Wall clock time and date at job start Tue Mar 31 2020 16:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46935 * 2 1 4 4 C 1.38376 * 119.85839 * 264.99834 * 3 2 1 5 5 C 1.37938 * 120.14956 * 179.97438 * 4 3 2 6 6 C 1.39594 * 119.84907 * 359.97438 * 5 4 3 7 7 C 1.47847 * 120.14374 * 180.02562 * 6 5 4 8 8 O 1.21557 * 120.00159 * 129.43868 * 7 6 5 9 9 N 1.34769 * 119.99872 * 309.44379 * 7 6 5 10 10 C 1.46927 * 120.63030 * 183.78564 * 9 7 6 11 11 C 1.53190 * 108.77604 * 126.37013 * 10 9 7 12 12 C 1.53042 * 109.31509 * 54.63354 * 11 10 9 13 13 C 1.53038 * 109.53848 * 298.63939 * 12 11 10 14 14 H 1.08997 * 109.49799 * 301.37833 * 13 12 11 15 15 N 1.46501 * 109.49743 * 181.31223 * 13 12 11 16 16 C 1.36942 * 119.99530 * 154.99739 * 15 13 12 17 17 H 1.07996 * 120.00547 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99671 * 180.02562 * 16 15 13 19 19 N 1.31613 * 120.00000 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99778 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47040 * 90.00531 * 20 18 16 22 22 H 1.48506 * 109.47088 * 209.99842 * 20 18 16 23 23 H 1.48498 * 109.47502 * 330.00117 * 20 18 16 24 24 C 1.46923 * 120.63396 * 3.50851 * 9 7 6 25 25 C 1.39562 * 119.71337 * 359.97438 * 6 5 4 26 26 C 1.37977 * 119.85039 * 359.77819 * 25 6 5 27 27 C 1.50702 * 119.92771 * 180.23055 * 26 25 6 28 28 C 1.53004 * 109.46879 * 265.25456 * 27 26 25 29 29 H 1.09002 * 109.47600 * 59.99608 * 1 2 3 30 30 H 1.09002 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47323 * 299.99651 * 1 2 3 32 32 H 1.08994 * 109.47038 * 120.00656 * 2 1 3 33 33 H 1.09000 * 109.46585 * 240.00855 * 2 1 3 34 34 H 1.08002 * 119.92734 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.07514 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.58769 * 246.15135 * 10 9 7 37 37 H 1.08998 * 109.58562 * 6.58355 * 10 9 7 38 38 H 1.08997 * 109.50241 * 174.58350 * 11 10 9 39 39 H 1.09001 * 109.50048 * 294.68280 * 11 10 9 40 40 H 1.09005 * 109.45847 * 58.65604 * 12 11 10 41 41 H 1.09000 * 109.46686 * 178.62902 * 12 11 10 42 42 H 0.96991 * 120.00201 * 334.99893 * 15 13 12 43 43 H 0.96996 * 120.00233 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.58067 * 353.41789 * 24 9 7 45 45 H 1.09004 * 109.59110 * 113.84185 * 24 9 7 46 46 H 1.08003 * 120.07225 * 180.02562 * 25 6 5 47 47 H 1.08998 * 109.47125 * 25.24457 * 27 26 25 48 48 H 1.08997 * 109.47593 * 145.25440 * 27 26 25 49 49 H 1.08996 * 109.46956 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.46635 * 299.99910 * 28 27 26 51 51 H 1.08997 * 109.47022 * 59.99634 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3605 2.0355 -1.1955 5 6 2.8203 3.3359 -1.2025 6 6 2.9537 4.0322 0.0000 7 6 3.4454 5.4266 0.0000 8 8 2.8285 6.2886 0.5949 9 7 4.5775 5.7418 -0.6597 10 6 5.1235 7.1046 -0.6008 11 6 6.5861 7.0308 -0.1512 12 6 7.3536 6.0857 -1.0785 13 6 6.7503 4.6820 -0.9920 14 1 6.7971 4.3287 0.0381 15 7 7.5052 3.7712 -1.8561 16 6 7.5187 2.4281 -1.5892 17 1 6.9726 2.0402 -0.7421 18 6 8.2346 1.5650 -2.4077 19 7 8.2472 0.2741 -2.1516 20 14 9.1787 2.2358 -3.8733 21 1 10.5597 2.5857 -3.4544 22 1 9.2316 1.2056 -4.9416 23 1 8.4954 3.4491 -4.3891 24 6 5.2926 4.7278 -1.4466 25 6 2.6199 3.4068 1.2021 26 6 2.1563 2.1073 1.1946 27 6 1.7903 1.4321 2.4913 28 6 2.9852 0.6229 2.9998 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8932 -0.5137 -0.8901 34 1 2.2565 1.4958 -2.1252 35 1 3.0766 3.8144 -2.1363 36 1 5.0675 7.5637 -1.5878 37 1 4.5512 7.6969 0.1131 38 1 7.0310 8.0248 -0.1957 39 1 6.6340 6.6557 0.8711 40 1 7.2846 6.4481 -2.1042 41 1 8.4001 6.0502 -0.7756 42 1 7.9955 4.1194 -2.6171 43 1 8.7476 -0.3289 -2.7232 44 1 4.8317 3.7524 -1.2905 45 1 5.2505 4.9891 -2.5040 46 1 2.7204 3.9403 2.1358 47 1 1.5216 2.1866 3.2306 48 1 0.9435 0.7657 2.3276 49 1 2.7204 0.1342 3.9373 50 1 3.2541 -0.1315 2.2604 51 1 3.8321 1.2893 3.1634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001092012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:27 Heat of formation + Delta-G solvation = -12.893343 kcal Electronic energy + Delta-G solvation = -29409.943499 eV Core-core repulsion = 25694.645725 eV Total energy + Delta-G solvation = -3715.297774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.49379 -39.12878 -37.36579 -34.76200 -34.43516 -33.41107 -32.43459 -31.47901 -29.88379 -29.24854 -28.58805 -25.65241 -24.34275 -24.04588 -23.41839 -21.80642 -21.48990 -21.10874 -20.13568 -18.88278 -17.60064 -16.94597 -16.32189 -15.89139 -15.60957 -15.07784 -14.69151 -14.50582 -14.22414 -14.09180 -13.84409 -13.74275 -13.57211 -13.43708 -13.25955 -13.03375 -12.66664 -12.61176 -12.50248 -12.44235 -12.33944 -11.87489 -11.77102 -11.40030 -11.30040 -11.21669 -11.12539 -10.95877 -10.77242 -10.72662 -10.60171 -10.52265 -10.32952 -10.05988 -9.65423 -9.61477 -9.14270 -8.69368 -8.46263 -8.34312 -7.35222 -5.83547 -3.20829 1.15516 1.51067 2.84999 3.19466 3.31614 3.34765 3.40741 3.85774 4.52253 4.58314 4.71862 4.83521 4.92908 4.98292 5.04488 5.10639 5.16576 5.21044 5.30426 5.33382 5.36522 5.41233 5.46017 5.49398 5.59762 5.61655 5.63706 5.68258 5.78461 5.81797 5.85649 5.88743 5.92410 5.96831 6.01471 6.06428 6.10549 6.15184 6.20582 6.21649 6.24331 6.34494 6.49083 6.50833 6.59102 6.69049 6.73479 6.81754 7.04659 7.59356 7.91870 8.31600 8.35803 9.12279 9.84423 10.03318 11.34230 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008840 B = 0.004758 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.661293 B = 5882.796417 C = 7998.168421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.058 4.058 4 C -0.114 4.114 5 C -0.083 4.083 6 C -0.125 4.125 7 C 0.563 3.437 8 O -0.551 6.551 9 N -0.600 5.600 10 C 0.112 3.888 11 C -0.129 4.129 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.059 0.941 15 N -0.743 5.743 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.882 3.118 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.076 3.924 25 C -0.067 4.067 26 C -0.086 4.086 27 C -0.085 4.085 28 C -0.150 4.150 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.124 0.876 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 5.414 4.919 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.058 4.058 4 C -0.132 4.132 5 C -0.102 4.102 6 C -0.128 4.128 7 C 0.352 3.648 8 O -0.430 6.430 9 N -0.332 5.332 10 C -0.011 4.011 11 C -0.167 4.167 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.077 0.923 15 N -0.385 5.385 16 C -0.377 4.377 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.577 5.577 20 Si 0.712 3.288 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.049 4.049 25 C -0.086 4.086 26 C -0.086 4.086 27 C -0.122 4.122 28 C -0.207 4.207 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.142 0.858 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.845 5.619 5.318 14.994 hybrid contribution 0.964 0.344 -1.356 1.699 sum -11.880 5.962 3.962 13.870 Atomic orbital electron populations 1.21759 0.94836 1.01589 1.02153 1.20650 0.95952 0.92776 1.03544 1.19853 0.97532 0.95907 0.92520 1.20947 0.99679 0.94684 0.97851 1.21233 0.97330 0.94534 0.97073 1.19733 1.04213 0.94078 0.94758 1.18435 0.80341 0.88011 0.78053 1.90728 1.57246 1.49865 1.45188 1.48158 1.24196 1.11560 1.49264 1.21588 0.94325 0.83316 1.01829 1.21869 0.94694 0.99932 1.00245 1.21875 0.99972 0.95610 0.99389 1.20367 0.88992 0.89042 0.95414 0.92256 1.42738 1.58748 1.04790 1.32219 1.19057 1.26657 0.81089 1.10924 0.89147 1.24655 1.00117 0.95152 0.98755 1.69695 1.45935 1.01668 1.40361 0.86598 0.80547 0.77996 0.83629 1.21054 1.21724 1.20319 1.23038 0.95518 0.91868 0.94465 1.20885 0.96847 0.94000 0.96826 1.19598 1.00393 0.93789 0.94855 1.20579 0.98794 0.99205 0.93623 1.21785 0.97905 1.00263 1.00750 0.92573 0.92426 0.92516 0.90389 0.90656 0.85479 0.85483 0.91683 0.89314 0.90910 0.91468 0.92154 0.91318 0.80434 0.93010 0.88256 0.91857 0.85756 0.91228 0.90670 0.92530 0.92096 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.71 37.16 0.36 -0.97 16 2 C -0.09 -1.00 5.37 -27.88 -0.15 -1.15 16 3 C -0.06 -0.77 5.14 -104.53 -0.54 -1.31 16 4 C -0.11 -1.61 9.66 -39.64 -0.38 -1.99 16 5 C -0.08 -1.26 7.37 -39.19 -0.29 -1.55 16 6 C -0.12 -2.01 5.00 -104.97 -0.52 -2.54 16 7 C 0.56 9.65 7.24 -12.33 -0.09 9.56 16 8 O -0.55 -10.63 16.47 5.32 0.09 -10.55 16 9 N -0.60 -9.45 2.98 -174.14 -0.52 -9.97 16 10 C 0.11 1.51 6.42 -3.71 -0.02 1.49 16 11 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 12 C -0.13 -1.93 5.36 -26.69 -0.14 -2.07 16 13 C 0.17 3.17 2.91 -68.03 -0.20 2.97 16 14 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 15 N -0.74 -16.53 4.93 -53.52 -0.26 -16.79 16 16 C -0.25 -6.63 10.41 -15.05 -0.16 -6.78 16 17 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 19 N -0.93 -28.14 13.97 55.49 0.78 -27.37 16 20 Si 0.88 21.24 27.73 -169.99 -4.71 16.52 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 24 C 0.08 1.28 4.92 -3.93 -0.02 1.26 16 25 C -0.07 -1.00 9.37 -39.18 -0.37 -1.37 16 26 C -0.09 -1.16 5.13 -104.68 -0.54 -1.69 16 27 C -0.08 -0.91 5.38 -27.88 -0.15 -1.06 16 28 C -0.15 -1.63 9.72 37.16 0.36 -1.27 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 32 H 0.08 0.81 5.61 -51.93 -0.29 0.52 16 33 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.13 1.82 7.07 -52.49 -0.37 1.44 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.23 7.02 -51.93 -0.36 0.86 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.10 1.82 4.56 -51.93 -0.24 1.59 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 47 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 48 H 0.07 0.70 5.57 -51.93 -0.29 0.41 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.70 6.78 -51.93 -0.35 0.35 16 51 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -31.45 394.62 -10.20 -41.65 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.41 Total: 10.64 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.10 Total: -10.08 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.01 Total: -54.13 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.45 -10.20 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001092012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.753 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds