Wall clock time and date at job start Tue Mar 31 2020 16:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47254 * 2 1 4 4 C 1.38242 * 119.99720 * 90.00057 * 3 2 1 5 5 C 1.38229 * 119.99695 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00016 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47246 * 90.00017 * 7 6 5 9 9 C 1.50693 * 109.47314 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99881 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00404 * 180.02562 * 9 8 7 12 12 C 1.46927 * 120.62515 * 359.97438 * 11 9 8 13 13 C 1.53198 * 108.77277 * 233.62878 * 12 11 9 14 14 C 1.53031 * 109.31411 * 305.36441 * 13 12 11 15 15 C 1.53048 * 109.53889 * 61.36755 * 14 13 12 16 16 H 1.08993 * 109.52521 * 58.59755 * 15 14 13 17 17 N 1.46494 * 109.49956 * 178.68745 * 15 14 13 18 18 C 1.36945 * 119.99612 * 204.83910 * 17 15 14 19 19 H 1.07999 * 120.00077 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99637 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99539 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46712 * 90.00052 * 22 20 18 24 24 H 1.48499 * 109.46916 * 209.99467 * 22 20 18 25 25 H 1.48492 * 109.46909 * 330.00070 * 22 20 18 26 26 C 1.46917 * 120.63404 * 180.02562 * 11 9 8 27 27 C 1.38229 * 120.00264 * 0.25448 * 6 5 4 28 28 C 1.38234 * 120.00201 * 269.97904 * 3 2 1 29 29 H 1.08995 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46602 * 299.99811 * 1 2 3 31 31 H 1.09000 * 109.46863 * 60.00274 * 1 2 3 32 32 H 1.09004 * 109.47427 * 239.99961 * 2 1 3 33 33 H 1.09000 * 109.47551 * 120.00021 * 2 1 3 34 34 H 1.07994 * 119.99862 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.99911 * 179.97438 * 5 4 3 36 36 H 1.08995 * 109.47186 * 329.99847 * 7 6 5 37 37 H 1.08999 * 109.47194 * 210.00202 * 7 6 5 38 38 H 1.09008 * 109.46912 * 59.99872 * 8 7 6 39 39 H 1.08999 * 109.47175 * 300.00196 * 8 7 6 40 40 H 1.09000 * 109.58921 * 353.41704 * 12 11 9 41 41 H 1.09006 * 109.58806 * 113.84455 * 12 11 9 42 42 H 1.09002 * 109.49477 * 65.32029 * 13 12 11 43 43 H 1.09006 * 109.49259 * 185.38053 * 13 12 11 44 44 H 1.09001 * 109.46178 * 301.34734 * 14 13 12 45 45 H 1.08997 * 109.46373 * 181.38621 * 14 13 12 46 46 H 0.96995 * 120.00290 * 25.10801 * 17 15 14 47 47 H 0.97005 * 119.99727 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.58514 * 6.57863 * 26 11 9 49 49 H 1.09004 * 109.70511 * 246.22815 * 26 11 9 50 50 H 1.08000 * 120.00627 * 179.72727 * 27 6 5 51 51 H 1.08001 * 119.99965 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9545 4.0271 0.0001 7 6 3.4569 5.4480 0.0002 8 6 4.9868 5.4480 0.0002 9 6 5.4892 6.8687 -0.0004 10 8 4.7011 7.7906 -0.0003 11 7 6.8143 7.1151 -0.0010 12 6 7.7812 6.0088 -0.0006 13 6 8.7537 6.2045 1.1669 14 6 9.3881 7.5937 1.0697 15 6 8.2969 8.6626 1.1657 16 1 7.7606 8.5520 2.1081 17 7 8.9083 9.9924 1.1041 18 6 8.2665 11.0674 1.6591 19 1 7.3095 10.9348 2.1418 20 6 8.8460 12.3274 1.6012 21 7 8.2294 13.3605 2.1351 22 14 10.5016 12.5566 0.7669 23 1 10.2931 12.8591 -0.6719 24 1 11.2279 13.6816 1.4090 25 1 11.2997 11.3116 0.9005 26 6 7.3193 8.4947 -0.0011 27 6 2.7186 3.3776 -1.1970 28 6 2.2632 2.0723 -1.1971 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0824 1.5634 2.1325 35 1 2.9037 3.8847 2.1326 36 1 3.0935 5.9618 0.8901 37 1 3.0935 5.9619 -0.8898 38 1 5.3502 4.9341 -0.8899 39 1 5.3502 4.9341 0.8901 40 1 7.2537 5.0624 0.1180 41 1 8.3340 6.0062 -0.9401 42 1 8.2131 6.1164 2.1093 43 1 9.5334 5.4440 1.1222 44 1 9.9077 7.6899 0.1163 45 1 10.0989 7.7263 1.8853 46 1 9.7657 10.1123 0.6669 47 1 8.6342 14.2411 2.0943 48 1 6.4869 9.1885 0.1171 49 1 7.8336 8.6979 -0.9404 50 1 2.8944 3.8882 -2.1323 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000900776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:24 Heat of formation + Delta-G solvation = -39.839890 kcal Electronic energy + Delta-G solvation = -27535.681270 eV Core-core repulsion = 23819.215006 eV Total energy + Delta-G solvation = -3716.466264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29865 -40.35269 -38.81078 -36.32067 -36.03665 -34.06811 -33.34121 -32.90383 -31.77061 -30.76987 -29.54471 -26.87418 -25.72721 -25.19474 -23.58299 -23.36774 -23.11414 -21.78751 -21.22709 -19.97531 -19.50513 -18.30235 -17.04710 -16.92097 -16.80890 -16.62143 -16.29801 -15.94617 -15.80252 -15.45475 -15.05534 -14.81999 -14.72456 -14.46590 -14.42427 -14.21423 -14.08018 -14.04265 -13.83378 -13.59167 -13.39574 -13.14607 -12.99162 -12.67028 -12.57543 -12.36203 -12.29050 -12.09348 -11.93572 -11.87914 -11.85013 -11.75324 -11.62921 -11.58962 -11.38078 -11.15383 -10.79973 -9.81828 -9.77510 -9.37356 -9.25443 -8.06030 -5.42318 0.43802 0.54940 1.35203 1.40887 1.48170 1.64462 2.03505 2.45826 2.86582 3.24581 3.47877 3.54230 3.89270 3.90177 3.97291 4.03670 4.05629 4.11522 4.13992 4.20322 4.26263 4.33398 4.36437 4.38798 4.54230 4.55829 4.64511 4.66912 4.67319 4.74073 4.76971 4.86395 4.92883 4.95642 5.03599 5.09644 5.11180 5.11844 5.14317 5.25354 5.27998 5.36254 5.41182 5.44818 5.52412 5.57638 5.73221 5.77669 5.78708 6.16970 6.17721 6.49382 7.02914 7.21692 7.75933 7.98070 9.15759 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027797 B = 0.001989 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.043726 B =14070.771969 C =14507.132443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.092 4.092 7 C -0.061 4.061 8 C -0.115 4.115 9 C 0.499 3.501 10 O -0.598 6.598 11 N -0.608 5.608 12 C 0.100 3.900 13 C -0.123 4.123 14 C -0.121 4.121 15 C 0.169 3.831 16 H 0.028 0.972 17 N -0.744 5.744 18 C -0.239 4.239 19 H 0.043 0.957 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.243 1.243 26 C 0.104 3.896 27 C -0.120 4.120 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.370 0.630 47 H 0.259 0.741 48 H 0.040 0.960 49 H 0.066 0.934 50 H 0.129 0.871 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -34.441 -7.455 35.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.099 4.099 8 C -0.155 4.155 9 C 0.289 3.711 10 O -0.479 6.479 11 N -0.341 5.341 12 C -0.021 4.021 13 C -0.162 4.162 14 C -0.160 4.160 15 C 0.060 3.940 16 H 0.046 0.954 17 N -0.387 5.387 18 C -0.370 4.370 19 H 0.061 0.939 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.167 1.167 26 C -0.022 4.022 27 C -0.138 4.138 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.204 0.796 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.147 0.853 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.976 -33.854 -7.325 35.333 hybrid contribution 0.473 1.652 -0.097 1.721 sum -6.503 -32.201 -7.423 33.680 Atomic orbital electron populations 1.21743 0.94578 1.02302 1.01736 1.20578 0.96230 0.91609 1.03653 1.20184 0.98782 0.97216 0.93071 1.21229 0.99773 0.94670 0.98414 1.21217 0.99795 0.95291 0.97785 1.19810 1.00298 0.95201 0.93878 1.20224 0.93919 0.92763 1.03018 1.21655 0.96127 0.91105 1.06584 1.21594 0.81732 0.92850 0.74886 1.90703 1.56240 1.48705 1.52294 1.48356 1.06065 1.07442 1.72218 1.22157 0.90807 0.89184 0.99932 1.21889 0.99472 0.96272 0.98525 1.21797 0.97000 0.94196 1.02967 1.20639 0.93731 0.84632 0.95008 0.95354 1.42650 1.22781 1.04283 1.69025 1.18956 1.01820 0.87493 1.28692 0.93896 1.25639 1.03209 0.94889 1.01940 1.69925 1.41576 0.99915 1.52063 0.85284 0.79496 0.78199 0.77995 1.20428 1.22101 1.16730 1.22120 0.97572 0.82674 0.99843 1.21223 0.99666 0.95209 0.97735 1.21245 0.99723 0.94656 0.98364 0.91215 0.93165 0.93046 0.90157 0.90309 0.84835 0.85683 0.92129 0.91615 0.86099 0.86599 0.86460 0.89368 0.92059 0.86781 0.90534 0.91481 0.79565 0.93239 0.94098 0.91597 0.85261 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.08 -0.77 6.06 29.85 0.18 -0.59 16 3 C -0.09 -1.26 5.13 -19.86 -0.10 -1.37 16 4 C -0.12 -1.81 9.70 22.27 0.22 -1.60 16 5 C -0.12 -2.09 9.70 22.27 0.22 -1.88 16 6 C -0.09 -1.67 5.13 -19.87 -0.10 -1.77 16 7 C -0.06 -1.33 4.63 29.85 0.14 -1.19 16 8 C -0.12 -2.19 4.03 29.84 0.12 -2.07 16 9 C 0.50 15.27 7.70 87.65 0.67 15.95 16 10 O -0.60 -25.32 15.39 -3.03 -0.05 -25.37 16 11 N -0.61 -17.33 2.97 -818.99 -2.43 -19.76 16 12 C 0.10 1.68 6.34 86.36 0.55 2.23 16 13 C -0.12 -2.18 6.08 30.67 0.19 -1.99 16 14 C -0.12 -3.20 5.35 30.62 0.16 -3.03 16 15 C 0.17 6.55 2.92 45.06 0.13 6.68 16 16 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 17 N -0.74 -35.35 4.93 -322.64 -1.59 -36.94 16 18 C -0.24 -14.26 10.41 84.03 0.87 -13.38 16 19 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.98 -65.41 13.97 21.65 0.30 -65.11 16 22 Si 0.96 45.89 27.73 68.60 1.90 47.79 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.24 -10.12 6.52 99.48 0.65 -9.47 16 26 C 0.10 3.94 6.01 86.35 0.52 4.46 16 27 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 28 C -0.12 -1.72 9.70 22.27 0.22 -1.50 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.60 8.09 -2.38 -0.02 0.58 16 33 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.06 1.53 8.04 -2.39 -0.02 1.52 16 37 H 0.07 1.58 8.04 -2.39 -0.02 1.57 16 38 H 0.12 1.62 7.94 -2.38 -0.02 1.61 16 39 H 0.12 1.71 7.69 -2.39 -0.02 1.69 16 40 H 0.12 1.19 5.93 -2.39 -0.01 1.18 16 41 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.37 16.30 5.67 -92.71 -0.53 15.77 16 47 H 0.26 16.26 8.31 -92.70 -0.77 15.48 16 48 H 0.04 1.98 7.00 -2.39 -0.02 1.96 16 49 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 50 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 51 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -81.70 406.20 3.82 -77.88 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.31 Total: 28.41 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.38 Total: -6.89 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -3.72 Total: -121.81 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -81.70 3.82 -77.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000900776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.037 kcal (2) G-P(sol) polarization free energy of solvation -81.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds