Wall clock time and date at job start Tue Mar 31 2020 16:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47002 * 2 1 4 4 C 1.38259 * 120.00485 * 265.01942 * 3 2 1 5 5 C 1.38212 * 120.00314 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99687 * 0.03533 * 5 4 3 7 7 C 1.38211 * 120.00109 * 359.69012 * 6 5 4 8 8 C 1.38210 * 120.00068 * 85.00547 * 3 2 1 9 9 C 1.50704 * 120.00031 * 359.97438 * 8 3 2 10 10 C 1.50696 * 109.47218 * 84.99636 * 9 8 3 11 11 O 1.21282 * 120.00019 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00240 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00014 * 0.02562 * 12 10 9 14 14 C 1.46507 * 120.00359 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.45897 * 240.00340 * 14 12 10 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 12 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 119.93020 * 14 12 10 28 28 H 1.09006 * 109.47123 * 300.00050 * 1 2 3 29 29 H 1.09007 * 109.47192 * 59.99468 * 1 2 3 30 30 H 1.08996 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46735 * 240.00805 * 2 1 3 32 32 H 1.08994 * 109.47377 * 120.00480 * 2 1 3 33 33 H 1.08003 * 119.99764 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.99919 * 180.02562 * 5 4 3 35 35 H 1.08008 * 119.99611 * 179.97438 * 6 5 4 36 36 H 1.08003 * 120.00003 * 180.29613 * 7 6 5 37 37 H 1.09009 * 109.46728 * 325.00130 * 9 8 3 38 38 H 1.08998 * 109.47693 * 205.00775 * 9 8 3 39 39 H 1.08994 * 109.47201 * 270.00443 * 13 12 10 40 40 H 1.09000 * 109.46830 * 30.00191 * 13 12 10 41 41 H 1.08996 * 109.47301 * 149.99881 * 13 12 10 42 42 H 1.08996 * 109.45453 * 359.97332 * 14 12 10 43 43 H 1.09001 * 109.50071 * 58.66060 * 15 14 12 44 44 H 1.09005 * 109.49477 * 298.56396 * 15 14 12 45 45 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 46 46 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 47 47 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 49 49 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 50 50 H 1.08995 * 109.49931 * 301.34255 * 27 14 12 51 51 H 1.09003 * 109.49592 * 61.43695 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0380 -1.1928 5 6 2.8209 3.3413 -1.1928 6 6 2.9535 4.0275 0.0001 7 6 2.6198 3.4125 1.1920 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4347 2.4925 10 6 2.9844 0.6372 2.9877 11 8 4.0146 0.6171 2.3482 12 7 2.8938 -0.0538 4.1413 13 6 1.6491 -0.0300 4.9136 14 6 4.0400 -0.8287 4.6230 15 6 3.6469 -2.3034 4.7366 16 6 4.8575 -3.1156 5.2073 17 7 5.3680 -2.5295 6.4542 18 6 5.5386 -3.3039 7.5706 19 1 4.9217 -4.1775 7.7211 20 6 6.5044 -2.9662 8.5086 21 7 7.4648 -2.1244 8.1905 22 14 6.4410 -3.7065 10.2225 23 1 5.2715 -4.6159 10.3260 24 1 7.6878 -4.4717 10.4777 25 1 6.3128 -2.6200 11.2266 26 6 5.6880 -1.0953 6.4811 27 6 4.4681 -0.3058 5.9962 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.2569 1.5020 -2.1246 34 1 3.0771 3.8235 -2.1246 35 1 3.3135 5.0458 0.0001 36 1 2.7188 3.9502 2.1234 37 1 0.9568 0.7690 2.3351 38 1 1.5419 2.1908 3.2320 39 1 1.6776 0.7968 5.6233 40 1 0.8044 0.1006 4.2373 41 1 1.5393 -0.9697 5.4548 42 1 4.8679 -0.7266 3.9215 43 1 3.3199 -2.6688 3.7631 44 1 2.8355 -2.4091 5.4568 45 1 4.5580 -4.1484 5.3849 46 1 5.6357 -3.0868 4.4447 47 1 8.1399 -1.8887 8.8459 48 1 6.5349 -0.8997 5.8234 49 1 5.9379 -0.7935 7.4982 50 1 4.7255 0.7505 5.9192 51 1 3.6490 -0.4304 6.7045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005582917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:32 Heat of formation + Delta-G solvation = -15.807935 kcal Electronic energy + Delta-G solvation = -28985.947491 eV Core-core repulsion = 25270.523331 eV Total energy + Delta-G solvation = -3715.424160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.49386 -40.21715 -38.86829 -36.52507 -35.21691 -34.37977 -33.43890 -31.94974 -31.40121 -30.35661 -28.65688 -27.89150 -26.69171 -24.73966 -23.94827 -23.87628 -22.81452 -21.58014 -20.75413 -19.99815 -18.76252 -18.05288 -17.45303 -17.15769 -17.00583 -16.65268 -16.00397 -15.89603 -15.63583 -15.39392 -14.90537 -14.73974 -14.54894 -14.39004 -14.29698 -14.23043 -13.91282 -13.87715 -13.81023 -13.19160 -13.13350 -13.02767 -13.01457 -12.78657 -12.64191 -12.63318 -12.49414 -12.15064 -12.10430 -11.95917 -11.89120 -11.68156 -11.54173 -11.47919 -11.32797 -10.81406 -10.58680 -9.67389 -9.56097 -9.45628 -8.72992 -7.88694 -5.35318 0.44343 0.53090 1.47014 1.48595 1.59614 1.66334 2.05684 2.50909 2.88828 3.27421 3.61051 3.65052 3.75415 3.86532 3.98061 4.04859 4.05752 4.09676 4.27781 4.31520 4.33574 4.37495 4.44727 4.50353 4.52720 4.60892 4.65008 4.70485 4.73396 4.74288 4.77440 4.85104 4.97899 5.03344 5.04112 5.06134 5.09704 5.12993 5.18391 5.24705 5.28055 5.41095 5.44065 5.59820 5.62572 5.62980 5.64540 5.68054 5.76855 6.16272 6.37240 6.49596 7.12165 7.23471 7.82073 8.35761 9.18799 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.002563 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.082064 B =10921.787438 C =11310.010491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.132 4.132 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.080 4.080 9 C -0.094 4.094 10 C 0.509 3.491 11 O -0.584 6.584 12 N -0.608 5.608 13 C 0.067 3.933 14 C 0.155 3.845 15 C -0.120 4.120 16 C 0.143 3.857 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.182 3.818 27 C -0.126 4.126 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.003 0.997 47 H 0.250 0.750 48 H -0.015 1.015 49 H 0.059 0.941 50 H 0.053 0.947 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.710 9.976 -15.390 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.140 4.140 8 C -0.081 4.081 9 C -0.133 4.133 10 C 0.299 3.701 11 O -0.464 6.464 12 N -0.340 5.340 13 C -0.074 4.074 14 C 0.051 3.949 15 C -0.160 4.160 16 C 0.017 3.983 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.056 3.944 27 C -0.165 4.165 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.003 0.997 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.082 9.986 -15.616 26.603 hybrid contribution 1.094 -0.283 0.995 1.506 sum -17.988 9.703 -14.621 25.129 Atomic orbital electron populations 1.21738 0.92765 1.02628 1.02638 1.20563 0.97546 0.92000 1.02381 1.19938 0.98618 0.96337 0.92980 1.21265 1.00214 0.95710 0.97835 1.21420 0.99222 0.94821 0.98897 1.21371 1.00528 1.00987 0.92511 1.21249 0.98889 0.94810 0.99029 1.19371 1.00582 0.94357 0.93782 1.20800 0.96393 1.00263 0.95811 1.21166 0.89756 0.79171 0.80031 1.90701 1.33388 1.64637 1.57635 1.48126 1.14923 1.48140 1.22802 1.22083 0.84673 1.03634 0.97057 1.20731 0.88302 0.91066 0.94762 1.22146 0.98950 0.93750 1.01125 1.20998 0.93494 0.96461 0.87346 1.44341 1.76123 1.04545 1.08163 1.19582 1.12631 1.08898 0.97929 0.91001 1.25877 0.94841 1.00680 1.03445 1.70215 1.14299 1.39518 1.34442 0.85165 0.77458 0.77652 0.79909 1.18654 1.22204 1.21628 1.20500 0.91819 0.83071 0.99057 1.22255 0.99612 0.98491 0.96192 0.91859 0.92065 0.91272 0.91010 0.92668 0.84793 0.84145 0.84421 0.85411 0.85619 0.85836 0.91470 0.88035 0.90444 0.92240 0.91074 0.90536 0.91751 0.97862 0.94128 0.99660 0.92228 0.92793 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.72 71.98 0.70 -1.14 16 2 C -0.09 -1.66 5.38 29.85 0.16 -1.50 16 3 C -0.08 -1.73 5.13 -19.87 -0.10 -1.84 16 4 C -0.13 -2.68 9.68 22.27 0.22 -2.47 16 5 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 6 C -0.14 -2.70 10.05 22.27 0.22 -2.47 16 7 C -0.12 -2.66 9.68 22.27 0.22 -2.45 16 8 C -0.08 -1.82 4.37 -19.87 -0.09 -1.90 16 9 C -0.09 -1.79 3.72 29.10 0.11 -1.68 16 10 C 0.51 14.54 6.87 87.66 0.60 15.15 16 11 O -0.58 -22.72 15.36 -3.04 -0.05 -22.76 16 12 N -0.61 -16.44 2.76 -822.45 -2.27 -18.71 16 13 C 0.07 1.18 9.33 127.77 1.19 2.37 16 14 C 0.16 5.47 2.48 45.02 0.11 5.58 16 15 C -0.12 -4.02 5.31 30.67 0.16 -3.86 16 16 C 0.14 6.06 6.51 86.36 0.56 6.63 16 17 N -0.61 -30.94 3.00 -699.01 -2.10 -33.04 16 18 C -0.26 -14.26 9.58 84.03 0.81 -13.45 16 19 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 20 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 21 N -0.94 -56.50 11.20 21.65 0.24 -56.26 16 22 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 26 C 0.18 9.11 5.30 86.35 0.46 9.57 16 27 C -0.13 -4.85 5.34 30.67 0.16 -4.68 16 28 H 0.06 0.73 6.80 -2.38 -0.02 0.71 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.31 8.05 -2.39 -0.02 1.29 16 32 H 0.05 1.23 6.42 -2.39 -0.02 1.22 16 33 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.13 1.76 4.88 -2.38 -0.01 1.75 16 38 H 0.12 1.74 8.02 -2.39 -0.02 1.72 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.07 6.44 -2.39 -0.02 1.05 16 41 H 0.08 1.40 6.45 -2.39 -0.02 1.39 16 42 H 0.06 2.54 6.90 -2.39 -0.02 2.53 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 2.37 6.72 -2.38 -0.02 2.35 16 45 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 49 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 50 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.07 2.53 7.72 -2.39 -0.02 2.52 16 Total: -1.00 -73.66 394.48 4.89 -68.77 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.90 Total: 18.20 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.13 Total: -2.89 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.13 Total: -108.00 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.66 4.89 -68.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005582917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.961 kcal (2) G-P(sol) polarization free energy of solvation -73.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds