Wall clock time and date at job start Tue Mar 31 2020 16:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47189 * 2 1 4 4 C 1.38239 * 119.99518 * 90.00150 * 3 2 1 5 5 C 1.38238 * 119.99707 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99946 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47149 * 90.00337 * 7 6 5 9 9 C 1.50705 * 109.46814 * 180.02562 * 8 7 6 10 10 O 1.21271 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99400 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.63278 * 0.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 126.46534 * 12 11 9 14 14 C 1.53044 * 109.31440 * 54.56430 * 13 12 11 15 15 C 1.53040 * 109.53662 * 298.63203 * 14 13 12 16 16 H 1.08996 * 109.49892 * 301.41776 * 15 14 13 17 17 N 1.46492 * 109.49822 * 181.31643 * 15 14 13 18 18 C 1.36932 * 120.00317 * 155.00064 * 17 15 14 19 19 H 1.08003 * 119.99642 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00464 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99936 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00331 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46969 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47273 * 119.99866 * 22 20 18 25 25 H 1.48495 * 109.47074 * 240.00175 * 22 20 18 26 26 C 1.46957 * 120.64915 * 179.81885 * 11 9 8 27 27 C 1.38235 * 120.00396 * 0.27726 * 6 5 4 28 28 C 1.38232 * 120.00495 * 269.98330 * 3 2 1 29 29 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47365 * 299.99616 * 1 2 3 31 31 H 1.08996 * 109.47456 * 59.99276 * 1 2 3 32 32 H 1.09007 * 109.47087 * 240.00784 * 2 1 3 33 33 H 1.08996 * 109.47456 * 120.00724 * 2 1 3 34 34 H 1.07993 * 120.00322 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.99796 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46725 * 329.99690 * 7 6 5 37 37 H 1.09004 * 109.46901 * 210.00180 * 7 6 5 38 38 H 1.08994 * 109.47206 * 59.99711 * 8 7 6 39 39 H 1.09004 * 109.47091 * 299.99727 * 8 7 6 40 40 H 1.09002 * 109.58861 * 6.60537 * 12 11 9 41 41 H 1.08996 * 109.58519 * 246.32428 * 12 11 9 42 42 H 1.09003 * 109.49294 * 174.51508 * 13 12 11 43 43 H 1.08997 * 109.50161 * 294.61021 * 13 12 11 44 44 H 1.08994 * 109.45986 * 58.65006 * 14 13 12 45 45 H 1.09001 * 109.45959 * 178.62334 * 14 13 12 46 46 H 0.97006 * 120.00121 * 334.99810 * 17 15 14 47 47 H 0.97004 * 119.99847 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.46843 * 113.75181 * 26 11 9 49 49 H 1.08997 * 109.71602 * 353.46674 * 26 11 9 50 50 H 1.07993 * 120.00745 * 179.72735 * 27 6 5 51 51 H 1.08004 * 119.99872 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9554 4.0268 0.0002 7 6 3.4589 5.4473 0.0002 8 6 4.9889 5.4461 0.0008 9 6 5.4923 6.8666 0.0014 10 8 4.7049 7.7889 0.0010 11 7 6.8176 7.1118 0.0025 12 6 7.7837 6.0048 0.0025 13 6 8.7597 6.1983 -1.1623 14 6 9.3952 7.5871 -1.0648 15 6 8.3054 8.6569 -1.1650 16 1 7.7718 8.5453 -2.1088 17 7 8.9180 9.9862 -1.1031 18 6 8.2805 11.0606 -1.6639 19 1 7.3260 10.9280 -2.1514 20 6 8.8612 12.3201 -1.6057 21 7 10.0242 12.4817 -1.0111 22 14 7.9912 13.7859 -2.3700 23 1 6.7083 13.3416 -2.9716 24 1 7.7212 14.8028 -1.3222 25 1 8.8529 14.3782 -3.4244 26 6 7.3243 8.4912 -0.0008 27 6 2.7201 3.3771 -1.1970 28 6 2.2631 2.0724 -1.1971 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5634 2.1325 35 1 2.9044 3.8844 2.1326 36 1 3.0955 5.9615 0.8900 37 1 3.0963 5.9613 -0.8900 38 1 5.3521 4.9319 -0.8890 39 1 5.3515 4.9321 0.8910 40 1 7.2555 5.0588 -0.1166 41 1 8.3340 6.0001 0.9433 42 1 9.5387 5.4375 -1.1144 43 1 8.2218 6.1099 -2.1062 44 1 9.9121 7.6837 -0.1101 45 1 10.1084 7.7181 -1.8787 46 1 9.7751 10.1053 -0.6649 47 1 10.4301 13.3618 -0.9708 48 1 7.8368 8.6923 0.9400 49 1 6.4943 9.1875 -0.1207 50 1 2.8966 3.8874 -2.1323 51 1 2.0837 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000900773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:21 Heat of formation + Delta-G solvation = -42.637541 kcal Electronic energy + Delta-G solvation = -27497.850282 eV Core-core repulsion = 23781.262702 eV Total energy + Delta-G solvation = -3716.587580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27624 -40.34343 -38.74209 -36.21824 -36.02857 -34.00363 -33.30825 -32.71794 -31.76612 -30.45225 -29.40565 -26.86752 -25.89220 -25.24442 -23.57905 -23.38923 -23.21282 -21.63847 -21.19355 -19.87829 -19.13154 -18.29656 -17.05625 -16.90255 -16.79431 -16.64623 -16.22350 -15.94170 -15.57410 -15.46367 -15.27545 -14.86427 -14.67771 -14.45446 -14.37895 -14.11656 -14.06022 -13.93729 -13.66760 -13.55823 -13.29248 -13.05317 -12.94068 -12.66738 -12.51722 -12.35902 -12.28478 -12.18602 -11.99266 -11.90015 -11.86084 -11.66376 -11.62543 -11.58617 -11.34881 -11.13516 -10.78423 -9.77193 -9.72385 -9.36719 -9.02452 -8.00902 -5.30019 0.44273 0.55370 1.42224 1.43522 1.53581 1.65376 2.04522 2.51651 2.87092 3.32323 3.50218 3.75826 3.90554 3.90859 4.00389 4.04926 4.08028 4.14539 4.17060 4.21418 4.32534 4.35769 4.39159 4.39663 4.54764 4.56923 4.64910 4.67628 4.68087 4.74805 4.78624 4.88630 4.92381 4.96290 5.06008 5.09905 5.11858 5.12053 5.15027 5.25894 5.28401 5.38517 5.41316 5.42464 5.47049 5.58029 5.59698 5.78091 5.79105 6.17434 6.22168 6.51157 7.21829 7.28581 8.01115 8.26209 9.21912 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.002010 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.736529 B =13924.845470 C =14569.322760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.121 4.121 6 C -0.092 4.092 7 C -0.060 4.060 8 C -0.116 4.116 9 C 0.500 3.500 10 O -0.597 6.597 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.119 4.119 15 C 0.167 3.833 16 H 0.030 0.970 17 N -0.730 5.730 18 C -0.245 4.245 19 H 0.064 0.936 20 C -0.068 4.068 21 N -0.963 5.963 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.107 3.893 27 C -0.122 4.122 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.377 0.623 47 H 0.253 0.747 48 H 0.055 0.945 49 H 0.045 0.955 50 H 0.126 0.874 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -31.396 3.461 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.092 4.092 7 C -0.098 4.098 8 C -0.156 4.156 9 C 0.291 3.709 10 O -0.478 6.478 11 N -0.340 5.340 12 C -0.020 4.020 13 C -0.160 4.160 14 C -0.157 4.157 15 C 0.057 3.943 16 H 0.048 0.952 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.082 0.918 20 C -0.261 4.261 21 N -0.613 5.613 22 Si 0.797 3.203 23 H -0.199 1.199 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.019 4.019 27 C -0.140 4.140 28 C -0.141 4.141 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.210 0.790 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.144 0.856 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.303 -30.819 3.358 33.735 hybrid contribution 0.017 1.922 -0.197 1.932 sum -13.286 -28.896 3.161 31.961 Atomic orbital electron populations 1.21741 0.94557 1.02297 1.01747 1.20578 0.96249 0.91628 1.03632 1.20182 0.98808 0.97199 0.93086 1.21242 0.99734 0.94705 0.98358 1.21223 0.99667 0.95226 0.97770 1.19819 1.00258 0.95268 0.93850 1.20222 0.93779 0.92731 1.03096 1.21663 0.96212 0.91169 1.06535 1.21565 0.81621 0.92857 0.74888 1.90681 1.56176 1.48583 1.52390 1.48381 1.06079 1.07438 1.72121 1.22110 0.90859 0.89281 0.99744 1.21879 0.99358 0.96114 0.98643 1.21743 0.97172 0.94553 1.02229 1.20648 0.93444 0.85404 0.94777 0.95156 1.42520 1.23344 1.03372 1.67773 1.19548 1.01897 0.88121 1.28094 0.91771 1.25484 0.98082 1.00099 1.02422 1.69798 1.18634 1.22833 1.50077 0.85155 0.77855 0.79687 0.77575 1.19854 1.21837 1.21357 1.22153 0.97482 0.82609 0.99698 1.21223 0.99754 0.95258 0.97802 1.21233 0.99803 0.94671 0.98390 0.91232 0.93049 0.93131 0.90305 0.90214 0.84677 0.85317 0.91614 0.91907 0.86568 0.86308 0.86290 0.89889 0.87112 0.91727 0.91591 0.92139 0.79028 0.93817 0.92704 0.93608 0.85563 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 71.98 0.71 -0.59 16 2 C -0.08 -0.77 6.06 29.85 0.18 -0.59 16 3 C -0.09 -1.26 5.13 -19.86 -0.10 -1.36 16 4 C -0.12 -1.73 9.70 22.27 0.22 -1.51 16 5 C -0.12 -1.95 9.70 22.27 0.22 -1.73 16 6 C -0.09 -1.65 5.13 -19.87 -0.10 -1.75 16 7 C -0.06 -1.28 4.63 29.85 0.14 -1.14 16 8 C -0.12 -2.21 4.03 29.85 0.12 -2.09 16 9 C 0.50 15.26 7.70 87.66 0.67 15.94 16 10 O -0.60 -24.66 15.40 -3.00 -0.05 -24.71 16 11 N -0.61 -17.89 2.98 -818.90 -2.44 -20.34 16 12 C 0.10 1.88 6.34 86.36 0.55 2.43 16 13 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 14 C -0.12 -3.57 5.35 30.62 0.16 -3.40 16 15 C 0.17 6.81 2.92 45.06 0.13 6.94 16 16 H 0.03 1.34 8.08 -2.39 -0.02 1.33 16 17 N -0.73 -37.77 5.12 -322.65 -1.65 -39.42 16 18 C -0.24 -14.23 9.93 84.03 0.83 -13.40 16 19 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 21 N -0.96 -59.51 13.06 21.65 0.28 -59.23 16 22 Si 0.97 48.01 29.55 68.60 2.03 50.04 16 23 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 C 0.11 4.21 6.01 86.34 0.52 4.73 16 27 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 28 C -0.12 -1.79 9.70 22.27 0.22 -1.57 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.61 8.09 -2.38 -0.02 0.59 16 33 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 37 H 0.06 1.53 8.04 -2.38 -0.02 1.51 16 38 H 0.12 1.71 7.69 -2.39 -0.02 1.69 16 39 H 0.12 1.65 7.94 -2.38 -0.02 1.63 16 40 H 0.12 1.35 5.93 -2.39 -0.01 1.34 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.38 20.44 7.80 -92.70 -0.72 19.72 16 47 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 49 H 0.05 2.20 7.02 -2.39 -0.02 2.18 16 50 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 51 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -75.29 409.33 3.68 -71.61 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.17 Total: 28.76 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.34 Total: -6.72 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.81 Total: -118.99 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -75.29 3.68 -71.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000900773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds