Wall clock time and date at job start Tue Mar 31 2020 16:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47189 * 2 1 4 4 C 1.38239 * 119.99518 * 90.00150 * 3 2 1 5 5 C 1.38238 * 119.99707 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99946 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47149 * 90.00337 * 7 6 5 9 9 C 1.50705 * 109.46814 * 180.02562 * 8 7 6 10 10 O 1.21271 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99400 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.63278 * 0.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 126.46534 * 12 11 9 14 14 C 1.53044 * 109.31440 * 54.56430 * 13 12 11 15 15 C 1.53040 * 109.53662 * 298.63203 * 14 13 12 16 16 H 1.08996 * 109.49892 * 301.41776 * 15 14 13 17 17 N 1.46492 * 109.49822 * 181.31643 * 15 14 13 18 18 C 1.36932 * 120.00317 * 155.00064 * 17 15 14 19 19 H 1.08003 * 119.99642 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00464 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99936 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00331 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46969 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47273 * 119.99866 * 22 20 18 25 25 H 1.48495 * 109.47074 * 240.00175 * 22 20 18 26 26 C 1.46957 * 120.64915 * 179.81885 * 11 9 8 27 27 C 1.38235 * 120.00396 * 0.27726 * 6 5 4 28 28 C 1.38232 * 120.00495 * 269.98330 * 3 2 1 29 29 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47365 * 299.99616 * 1 2 3 31 31 H 1.08996 * 109.47456 * 59.99276 * 1 2 3 32 32 H 1.09007 * 109.47087 * 240.00784 * 2 1 3 33 33 H 1.08996 * 109.47456 * 120.00724 * 2 1 3 34 34 H 1.07993 * 120.00322 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.99796 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46725 * 329.99690 * 7 6 5 37 37 H 1.09004 * 109.46901 * 210.00180 * 7 6 5 38 38 H 1.08994 * 109.47206 * 59.99711 * 8 7 6 39 39 H 1.09004 * 109.47091 * 299.99727 * 8 7 6 40 40 H 1.09002 * 109.58861 * 6.60537 * 12 11 9 41 41 H 1.08996 * 109.58519 * 246.32428 * 12 11 9 42 42 H 1.09003 * 109.49294 * 174.51508 * 13 12 11 43 43 H 1.08997 * 109.50161 * 294.61021 * 13 12 11 44 44 H 1.08994 * 109.45986 * 58.65006 * 14 13 12 45 45 H 1.09001 * 109.45959 * 178.62334 * 14 13 12 46 46 H 0.97006 * 120.00121 * 334.99810 * 17 15 14 47 47 H 0.97004 * 119.99847 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.46843 * 113.75181 * 26 11 9 49 49 H 1.08997 * 109.71602 * 353.46674 * 26 11 9 50 50 H 1.07993 * 120.00745 * 179.72735 * 27 6 5 51 51 H 1.08004 * 119.99872 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9554 4.0268 0.0002 7 6 3.4589 5.4473 0.0002 8 6 4.9889 5.4461 0.0008 9 6 5.4923 6.8666 0.0014 10 8 4.7049 7.7889 0.0010 11 7 6.8176 7.1118 0.0025 12 6 7.7837 6.0048 0.0025 13 6 8.7597 6.1983 -1.1623 14 6 9.3952 7.5871 -1.0648 15 6 8.3054 8.6569 -1.1650 16 1 7.7718 8.5453 -2.1088 17 7 8.9180 9.9862 -1.1031 18 6 8.2805 11.0606 -1.6639 19 1 7.3260 10.9280 -2.1514 20 6 8.8612 12.3201 -1.6057 21 7 10.0242 12.4817 -1.0111 22 14 7.9912 13.7859 -2.3700 23 1 6.7083 13.3416 -2.9716 24 1 7.7212 14.8028 -1.3222 25 1 8.8529 14.3782 -3.4244 26 6 7.3243 8.4912 -0.0008 27 6 2.7201 3.3771 -1.1970 28 6 2.2631 2.0724 -1.1971 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5634 2.1325 35 1 2.9044 3.8844 2.1326 36 1 3.0955 5.9615 0.8900 37 1 3.0963 5.9613 -0.8900 38 1 5.3521 4.9319 -0.8890 39 1 5.3515 4.9321 0.8910 40 1 7.2555 5.0588 -0.1166 41 1 8.3340 6.0001 0.9433 42 1 9.5387 5.4375 -1.1144 43 1 8.2218 6.1099 -2.1062 44 1 9.9121 7.6837 -0.1101 45 1 10.1084 7.7181 -1.8787 46 1 9.7751 10.1053 -0.6649 47 1 10.4301 13.3618 -0.9708 48 1 7.8368 8.6923 0.9400 49 1 6.4943 9.1875 -0.1207 50 1 2.8966 3.8874 -2.1323 51 1 2.0837 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000900773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:22 Heat of formation + Delta-G solvation = -24.893743 kcal Electronic energy + Delta-G solvation = -27497.080853 eV Core-core repulsion = 23781.262702 eV Total energy + Delta-G solvation = -3715.818151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.13919 -39.58365 -37.37179 -35.34350 -34.46840 -32.74751 -32.21257 -31.15536 -31.14963 -29.31853 -28.09681 -25.80393 -24.42599 -23.89609 -22.96023 -22.62883 -21.87851 -20.70471 -20.05525 -18.63964 -17.18633 -17.08287 -16.18462 -16.13385 -15.62197 -15.36332 -15.23678 -14.71779 -14.24075 -14.11677 -14.08552 -13.89434 -13.66065 -13.52890 -13.37726 -13.34036 -13.15914 -12.66263 -12.45183 -12.40535 -12.21588 -12.01428 -11.72655 -11.66273 -11.31789 -11.23131 -11.05416 -11.00438 -10.95088 -10.84873 -10.65131 -10.57156 -10.16737 -9.81308 -9.74832 -9.50526 -9.14230 -9.06728 -8.71023 -8.31194 -6.99154 -5.78412 -3.08079 1.08921 1.18290 2.86191 3.23244 3.44794 3.51173 3.52813 3.53987 4.38445 4.50178 4.52569 4.58810 4.76819 4.78371 4.88128 4.90514 4.98120 5.01725 5.06691 5.10514 5.17033 5.25804 5.28595 5.29185 5.41340 5.49598 5.51364 5.56463 5.58530 5.67613 5.69623 5.75520 5.79924 5.84678 5.90980 5.94130 6.04414 6.07614 6.17353 6.20687 6.22308 6.35742 6.37144 6.46677 6.50731 6.75816 6.79432 6.84335 7.02677 7.70845 7.72796 8.39182 8.44694 9.51714 10.05850 10.41090 11.43915 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.002010 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.736529 B =13924.845470 C =14569.322760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.066 4.066 8 C -0.132 4.132 9 C 0.508 3.492 10 O -0.543 6.543 11 N -0.608 5.608 12 C 0.107 3.893 13 C -0.130 4.130 14 C -0.126 4.126 15 C 0.169 3.831 16 H 0.050 0.950 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.092 3.908 27 C -0.113 4.113 28 C -0.116 4.116 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -27.844 3.375 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.104 4.104 8 C -0.172 4.172 9 C 0.296 3.704 10 O -0.421 6.421 11 N -0.342 5.342 12 C -0.016 4.016 13 C -0.169 4.169 14 C -0.165 4.165 15 C 0.057 3.943 16 H 0.068 0.932 17 N -0.359 5.359 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.033 4.033 27 C -0.131 4.131 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.108 0.892 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.113 -27.192 3.277 30.366 hybrid contribution 0.016 0.904 -0.179 0.921 sum -13.097 -26.289 3.098 29.533 Atomic orbital electron populations 1.21749 0.94776 1.01627 1.02276 1.20535 0.96156 0.92780 1.02732 1.19881 0.99612 0.96239 0.93280 1.20999 1.00131 0.94908 0.97434 1.21073 0.99589 0.94749 0.97729 1.19947 0.98985 0.96103 0.93170 1.20354 0.93474 0.91958 1.04627 1.21662 0.96578 0.94742 1.04177 1.20622 0.82160 0.91267 0.76391 1.90703 1.54810 1.46470 1.50074 1.48316 1.05098 1.08202 1.72539 1.21724 0.91326 0.89445 0.99142 1.21883 0.98431 0.98137 0.98436 1.21824 0.98765 0.93618 1.02250 1.20477 0.92057 0.86141 0.95593 0.93207 1.42380 1.23572 1.02022 1.67939 1.19322 1.02262 0.86843 1.28812 0.91000 1.24746 0.97144 0.97632 1.01217 1.69673 1.17341 1.22518 1.48501 0.86116 0.78708 0.82955 0.78461 1.20429 1.21795 1.21856 1.22748 0.99493 0.80491 1.00534 1.21090 0.99485 0.94733 0.97778 1.21006 1.00088 0.94886 0.97453 0.92469 0.92560 0.92549 0.91132 0.91148 0.86305 0.86033 0.90179 0.90109 0.89009 0.89137 0.90277 0.91500 0.91031 0.91616 0.92056 0.91435 0.78087 0.93534 0.92239 0.89181 0.85967 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.08 -0.50 6.06 -27.88 -0.17 -0.67 16 3 C -0.09 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 5 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 6 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 7 C -0.07 -0.72 4.63 -27.88 -0.13 -0.85 16 8 C -0.13 -1.40 4.03 -27.88 -0.11 -1.51 16 9 C 0.51 7.84 7.70 -10.98 -0.08 7.76 16 10 O -0.54 -10.74 15.40 5.56 0.09 -10.65 16 11 N -0.61 -9.24 2.98 -172.77 -0.51 -9.75 16 12 C 0.11 1.20 6.34 -3.71 -0.02 1.17 16 13 C -0.13 -1.52 6.08 -26.61 -0.16 -1.69 16 14 C -0.13 -1.97 5.35 -26.69 -0.14 -2.12 16 15 C 0.17 3.36 2.92 -67.83 -0.20 3.16 16 16 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 17 N -0.72 -17.96 5.12 -53.34 -0.27 -18.23 16 18 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 19 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 22 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.09 1.76 6.01 -3.71 -0.02 1.73 16 27 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 28 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 38 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 39 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.09 2.03 7.02 -51.93 -0.36 1.66 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 51 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 409.33 15.07 6.17 6.17 Total: -1.00 -32.83 409.33 -11.31 -44.14 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.94 Total: 6.85 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.53 Total: -8.90 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.06 Total: -55.42 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.83 -11.31 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000900773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.245 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds