Wall clock time and date at job start Tue Mar 31 2020 16:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46935 * 2 1 4 4 C 1.38376 * 119.85839 * 264.99834 * 3 2 1 5 5 C 1.37938 * 120.14956 * 179.97438 * 4 3 2 6 6 C 1.39594 * 119.84907 * 359.97438 * 5 4 3 7 7 C 1.47847 * 120.14374 * 180.02562 * 6 5 4 8 8 O 1.21557 * 120.00159 * 129.43868 * 7 6 5 9 9 N 1.34769 * 119.99872 * 309.44379 * 7 6 5 10 10 C 1.46927 * 120.63030 * 183.78564 * 9 7 6 11 11 C 1.53190 * 108.77604 * 126.37013 * 10 9 7 12 12 C 1.53042 * 109.31509 * 54.63354 * 11 10 9 13 13 C 1.53038 * 109.53848 * 298.63939 * 12 11 10 14 14 H 1.08997 * 109.49799 * 301.37833 * 13 12 11 15 15 N 1.46501 * 109.49743 * 181.31223 * 13 12 11 16 16 C 1.36942 * 119.99530 * 154.99739 * 15 13 12 17 17 H 1.07996 * 120.00547 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99671 * 180.02562 * 16 15 13 19 19 N 1.31613 * 120.00000 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99778 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47040 * 90.00531 * 20 18 16 22 22 H 1.48506 * 109.47088 * 209.99842 * 20 18 16 23 23 H 1.48498 * 109.47502 * 330.00117 * 20 18 16 24 24 C 1.46923 * 120.63396 * 3.50851 * 9 7 6 25 25 C 1.39562 * 119.71337 * 359.97438 * 6 5 4 26 26 C 1.37977 * 119.85039 * 359.77819 * 25 6 5 27 27 C 1.50702 * 119.92771 * 180.23055 * 26 25 6 28 28 C 1.53004 * 109.46879 * 265.25456 * 27 26 25 29 29 H 1.09002 * 109.47600 * 59.99608 * 1 2 3 30 30 H 1.09002 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47323 * 299.99651 * 1 2 3 32 32 H 1.08994 * 109.47038 * 120.00656 * 2 1 3 33 33 H 1.09000 * 109.46585 * 240.00855 * 2 1 3 34 34 H 1.08002 * 119.92734 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.07514 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.58769 * 246.15135 * 10 9 7 37 37 H 1.08998 * 109.58562 * 6.58355 * 10 9 7 38 38 H 1.08997 * 109.50241 * 174.58350 * 11 10 9 39 39 H 1.09001 * 109.50048 * 294.68280 * 11 10 9 40 40 H 1.09005 * 109.45847 * 58.65604 * 12 11 10 41 41 H 1.09000 * 109.46686 * 178.62902 * 12 11 10 42 42 H 0.96991 * 120.00201 * 334.99893 * 15 13 12 43 43 H 0.96996 * 120.00233 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.58067 * 353.41789 * 24 9 7 45 45 H 1.09004 * 109.59110 * 113.84185 * 24 9 7 46 46 H 1.08003 * 120.07225 * 180.02562 * 25 6 5 47 47 H 1.08998 * 109.47125 * 25.24457 * 27 26 25 48 48 H 1.08997 * 109.47593 * 145.25440 * 27 26 25 49 49 H 1.08996 * 109.46956 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.46635 * 299.99910 * 28 27 26 51 51 H 1.08997 * 109.47022 * 59.99634 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3605 2.0355 -1.1955 5 6 2.8203 3.3359 -1.2025 6 6 2.9537 4.0322 0.0000 7 6 3.4454 5.4266 0.0000 8 8 2.8285 6.2886 0.5949 9 7 4.5775 5.7418 -0.6597 10 6 5.1235 7.1046 -0.6008 11 6 6.5861 7.0308 -0.1512 12 6 7.3536 6.0857 -1.0785 13 6 6.7503 4.6820 -0.9920 14 1 6.7971 4.3287 0.0381 15 7 7.5052 3.7712 -1.8561 16 6 7.5187 2.4281 -1.5892 17 1 6.9726 2.0402 -0.7421 18 6 8.2346 1.5650 -2.4077 19 7 8.2472 0.2741 -2.1516 20 14 9.1787 2.2358 -3.8733 21 1 10.5597 2.5857 -3.4544 22 1 9.2316 1.2056 -4.9416 23 1 8.4954 3.4491 -4.3891 24 6 5.2926 4.7278 -1.4466 25 6 2.6199 3.4068 1.2021 26 6 2.1563 2.1073 1.1946 27 6 1.7903 1.4321 2.4913 28 6 2.9852 0.6229 2.9998 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8932 -0.5137 -0.8901 34 1 2.2565 1.4958 -2.1252 35 1 3.0766 3.8144 -2.1363 36 1 5.0675 7.5637 -1.5878 37 1 4.5512 7.6969 0.1131 38 1 7.0310 8.0248 -0.1957 39 1 6.6340 6.6557 0.8711 40 1 7.2846 6.4481 -2.1042 41 1 8.4001 6.0502 -0.7756 42 1 7.9955 4.1194 -2.6171 43 1 8.7476 -0.3289 -2.7232 44 1 4.8317 3.7524 -1.2905 45 1 5.2505 4.9891 -2.5040 46 1 2.7204 3.9403 2.1358 47 1 1.5216 2.1866 3.2306 48 1 0.9435 0.7657 2.3276 49 1 2.7204 0.1342 3.9373 50 1 3.2541 -0.1315 2.2604 51 1 3.8321 1.2893 3.1634 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001092012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:26 Heat of formation + Delta-G solvation = -29.690533 kcal Electronic energy + Delta-G solvation = -29410.671880 eV Core-core repulsion = 25694.645725 eV Total energy + Delta-G solvation = -3716.026155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74052 -40.28555 -38.78426 -36.15491 -35.81685 -34.36255 -33.90932 -33.16766 -30.93735 -30.58994 -29.92819 -26.85519 -25.71492 -25.34404 -24.65903 -23.03988 -22.54260 -22.46740 -21.43725 -20.17473 -19.52107 -18.20111 -17.55188 -17.03322 -16.71436 -16.68860 -16.24848 -15.72423 -15.60522 -15.43337 -14.99134 -14.83877 -14.78107 -14.58041 -14.50005 -14.25183 -14.11692 -13.89149 -13.87356 -13.51514 -13.32681 -13.23691 -12.96768 -12.85224 -12.55064 -12.48687 -12.16143 -12.14894 -12.07848 -11.94893 -11.85577 -11.73252 -11.71259 -11.49852 -11.45577 -11.14212 -10.86142 -9.93405 -9.78615 -9.52462 -9.22932 -7.99781 -5.35249 -0.01323 0.36869 1.40423 1.43610 1.50334 1.53898 1.94207 2.50202 2.70064 3.27346 3.32409 3.64443 3.73106 3.81719 3.85924 3.91139 3.99507 4.09255 4.13707 4.18668 4.27020 4.33625 4.39012 4.46346 4.51690 4.53939 4.57263 4.58117 4.66429 4.75529 4.82673 4.85791 4.88798 4.94703 4.98632 5.02975 5.06648 5.07684 5.08961 5.21181 5.31173 5.32559 5.32915 5.39901 5.42703 5.48030 5.50866 5.65974 5.77730 5.95217 6.21821 6.26801 6.99329 7.08821 7.81487 8.02998 9.21204 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008840 B = 0.004758 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.661293 B = 5882.796417 C = 7998.168421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.061 4.061 4 C -0.126 4.126 5 C -0.092 4.092 6 C -0.147 4.147 7 C 0.561 3.439 8 O -0.577 6.577 9 N -0.596 5.596 10 C 0.106 3.894 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.032 0.968 15 N -0.743 5.743 16 C -0.229 4.229 17 H 0.051 0.949 18 C -0.057 4.057 19 N -0.980 5.980 20 Si 0.952 3.048 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.247 1.247 24 C 0.088 3.912 25 C -0.082 4.082 26 C -0.089 4.089 27 C -0.082 4.082 28 C -0.148 4.148 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.369 0.631 43 H 0.257 0.743 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.743 6.824 4.111 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.062 4.062 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.150 4.150 7 C 0.351 3.649 8 O -0.459 6.459 9 N -0.327 5.327 10 C -0.015 4.015 11 C -0.157 4.157 12 C -0.161 4.161 13 C 0.059 3.941 14 H 0.050 0.950 15 N -0.386 5.386 16 C -0.360 4.360 17 H 0.069 0.931 18 C -0.248 4.248 19 N -0.630 5.630 20 Si 0.779 3.221 21 H -0.207 1.207 22 H -0.226 1.226 23 H -0.171 1.171 24 C -0.037 4.037 25 C -0.100 4.100 26 C -0.089 4.089 27 C -0.119 4.119 28 C -0.205 4.205 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.203 0.797 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.142 0.858 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.075 7.096 4.516 15.547 hybrid contribution 0.985 -0.121 -0.996 1.406 sum -12.090 6.976 3.520 14.395 Atomic orbital electron populations 1.21730 0.93084 1.02789 1.02228 1.20718 0.97378 0.90995 1.03820 1.20227 0.96612 0.97129 0.92192 1.21228 0.99689 0.94561 0.98957 1.21321 0.97740 0.95069 0.96917 1.19827 1.05556 0.94052 0.95588 1.18609 0.80479 0.88182 0.77674 1.90699 1.58120 1.50644 1.46406 1.48171 1.23658 1.12289 1.48576 1.21835 0.94631 0.81903 1.03136 1.21829 0.93856 1.01150 0.98870 1.21809 0.99967 0.93224 1.01077 1.20512 0.89772 0.90532 0.93244 0.94951 1.42654 1.59467 1.03464 1.33002 1.18909 1.24804 0.83206 1.09093 0.93052 1.25441 1.01874 0.95297 1.02231 1.69882 1.47713 1.03367 1.42040 0.85469 0.79093 0.78096 0.79442 1.20705 1.22585 1.17116 1.22714 0.94291 0.91617 0.95047 1.21059 0.97444 0.94939 0.96598 1.19925 0.99475 0.93255 0.96245 1.20638 0.99247 0.99583 0.92384 1.21772 0.97352 0.99758 1.01665 0.92849 0.90654 0.92111 0.89753 0.90778 0.84171 0.85171 0.89418 0.89576 0.87312 0.92630 0.90351 0.91156 0.79659 0.93415 0.90116 0.90619 0.85764 0.90260 0.88738 0.90200 0.92985 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.71 71.98 0.70 -1.62 16 2 C -0.09 -1.92 5.37 29.85 0.16 -1.76 16 3 C -0.06 -1.64 5.14 -19.81 -0.10 -1.74 16 4 C -0.13 -3.64 9.66 22.23 0.21 -3.43 16 5 C -0.09 -2.87 7.37 22.53 0.17 -2.70 16 6 C -0.15 -4.92 5.00 -20.09 -0.10 -5.02 16 7 C 0.56 19.55 7.24 86.79 0.63 20.18 16 8 O -0.58 -22.57 16.47 -3.90 -0.06 -22.63 16 9 N -0.60 -18.47 2.98 -823.14 -2.45 -20.92 16 10 C 0.11 2.64 6.42 86.36 0.55 3.20 16 11 C -0.12 -2.68 6.08 30.67 0.19 -2.49 16 12 C -0.12 -3.31 5.36 30.62 0.16 -3.15 16 13 C 0.17 6.10 2.91 44.92 0.13 6.23 16 14 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 15 N -0.74 -32.48 4.93 -323.25 -1.59 -34.07 16 16 C -0.23 -12.51 10.41 84.03 0.87 -11.64 16 17 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 18 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 19 N -0.98 -61.02 13.97 21.65 0.30 -60.72 16 20 Si 0.95 43.44 27.73 68.60 1.90 45.34 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.25 -9.92 6.52 99.48 0.65 -9.28 16 24 C 0.09 2.95 4.92 86.22 0.42 3.37 16 25 C -0.08 -2.54 9.37 22.53 0.21 -2.33 16 26 C -0.09 -2.40 5.13 -19.90 -0.10 -2.50 16 27 C -0.08 -1.67 5.38 29.85 0.16 -1.51 16 28 C -0.15 -3.15 9.72 71.98 0.70 -2.46 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.95 6.76 -2.38 -0.02 0.93 16 32 H 0.08 1.66 5.61 -2.39 -0.01 1.65 16 33 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.13 3.82 7.07 -2.91 -0.02 3.80 16 36 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.09 2.25 7.02 -2.39 -0.02 2.23 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.87 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.37 15.23 5.66 -92.71 -0.52 14.71 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.08 3.04 4.56 -2.38 -0.01 3.03 16 45 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 46 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 47 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 48 H 0.09 1.58 5.57 -2.39 -0.01 1.57 16 49 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.05 1.19 6.78 -2.39 -0.02 1.17 16 51 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -69.97 394.62 3.87 -66.10 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.34 Total: 39.02 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.44 Total: -12.11 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -3.74 Total: -115.72 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.34 kcal Total: -69.97 3.87 -66.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001092012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.408 kcal (2) G-P(sol) polarization free energy of solvation -69.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds