Wall clock time and date at job start Tue Mar 31 2020 16:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47002 * 2 1 4 4 C 1.38259 * 120.00485 * 265.01942 * 3 2 1 5 5 C 1.38212 * 120.00314 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99687 * 0.03533 * 5 4 3 7 7 C 1.38211 * 120.00109 * 359.69012 * 6 5 4 8 8 C 1.38210 * 120.00068 * 85.00547 * 3 2 1 9 9 C 1.50704 * 120.00031 * 359.97438 * 8 3 2 10 10 C 1.50696 * 109.47218 * 84.99636 * 9 8 3 11 11 O 1.21282 * 120.00019 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00240 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00014 * 0.02562 * 12 10 9 14 14 C 1.46507 * 120.00359 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.45897 * 240.00340 * 14 12 10 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 12 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 119.93020 * 14 12 10 28 28 H 1.09006 * 109.47123 * 300.00050 * 1 2 3 29 29 H 1.09007 * 109.47192 * 59.99468 * 1 2 3 30 30 H 1.08996 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46735 * 240.00805 * 2 1 3 32 32 H 1.08994 * 109.47377 * 120.00480 * 2 1 3 33 33 H 1.08003 * 119.99764 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.99919 * 180.02562 * 5 4 3 35 35 H 1.08008 * 119.99611 * 179.97438 * 6 5 4 36 36 H 1.08003 * 120.00003 * 180.29613 * 7 6 5 37 37 H 1.09009 * 109.46728 * 325.00130 * 9 8 3 38 38 H 1.08998 * 109.47693 * 205.00775 * 9 8 3 39 39 H 1.08994 * 109.47201 * 270.00443 * 13 12 10 40 40 H 1.09000 * 109.46830 * 30.00191 * 13 12 10 41 41 H 1.08996 * 109.47301 * 149.99881 * 13 12 10 42 42 H 1.08996 * 109.45453 * 359.97332 * 14 12 10 43 43 H 1.09001 * 109.50071 * 58.66060 * 15 14 12 44 44 H 1.09005 * 109.49477 * 298.56396 * 15 14 12 45 45 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 46 46 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 47 47 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 49 49 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 50 50 H 1.08995 * 109.49931 * 301.34255 * 27 14 12 51 51 H 1.09003 * 109.49592 * 61.43695 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0380 -1.1928 5 6 2.8209 3.3413 -1.1928 6 6 2.9535 4.0275 0.0001 7 6 2.6198 3.4125 1.1920 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4347 2.4925 10 6 2.9844 0.6372 2.9877 11 8 4.0146 0.6171 2.3482 12 7 2.8938 -0.0538 4.1413 13 6 1.6491 -0.0300 4.9136 14 6 4.0400 -0.8287 4.6230 15 6 3.6469 -2.3034 4.7366 16 6 4.8575 -3.1156 5.2073 17 7 5.3680 -2.5295 6.4542 18 6 5.5386 -3.3039 7.5706 19 1 4.9217 -4.1775 7.7211 20 6 6.5044 -2.9662 8.5086 21 7 7.4648 -2.1244 8.1905 22 14 6.4410 -3.7065 10.2225 23 1 5.2715 -4.6159 10.3260 24 1 7.6878 -4.4717 10.4777 25 1 6.3128 -2.6200 11.2266 26 6 5.6880 -1.0953 6.4811 27 6 4.4681 -0.3058 5.9962 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.2569 1.5020 -2.1246 34 1 3.0771 3.8235 -2.1246 35 1 3.3135 5.0458 0.0001 36 1 2.7188 3.9502 2.1234 37 1 0.9568 0.7690 2.3351 38 1 1.5419 2.1908 3.2320 39 1 1.6776 0.7968 5.6233 40 1 0.8044 0.1006 4.2373 41 1 1.5393 -0.9697 5.4548 42 1 4.8679 -0.7266 3.9215 43 1 3.3199 -2.6688 3.7631 44 1 2.8355 -2.4091 5.4568 45 1 4.5580 -4.1484 5.3849 46 1 5.6357 -3.0868 4.4447 47 1 8.1399 -1.8887 8.8459 48 1 6.5349 -0.8997 5.8234 49 1 5.9379 -0.7935 7.4982 50 1 4.7255 0.7505 5.9192 51 1 3.6490 -0.4304 6.7045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005582917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:34 Heat of formation + Delta-G solvation = 0.971456 kcal Electronic energy + Delta-G solvation = -28985.219882 eV Core-core repulsion = 25270.523331 eV Total energy + Delta-G solvation = -3714.696551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.44051 -39.19057 -37.32717 -35.05776 -34.45686 -32.92408 -32.21136 -30.27559 -29.73573 -29.53799 -27.67286 -26.83180 -24.93346 -23.98823 -22.55753 -22.18390 -21.71918 -20.66732 -19.24085 -18.76891 -17.01903 -16.81038 -16.47660 -16.26720 -15.72128 -15.16214 -14.97330 -14.74540 -14.05189 -13.89219 -13.71311 -13.58947 -13.41989 -13.21569 -13.14511 -13.05978 -12.93641 -12.59906 -12.41961 -12.27561 -12.14563 -11.95381 -11.92311 -11.47820 -11.41946 -11.12321 -10.93069 -10.80910 -10.80057 -10.73717 -10.35598 -10.18770 -10.08038 -9.76676 -9.66690 -9.49152 -8.85856 -8.64578 -8.53387 -8.27921 -6.68577 -5.79392 -3.22198 1.25717 1.33277 2.78670 3.17710 3.36394 3.44167 3.46222 3.71545 4.48727 4.50516 4.61329 4.72228 4.78974 4.82420 5.00385 5.06584 5.15927 5.18421 5.25578 5.33227 5.36261 5.40187 5.43259 5.43883 5.50909 5.52143 5.67576 5.71586 5.73331 5.75345 5.88042 5.89661 5.99759 6.07892 6.08781 6.25604 6.33669 6.39327 6.42512 6.49270 6.57396 6.59538 6.62760 6.77209 6.90808 6.94652 6.97217 7.34817 7.58266 7.67781 7.79221 8.37170 8.44321 9.20343 9.83650 10.40869 11.29417 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.002563 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.082064 B =10921.787438 C =11310.010491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.105 4.105 10 C 0.512 3.488 11 O -0.533 6.533 12 N -0.610 5.610 13 C 0.075 3.925 14 C 0.145 3.855 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.174 3.826 27 C -0.144 4.144 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.090 0.910 50 H 0.049 0.951 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.484 9.769 -15.168 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.145 4.145 10 C 0.299 3.701 11 O -0.409 6.409 12 N -0.343 5.343 13 C -0.068 4.068 14 C 0.043 3.957 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.048 3.952 27 C -0.184 4.184 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.108 0.892 50 H 0.068 0.932 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.792 9.784 -15.388 24.123 hybrid contribution 0.038 -0.223 1.023 1.048 sum -15.753 9.561 -14.365 23.365 Atomic orbital electron populations 1.21769 0.94747 1.01796 1.02043 1.20567 0.95871 0.92929 1.03270 1.19658 0.98418 0.95674 0.92623 1.20964 1.00238 0.95188 0.97296 1.21083 0.99915 0.94845 0.97970 1.21053 1.00702 0.99967 0.92563 1.20974 0.98670 0.94497 0.98167 1.19151 0.99774 0.93931 0.93175 1.20797 0.97942 0.99980 0.95793 1.20428 0.89285 0.79684 0.80704 1.90719 1.31084 1.62949 1.56163 1.48173 1.14771 1.48884 1.22477 1.21760 0.85624 1.03096 0.96313 1.21175 0.87570 0.90190 0.96718 1.22365 1.00624 0.94857 0.99920 1.20854 0.92519 0.95381 0.89165 1.44091 1.75920 1.04260 1.07242 1.19212 1.12999 1.08764 0.97213 0.91627 1.25065 0.95055 0.99797 0.99758 1.70044 1.13404 1.37708 1.33446 0.86234 0.77417 0.78455 0.84720 1.20271 1.21715 1.21586 1.20753 0.90642 0.82354 1.01500 1.22538 1.01641 0.99208 0.95030 0.92591 0.92518 0.92262 0.90978 0.90934 0.86294 0.86321 0.86244 0.86281 0.88011 0.88334 0.92656 0.91653 0.90440 0.88772 0.93006 0.92089 0.92512 0.96260 0.93646 0.96214 0.89211 0.93181 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.72 37.16 0.36 -0.78 16 2 C -0.09 -0.91 5.38 -27.88 -0.15 -1.06 16 3 C -0.06 -0.74 5.13 -104.63 -0.54 -1.28 16 4 C -0.12 -1.27 9.68 -39.58 -0.38 -1.65 16 5 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 6 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 7 C -0.11 -1.21 9.68 -39.59 -0.38 -1.59 16 8 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 9 C -0.11 -1.14 3.72 -29.03 -0.11 -1.25 16 10 C 0.51 7.63 6.87 -10.99 -0.08 7.56 16 11 O -0.53 -10.23 15.36 5.56 0.09 -10.15 16 12 N -0.61 -8.83 2.76 -173.89 -0.48 -9.31 16 13 C 0.08 0.80 9.33 59.85 0.56 1.36 16 14 C 0.15 2.59 2.48 -67.89 -0.17 2.42 16 15 C -0.14 -2.40 5.31 -26.61 -0.14 -2.54 16 16 C 0.15 3.12 6.51 -3.71 -0.02 3.10 16 17 N -0.59 -14.81 3.00 -172.29 -0.52 -15.32 16 18 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.24 11.20 55.49 0.62 -25.62 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 C 0.17 4.18 5.30 -3.69 -0.02 4.17 16 27 C -0.14 -2.78 5.34 -26.61 -0.14 -2.92 16 28 H 0.06 0.41 6.80 -51.93 -0.35 0.06 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 32 H 0.07 0.85 6.42 -51.93 -0.33 0.52 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.10 0.90 4.88 -51.92 -0.25 0.65 16 38 H 0.10 0.87 8.02 -51.93 -0.42 0.45 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.51 6.44 -51.93 -0.33 0.17 16 41 H 0.08 0.86 6.45 -51.93 -0.34 0.52 16 42 H 0.09 1.94 6.90 -51.93 -0.36 1.59 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 50 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.06 1.08 7.72 -51.93 -0.40 0.67 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -32.49 394.48 -10.55 -43.04 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.48 Total: 0.92 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.70 Total: -6.02 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.38 Total: -50.26 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.49 -10.55 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005582917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.016 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds