0.02 2.74 16 51 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -74.87 404.34 3.88 -70.98 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.18 Total: 32.01 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.53 Total: -7.95 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -3.80 Total: -120.54 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.87 3.88 -70.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000471598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.599 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds