Wall clock time and date at job start Tue Mar 31 2020 16:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47101 * 2 1 4 4 C 1.38372 * 119.85408 * 264.99981 * 3 2 1 5 5 C 1.37940 * 120.14813 * 180.27542 * 4 3 2 6 6 C 1.39596 * 119.84773 * 359.47294 * 5 4 3 7 7 C 1.47849 * 120.14169 * 180.24475 * 6 5 4 8 8 O 1.21551 * 119.99674 * 129.50453 * 7 6 5 9 9 N 1.34774 * 120.00462 * 309.51120 * 7 6 5 10 10 C 1.46928 * 120.62721 * 3.51429 * 9 7 6 11 11 C 1.52766 * 109.00465 * 233.58713 * 10 9 7 12 12 C 1.53039 * 109.38489 * 305.58703 * 11 10 9 13 13 C 1.53040 * 109.53492 * 61.24403 * 12 11 10 14 14 H 1.09005 * 109.49652 * 58.58529 * 13 12 11 15 15 N 1.46502 * 109.52367 * 178.66770 * 13 12 11 16 16 C 1.36933 * 119.99916 * 204.85478 * 15 13 12 17 17 H 1.08007 * 120.00188 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00113 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00207 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46943 * 60.00192 * 20 18 16 22 22 H 1.48498 * 109.46910 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46871 * 300.00196 * 20 18 16 24 24 C 1.46927 * 120.63178 * 183.80081 * 9 7 6 25 25 C 1.39555 * 119.71167 * 0.54679 * 6 5 4 26 26 C 1.37979 * 119.85388 * 359.70870 * 25 6 5 27 27 C 1.50695 * 119.92736 * 180.02562 * 26 25 6 28 28 C 1.53004 * 109.47218 * 265.01790 * 27 26 25 29 29 H 1.08997 * 109.47097 * 59.99874 * 1 2 3 30 30 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47138 * 300.00181 * 1 2 3 32 32 H 1.08994 * 109.47043 * 240.00003 * 2 1 3 33 33 H 1.09005 * 109.46995 * 119.99521 * 2 1 3 34 34 H 1.08005 * 119.92757 * 359.97438 * 4 3 2 35 35 H 1.07992 * 120.07419 * 179.70487 * 5 4 3 36 36 H 1.09003 * 109.58966 * 353.42338 * 10 9 7 37 37 H 1.09002 * 109.58251 * 113.85141 * 10 9 7 38 38 H 1.09003 * 109.56001 * 185.55664 * 11 10 9 39 39 H 1.08995 * 109.38814 * 65.52199 * 11 10 9 40 40 H 1.08999 * 109.46047 * 301.22231 * 12 11 10 41 41 H 1.09003 * 109.45992 * 181.26362 * 12 11 10 42 42 H 0.96997 * 119.99905 * 24.84768 * 15 13 12 43 43 H 0.97001 * 120.00148 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58324 * 246.15053 * 24 9 7 45 45 H 1.08995 * 109.58444 * 6.57565 * 24 9 7 46 46 H 1.08002 * 120.07295 * 179.67917 * 25 6 5 47 47 H 1.09005 * 109.47618 * 25.01536 * 27 26 25 48 48 H 1.09000 * 109.47306 * 145.01756 * 27 26 25 49 49 H 1.08993 * 109.47345 * 180.02562 * 28 27 26 50 50 H 1.09005 * 109.46618 * 300.00358 * 28 27 26 51 51 H 1.09000 * 109.47010 * 59.99784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0354 -1.1955 5 6 2.8263 3.3338 -1.2021 6 6 2.9558 4.0315 0.0000 7 6 3.4492 5.4252 0.0000 8 8 2.8316 6.2885 0.5923 9 7 4.5836 5.7386 -0.6567 10 6 5.2996 4.7229 -1.4407 11 6 6.7559 4.6757 -0.9818 12 6 7.3613 6.0786 -1.0677 13 6 6.5923 7.0253 -0.1434 14 1 6.6368 6.6509 0.8794 15 7 7.1919 8.3608 -0.2017 16 6 7.0465 9.2232 0.8519 17 1 6.4895 8.9191 1.7258 18 6 7.6150 10.4883 0.7969 19 7 8.2935 10.8591 -0.2683 20 14 7.4161 11.6651 2.2339 21 1 8.0060 11.0596 3.4548 22 1 8.1111 12.9414 1.9284 23 1 5.9726 11.9300 2.4605 24 6 5.1312 7.1007 -0.5973 25 6 2.6234 3.4057 1.2023 26 6 2.1637 2.1048 1.1953 27 6 1.8038 1.4276 2.4925 28 6 3.0007 0.6169 2.9939 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2564 1.4956 -2.1252 35 1 3.0866 3.8106 -2.1354 36 1 4.8371 3.7482 -1.2852 37 1 5.2609 4.9835 -2.4984 38 1 7.3186 3.9968 -1.6225 39 1 6.7993 4.3232 0.0487 40 1 7.2957 6.4402 -2.0939 41 1 8.4070 6.0422 -0.7619 42 1 7.6920 8.6340 -0.9867 43 1 8.6905 11.7433 -0.3070 44 1 5.0785 7.5591 -1.5848 45 1 4.5576 7.6943 0.1145 46 1 2.7263 3.9383 2.1362 47 1 1.5389 2.1809 3.2345 48 1 0.9558 0.7619 2.3318 49 1 2.7403 0.1267 3.9319 50 1 3.2657 -0.1364 2.2519 51 1 3.8487 1.2826 3.1545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001092013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:29 Heat of formation + Delta-G solvation = -34.634583 kcal Electronic energy + Delta-G solvation = -28618.640218 eV Core-core repulsion = 24902.399673 eV Total energy + Delta-G solvation = -3716.240545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73044 -40.27953 -38.70081 -36.38768 -35.60492 -34.33676 -33.87669 -32.80486 -30.98176 -30.64337 -29.55212 -26.90196 -25.93768 -25.30697 -24.52334 -23.30767 -22.50336 -22.44501 -21.28785 -20.13636 -19.16996 -18.21883 -17.49998 -17.00846 -16.83342 -16.63971 -16.07207 -15.75117 -15.49446 -15.43296 -15.19823 -14.80891 -14.77106 -14.54575 -14.46597 -14.17310 -14.03055 -13.90341 -13.74259 -13.45905 -13.20933 -13.14504 -12.91156 -12.82838 -12.58999 -12.49462 -12.27460 -12.11076 -12.04913 -11.98405 -11.94502 -11.72672 -11.66280 -11.43791 -11.39115 -11.15081 -10.89287 -9.89837 -9.76492 -9.49817 -9.05785 -8.01402 -5.30951 -0.00997 0.37345 1.41636 1.44727 1.50942 1.56552 1.94286 2.50953 2.69486 3.31072 3.40782 3.70769 3.75701 3.85621 3.92689 3.96499 4.02415 4.14404 4.16131 4.23661 4.30023 4.33588 4.44578 4.48674 4.55462 4.56470 4.57699 4.60349 4.69773 4.77627 4.82904 4.86182 4.88061 5.00207 5.02082 5.07324 5.09390 5.11059 5.14023 5.23948 5.34114 5.35877 5.36579 5.39254 5.41854 5.46977 5.51533 5.53586 5.68795 5.97114 6.21064 6.36552 7.03866 7.27795 7.99157 8.25449 9.20887 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019122 B = 0.002629 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.924800 B =10647.751904 C =11201.095580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.059 4.059 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.138 4.138 7 C 0.547 3.453 8 O -0.594 6.594 9 N -0.595 5.595 10 C 0.093 3.907 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.169 3.831 14 H 0.029 0.971 15 N -0.728 5.728 16 C -0.249 4.249 17 H 0.063 0.937 18 C -0.066 4.066 19 N -0.962 5.962 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.284 1.284 24 C 0.107 3.893 25 C -0.087 4.087 26 C -0.084 4.084 27 C -0.088 4.088 28 C -0.145 4.145 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.378 0.622 43 H 0.254 0.746 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 -30.546 -3.599 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.059 4.059 4 C -0.130 4.130 5 C -0.111 4.111 6 C -0.141 4.141 7 C 0.337 3.663 8 O -0.476 6.476 9 N -0.327 5.327 10 C -0.027 4.027 11 C -0.159 4.159 12 C -0.156 4.156 13 C 0.059 3.941 14 H 0.047 0.953 15 N -0.368 5.368 16 C -0.380 4.380 17 H 0.081 0.919 18 C -0.259 4.259 19 N -0.612 5.612 20 Si 0.797 3.203 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.211 1.211 24 C -0.019 4.019 25 C -0.106 4.106 26 C -0.084 4.084 27 C -0.125 4.125 28 C -0.202 4.202 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.211 0.789 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.659 -30.004 -3.137 32.715 hybrid contribution 0.240 2.085 0.747 2.228 sum -12.418 -27.919 -2.389 30.649 Atomic orbital electron populations 1.21772 0.94259 1.02639 1.01920 1.20718 0.96441 0.90787 1.04535 1.20259 0.96405 0.97337 0.91921 1.21306 0.98649 0.94032 0.99007 1.21428 0.98247 0.95047 0.96336 1.19690 1.05730 0.92348 0.96322 1.19120 0.80467 0.89042 0.77684 1.90752 1.58552 1.51572 1.46738 1.48245 1.23681 1.11680 1.49067 1.22306 0.92516 0.92227 0.95694 1.21800 0.95265 0.96170 1.02683 1.21738 0.99326 0.95025 0.99463 1.20627 0.90494 0.85780 0.97229 0.95331 1.42481 1.62835 1.12104 1.19406 1.19459 1.27269 0.94920 0.96383 0.91912 1.25488 1.00847 0.99259 1.00338 1.69778 1.40851 1.20550 1.30012 0.85302 0.77433 0.78370 0.79221 1.20329 1.21325 1.21074 1.22271 0.96481 0.82330 1.00783 1.21007 0.97984 0.95188 0.96395 1.19855 0.99244 0.92739 0.96590 1.20663 0.99774 0.99465 0.92635 1.21755 0.96948 0.99770 1.01772 0.92815 0.90754 0.93106 0.89091 0.89611 0.82196 0.83873 0.86838 0.89092 0.86812 0.92354 0.91146 0.91847 0.78878 0.93729 0.91965 0.93556 0.87499 0.91741 0.88792 0.91004 0.91415 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.72 71.98 0.70 -0.52 16 2 C -0.09 -0.73 5.38 29.85 0.16 -0.57 16 3 C -0.06 -0.85 5.14 -19.81 -0.10 -0.95 16 4 C -0.11 -1.55 9.66 22.23 0.21 -1.34 16 5 C -0.09 -1.74 7.37 22.53 0.17 -1.58 16 6 C -0.14 -3.72 5.00 -20.09 -0.10 -3.82 16 7 C 0.55 19.70 7.24 86.79 0.63 20.32 16 8 O -0.59 -27.57 16.47 -3.88 -0.06 -27.63 16 9 N -0.60 -19.54 2.98 -823.14 -2.45 -21.99 16 10 C 0.09 2.05 5.34 86.22 0.46 2.51 16 11 C -0.12 -2.69 6.06 30.53 0.19 -2.50 16 12 C -0.12 -3.64 5.36 30.62 0.16 -3.48 16 13 C 0.17 7.06 2.92 45.07 0.13 7.19 16 14 H 0.03 1.31 8.08 -2.38 -0.02 1.29 16 15 N -0.73 -38.04 5.13 -322.56 -1.65 -39.70 16 16 C -0.25 -14.57 9.93 84.03 0.83 -13.74 16 17 H 0.06 3.70 7.83 -2.91 -0.02 3.67 16 18 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 19 N -0.96 -59.56 13.06 21.65 0.28 -59.28 16 20 Si 0.97 48.22 29.55 68.60 2.03 50.24 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 24 C 0.11 4.39 6.01 86.36 0.52 4.91 16 25 C -0.09 -2.22 9.37 22.53 0.21 -2.01 16 26 C -0.08 -1.56 5.13 -19.90 -0.10 -1.66 16 27 C -0.09 -1.26 5.38 29.85 0.16 -1.09 16 28 C -0.15 -1.77 9.72 71.98 0.70 -1.07 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.50 6.79 -2.39 -0.02 0.48 16 32 H 0.09 0.48 8.05 -2.39 -0.02 0.47 16 33 H 0.09 0.61 5.59 -2.38 -0.01 0.60 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.14 2.24 7.06 -2.91 -0.02 2.22 16 36 H 0.11 2.00 4.56 -2.39 -0.01 1.99 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.38 20.58 7.80 -92.71 -0.72 19.86 16 43 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.05 2.30 7.02 -2.39 -0.02 2.28 16 46 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.06 1.02 8.05 -2.38 -0.02 1.00 16 48 H 0.09 1.01 5.60 -2.39 -0.01 0.99 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.68 6.79 -2.38 -0.02 0.67 16 51 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -76.66 397.78 3.74 -72.93 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.20 Total: 28.29 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.40 Total: -2.87 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -3.82 Total: -120.96 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.06 Total: -27.63 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Total: -76.66 3.74 -72.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001092013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.294 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds