Wall clock time and date at job start Tue Mar 31 2020 16:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47101 * 2 1 4 4 C 1.38372 * 119.85408 * 264.99981 * 3 2 1 5 5 C 1.37940 * 120.14813 * 180.27542 * 4 3 2 6 6 C 1.39596 * 119.84773 * 359.47294 * 5 4 3 7 7 C 1.47849 * 120.14169 * 180.24475 * 6 5 4 8 8 O 1.21551 * 119.99674 * 129.50453 * 7 6 5 9 9 N 1.34774 * 120.00462 * 309.51120 * 7 6 5 10 10 C 1.46928 * 120.62721 * 3.51429 * 9 7 6 11 11 C 1.52766 * 109.00465 * 233.58713 * 10 9 7 12 12 C 1.53039 * 109.38489 * 305.58703 * 11 10 9 13 13 C 1.53040 * 109.53492 * 61.24403 * 12 11 10 14 14 H 1.09005 * 109.49652 * 58.58529 * 13 12 11 15 15 N 1.46502 * 109.52367 * 178.66770 * 13 12 11 16 16 C 1.36933 * 119.99916 * 204.85478 * 15 13 12 17 17 H 1.08007 * 120.00188 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00113 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00207 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46943 * 60.00192 * 20 18 16 22 22 H 1.48498 * 109.46910 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46871 * 300.00196 * 20 18 16 24 24 C 1.46927 * 120.63178 * 183.80081 * 9 7 6 25 25 C 1.39555 * 119.71167 * 0.54679 * 6 5 4 26 26 C 1.37979 * 119.85388 * 359.70870 * 25 6 5 27 27 C 1.50695 * 119.92736 * 180.02562 * 26 25 6 28 28 C 1.53004 * 109.47218 * 265.01790 * 27 26 25 29 29 H 1.08997 * 109.47097 * 59.99874 * 1 2 3 30 30 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47138 * 300.00181 * 1 2 3 32 32 H 1.08994 * 109.47043 * 240.00003 * 2 1 3 33 33 H 1.09005 * 109.46995 * 119.99521 * 2 1 3 34 34 H 1.08005 * 119.92757 * 359.97438 * 4 3 2 35 35 H 1.07992 * 120.07419 * 179.70487 * 5 4 3 36 36 H 1.09003 * 109.58966 * 353.42338 * 10 9 7 37 37 H 1.09002 * 109.58251 * 113.85141 * 10 9 7 38 38 H 1.09003 * 109.56001 * 185.55664 * 11 10 9 39 39 H 1.08995 * 109.38814 * 65.52199 * 11 10 9 40 40 H 1.08999 * 109.46047 * 301.22231 * 12 11 10 41 41 H 1.09003 * 109.45992 * 181.26362 * 12 11 10 42 42 H 0.96997 * 119.99905 * 24.84768 * 15 13 12 43 43 H 0.97001 * 120.00148 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58324 * 246.15053 * 24 9 7 45 45 H 1.08995 * 109.58444 * 6.57565 * 24 9 7 46 46 H 1.08002 * 120.07295 * 179.67917 * 25 6 5 47 47 H 1.09005 * 109.47618 * 25.01536 * 27 26 25 48 48 H 1.09000 * 109.47306 * 145.01756 * 27 26 25 49 49 H 1.08993 * 109.47345 * 180.02562 * 28 27 26 50 50 H 1.09005 * 109.46618 * 300.00358 * 28 27 26 51 51 H 1.09000 * 109.47010 * 59.99784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0354 -1.1955 5 6 2.8263 3.3338 -1.2021 6 6 2.9558 4.0315 0.0000 7 6 3.4492 5.4252 0.0000 8 8 2.8316 6.2885 0.5923 9 7 4.5836 5.7386 -0.6567 10 6 5.2996 4.7229 -1.4407 11 6 6.7559 4.6757 -0.9818 12 6 7.3613 6.0786 -1.0677 13 6 6.5923 7.0253 -0.1434 14 1 6.6368 6.6509 0.8794 15 7 7.1919 8.3608 -0.2017 16 6 7.0465 9.2232 0.8519 17 1 6.4895 8.9191 1.7258 18 6 7.6150 10.4883 0.7969 19 7 8.2935 10.8591 -0.2683 20 14 7.4161 11.6651 2.2339 21 1 8.0060 11.0596 3.4548 22 1 8.1111 12.9414 1.9284 23 1 5.9726 11.9300 2.4605 24 6 5.1312 7.1007 -0.5973 25 6 2.6234 3.4057 1.2023 26 6 2.1637 2.1048 1.1953 27 6 1.8038 1.4276 2.4925 28 6 3.0007 0.6169 2.9939 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2564 1.4956 -2.1252 35 1 3.0866 3.8106 -2.1354 36 1 4.8371 3.7482 -1.2852 37 1 5.2609 4.9835 -2.4984 38 1 7.3186 3.9968 -1.6225 39 1 6.7993 4.3232 0.0487 40 1 7.2957 6.4402 -2.0939 41 1 8.4070 6.0422 -0.7619 42 1 7.6920 8.6340 -0.9867 43 1 8.6905 11.7433 -0.3070 44 1 5.0785 7.5591 -1.5848 45 1 4.5576 7.6943 0.1145 46 1 2.7263 3.9383 2.1362 47 1 1.5389 2.1809 3.2345 48 1 0.9558 0.7619 2.3318 49 1 2.7403 0.1267 3.9319 50 1 3.2657 -0.1364 2.2519 51 1 3.8487 1.2826 3.1545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001092013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:30 Heat of formation + Delta-G solvation = -15.946412 kcal Electronic energy + Delta-G solvation = -28617.829838 eV Core-core repulsion = 24902.399673 eV Total energy + Delta-G solvation = -3715.430165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63014 -39.24787 -37.24189 -35.10103 -34.29301 -33.71651 -32.25529 -31.19334 -30.19066 -29.60574 -28.08045 -25.73888 -24.53435 -24.13390 -23.54216 -21.94502 -21.82756 -21.37663 -20.00978 -18.90338 -17.08425 -17.05551 -16.51680 -16.06167 -15.72510 -15.11749 -14.73137 -14.53947 -14.27488 -14.09382 -13.97124 -13.88661 -13.78967 -13.52986 -13.34680 -13.32319 -12.83256 -12.66045 -12.61913 -12.39451 -12.33367 -12.14027 -11.80120 -11.59842 -11.42725 -11.30219 -11.03773 -10.98963 -10.87055 -10.80784 -10.63263 -10.55288 -10.22435 -9.82821 -9.76857 -9.56430 -9.06382 -9.00075 -8.70931 -8.31898 -6.99277 -5.77695 -3.07528 0.87255 1.17407 2.82942 3.18266 3.46804 3.50442 3.52492 3.58695 4.38514 4.46158 4.53440 4.59482 4.64135 4.73144 4.91008 4.96062 5.00066 5.05769 5.11223 5.12687 5.19435 5.27727 5.29971 5.35100 5.47720 5.49599 5.53786 5.56579 5.61607 5.66724 5.68948 5.76858 5.81396 5.84321 5.89367 5.93223 6.02192 6.05994 6.16331 6.17598 6.22193 6.26089 6.36690 6.40855 6.50733 6.70827 6.77081 6.83961 7.02160 7.66356 7.72045 8.37032 8.41271 9.52224 10.06126 10.41614 11.44485 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019122 B = 0.002629 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.924800 B =10647.751904 C =11201.095580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.066 4.066 4 C -0.121 4.121 5 C -0.094 4.094 6 C -0.116 4.116 7 C 0.552 3.448 8 O -0.536 6.536 9 N -0.598 5.598 10 C 0.097 3.903 11 C -0.130 4.130 12 C -0.126 4.126 13 C 0.169 3.831 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.092 3.908 25 C -0.067 4.067 26 C -0.084 4.084 27 C -0.088 4.088 28 C -0.148 4.148 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -26.553 -2.242 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.066 4.066 4 C -0.139 4.139 5 C -0.112 4.112 6 C -0.119 4.119 7 C 0.340 3.660 8 O -0.414 6.414 9 N -0.331 5.331 10 C -0.025 4.025 11 C -0.169 4.169 12 C -0.164 4.164 13 C 0.058 3.942 14 H 0.068 0.932 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.211 1.211 24 C -0.032 4.032 25 C -0.086 4.086 26 C -0.084 4.084 27 C -0.125 4.125 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.146 0.854 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.129 -25.940 -1.769 28.690 hybrid contribution 0.149 0.968 0.321 1.031 sum -11.980 -24.971 -1.449 27.735 Atomic orbital electron populations 1.21767 0.94639 1.01717 1.02441 1.20633 0.96289 0.92644 1.03097 1.19860 0.98121 0.96110 0.92553 1.20926 1.00415 0.94915 0.97613 1.21275 0.98369 0.94394 0.97191 1.19951 1.03090 0.94322 0.94581 1.18404 0.80888 0.87752 0.78971 1.90798 1.56740 1.49513 1.44318 1.48215 1.23679 1.12336 1.48843 1.21944 0.93074 0.92304 0.95220 1.21807 0.94993 0.98105 1.01946 1.21827 1.00143 0.93959 1.00512 1.20484 0.89738 0.86990 0.97023 0.93180 1.42364 1.62403 1.10648 1.20420 1.19224 1.28162 0.94141 0.95873 0.91123 1.24745 1.00454 0.97704 0.97760 1.69651 1.39686 1.20345 1.28369 0.86263 0.77681 0.80398 0.81856 1.21210 1.21666 1.21098 1.22818 0.97591 0.80478 1.02299 1.21030 0.96375 0.93830 0.97328 1.19648 1.00006 0.93803 0.94907 1.20608 0.98782 0.99394 0.93758 1.21773 0.97991 1.00003 1.00782 0.92454 0.92358 0.92344 0.90997 0.90485 0.85611 0.85334 0.89350 0.91435 0.91006 0.91660 0.92029 0.91407 0.78054 0.93415 0.91947 0.89124 0.85379 0.90870 0.90559 0.92330 0.92468 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.72 37.16 0.36 -0.51 16 2 C -0.09 -0.57 5.38 -27.88 -0.15 -0.72 16 3 C -0.07 -0.58 5.14 -104.53 -0.54 -1.12 16 4 C -0.12 -1.07 9.66 -39.64 -0.38 -1.46 16 5 C -0.09 -1.00 7.37 -39.18 -0.29 -1.29 16 6 C -0.12 -1.57 5.00 -104.97 -0.53 -2.09 16 7 C 0.55 9.49 7.24 -12.33 -0.09 9.40 16 8 O -0.54 -11.47 16.47 5.32 0.09 -11.38 16 9 N -0.60 -9.64 2.98 -174.14 -0.52 -10.16 16 10 C 0.10 1.18 5.34 -3.93 -0.02 1.16 16 11 C -0.13 -1.61 6.06 -26.83 -0.16 -1.77 16 12 C -0.13 -2.01 5.36 -26.69 -0.14 -2.15 16 13 C 0.17 3.41 2.92 -67.81 -0.20 3.21 16 14 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 15 N -0.72 -18.03 5.13 -53.31 -0.27 -18.30 16 16 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 17 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 20 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.09 1.80 6.01 -3.71 -0.02 1.78 16 25 C -0.07 -0.83 9.37 -39.19 -0.37 -1.20 16 26 C -0.08 -0.83 5.13 -104.68 -0.54 -1.37 16 27 C -0.09 -0.69 5.38 -27.88 -0.15 -0.84 16 28 C -0.15 -1.04 9.72 37.16 0.36 -0.68 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 32 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 33 H 0.08 0.44 5.59 -51.93 -0.29 0.15 16 34 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.13 1.22 7.06 -52.49 -0.37 0.85 16 36 H 0.09 0.92 4.56 -51.93 -0.24 0.69 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.39 10.14 7.80 -40.82 -0.32 9.83 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.07 7.02 -51.93 -0.36 1.70 16 46 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 48 H 0.08 0.50 5.60 -51.93 -0.29 0.21 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -32.88 397.78 -10.56 -43.44 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.45 Total: 7.09 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.10 Total: -7.04 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.07 Total: -55.95 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.88 -10.56 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001092013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.491 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds