Wall clock time and date at job start Tue Mar 31 2020 16:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47448 * 2 1 4 4 C 1.38261 * 119.99730 * 270.02021 * 3 2 1 5 5 C 1.38211 * 120.00178 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.99674 * 359.81160 * 5 4 3 7 7 C 1.38209 * 120.00409 * 0.41640 * 6 5 4 8 8 C 1.50702 * 120.00323 * 179.81017 * 7 6 5 9 9 C 1.50695 * 109.46908 * 269.72879 * 8 7 6 10 10 O 1.21276 * 120.00518 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99779 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99760 * 359.97438 * 11 9 8 13 13 C 1.46492 * 119.99963 * 180.02562 * 11 9 8 14 14 C 1.53045 * 109.46131 * 239.99711 * 13 11 9 15 15 C 1.53190 * 109.31412 * 178.61543 * 14 13 11 16 16 N 1.46924 * 108.89302 * 54.56599 * 15 14 13 17 17 C 1.36939 * 120.63060 * 126.46770 * 16 15 14 18 18 H 1.07997 * 119.99691 * 332.72781 * 17 16 15 19 19 C 1.38808 * 119.99990 * 152.73100 * 17 16 15 20 20 N 1.31611 * 120.00187 * 159.40601 * 19 17 16 21 21 Si 1.86807 * 120.00080 * 339.40635 * 19 17 16 22 22 H 1.48502 * 109.46912 * 92.90377 * 21 19 17 23 23 H 1.48493 * 109.47014 * 212.90653 * 21 19 17 24 24 H 1.48501 * 109.46860 * 332.90463 * 21 19 17 25 25 C 1.46967 * 118.71435 * 306.63798 * 16 15 14 26 26 C 1.53043 * 109.46146 * 119.93120 * 13 11 9 27 27 C 1.38202 * 120.00464 * 89.99273 * 3 2 1 28 28 H 1.09004 * 109.46547 * 60.00731 * 1 2 3 29 29 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47558 * 300.00704 * 1 2 3 31 31 H 1.08995 * 109.47558 * 239.99296 * 2 1 3 32 32 H 1.09004 * 109.46547 * 119.99269 * 2 1 3 33 33 H 1.08010 * 119.99760 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.99780 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.99583 * 180.23053 * 6 5 4 36 36 H 1.09001 * 109.46884 * 149.73056 * 8 7 6 37 37 H 1.08996 * 109.46605 * 29.73053 * 8 7 6 38 38 H 1.09004 * 109.47584 * 270.00168 * 12 11 9 39 39 H 1.09000 * 109.47312 * 30.00340 * 12 11 9 40 40 H 1.08998 * 109.47199 * 150.00150 * 12 11 9 41 41 H 1.09000 * 109.46202 * 359.97320 * 13 11 9 42 42 H 1.08999 * 109.49467 * 58.66061 * 14 13 11 43 43 H 1.09001 * 109.52263 * 298.58657 * 14 13 11 44 44 H 1.09004 * 109.58495 * 174.42385 * 15 14 13 45 45 H 1.08999 * 109.58469 * 294.70784 * 15 14 13 46 46 H 0.97006 * 120.00623 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.46555 * 293.57797 * 25 16 15 48 48 H 1.08995 * 109.70994 * 173.28941 * 25 16 15 49 49 H 1.08998 * 109.49429 * 301.33701 * 26 13 11 50 50 H 1.08996 * 109.49685 * 61.43262 * 26 13 11 51 51 H 1.08005 * 120.00238 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0726 -1.1974 5 6 2.7227 3.3758 -1.1975 6 6 2.9494 4.0289 -0.0002 7 6 2.7239 3.3758 1.1968 8 6 2.9751 4.0863 2.5018 9 6 4.3981 3.8490 2.9371 10 8 5.1357 3.1696 2.2551 11 7 4.8510 4.3912 4.0850 12 6 3.9599 5.2115 4.9092 13 6 6.2345 4.1610 4.5080 14 6 6.2420 3.4609 5.8688 15 6 7.6894 3.1908 6.2918 16 7 8.4381 4.4546 6.2595 17 6 9.1369 4.8797 7.3577 18 1 8.8243 4.5783 8.3466 19 6 10.2469 5.6981 7.2000 20 7 10.6741 6.4291 8.2076 21 14 11.1346 5.7618 5.5575 22 1 10.5851 6.8737 4.7408 23 1 12.5845 5.9857 5.7868 24 1 10.9396 4.4767 4.8393 25 6 8.4193 5.2551 5.0272 26 6 6.9637 5.5020 4.6184 27 6 2.2627 2.0724 1.1968 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.0825 1.5633 -2.1327 34 1 2.9020 3.8851 -2.1329 35 1 3.3055 5.0485 -0.0003 36 1 2.2940 3.7025 3.2614 37 1 2.8084 5.1555 2.3712 38 1 4.0362 6.2540 4.6000 39 1 2.9324 4.8698 4.7842 40 1 4.2480 5.1212 5.9565 41 1 6.7391 3.5330 3.7737 42 1 5.7023 2.5167 5.7951 43 1 5.7595 4.0988 6.6093 44 1 7.7046 2.7827 7.3024 45 1 8.1444 2.4788 5.6033 46 1 11.4501 7.0008 8.0975 47 1 8.9347 4.7133 4.2341 48 1 8.9169 6.2092 5.2010 49 1 6.9378 6.0107 3.6547 50 1 6.4747 6.1212 5.3704 51 1 2.0822 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005607163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:39 Heat of formation + Delta-G solvation = 4.259993 kcal Electronic energy + Delta-G solvation = -28425.124732 eV Core-core repulsion = 24710.570782 eV Total energy + Delta-G solvation = -3714.553950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.37747 -39.34115 -37.65122 -35.25865 -34.65321 -32.88141 -32.22076 -30.53509 -30.37246 -29.69856 -27.77853 -26.94063 -24.87459 -24.17223 -22.89644 -22.46788 -21.83219 -20.70493 -19.46953 -18.87996 -17.11667 -16.88865 -16.63284 -16.10845 -15.95592 -15.27365 -15.23264 -14.88310 -14.20336 -14.08557 -13.92535 -13.76665 -13.62710 -13.34773 -13.21039 -13.13128 -13.00933 -12.97756 -12.39306 -12.32805 -12.22210 -12.10228 -11.97982 -11.88774 -11.78190 -11.48909 -11.05452 -10.97242 -10.90529 -10.82732 -10.53980 -10.20316 -10.10523 -9.84184 -9.66854 -9.47203 -8.91258 -8.74297 -8.64333 -8.45095 -6.99968 -5.95803 -3.31695 1.19138 1.27184 2.68257 3.05491 3.32552 3.49633 3.53700 3.64381 4.42422 4.49185 4.53002 4.63610 4.65533 4.87152 4.94155 4.94337 5.00396 5.07707 5.09398 5.22335 5.22716 5.26121 5.26388 5.35494 5.36539 5.42730 5.51989 5.61004 5.61781 5.65237 5.71057 5.80909 5.83714 5.92169 5.96350 6.03777 6.06282 6.18852 6.31764 6.32922 6.39794 6.42004 6.47118 6.59455 6.61609 6.66210 6.75147 6.87058 6.90079 7.49303 7.94832 8.25582 8.31599 8.92674 9.71195 10.08947 11.20020 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.002420 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.308839 B =11567.481358 C =11789.120881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.060 4.060 8 C -0.102 4.102 9 C 0.512 3.488 10 O -0.534 6.534 11 N -0.610 5.610 12 C 0.074 3.926 13 C 0.145 3.855 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.086 0.914 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.129 3.871 26 C -0.138 4.138 27 C -0.102 4.102 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.027 0.973 48 H 0.075 0.925 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.959 -6.711 -15.311 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.060 4.060 8 C -0.141 4.141 9 C 0.300 3.700 10 O -0.410 6.410 11 N -0.343 5.343 12 C -0.069 4.069 13 C 0.043 3.957 14 C -0.180 4.180 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.387 4.387 18 H 0.104 0.896 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C 0.002 3.998 26 C -0.178 4.178 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.427 -6.972 -15.571 28.179 hybrid contribution 0.609 0.367 -0.793 1.065 sum -21.818 -6.605 -16.364 28.061 Atomic orbital electron populations 1.21743 0.94772 1.01627 1.02142 1.20541 0.96070 0.92753 1.02931 1.19818 0.99226 0.96083 0.93091 1.20979 1.00513 0.95007 0.97364 1.21060 0.99567 0.94978 0.97829 1.20954 0.99795 1.00027 0.92019 1.19285 0.98656 0.94369 0.93690 1.20726 0.95072 1.02335 0.95996 1.20484 0.89300 0.79604 0.80659 1.90715 1.58180 1.38731 1.53424 1.48118 1.13044 1.50855 1.22302 1.21796 0.93426 0.94943 0.96739 1.21122 0.80066 0.97559 0.96986 1.22366 1.00013 0.99518 0.96062 1.20879 0.88907 0.88113 0.99657 1.44395 1.57546 1.19202 1.11843 1.18907 1.05867 1.27832 0.86131 0.89649 1.25272 0.97278 0.98311 0.96693 1.69830 1.26685 1.26960 1.31635 0.86979 0.78690 0.78220 0.84964 1.21649 1.23108 1.19468 1.21322 0.93310 0.96287 0.88849 1.22360 0.98644 0.96219 1.00615 1.20817 0.99741 0.93909 0.97576 0.92629 0.92456 0.92562 0.91080 0.91004 0.86380 0.86161 0.86361 0.88120 0.88099 0.92549 0.91417 0.90303 0.88658 0.92504 0.91593 0.91511 0.95754 0.92768 0.95560 0.90659 0.92673 0.91424 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.08 -0.83 5.13 -104.63 -0.54 -1.37 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 5 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 6 C -0.11 -1.21 9.70 -39.59 -0.38 -1.59 16 7 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 8 C -0.10 -1.00 4.38 -29.04 -0.13 -1.13 16 9 C 0.51 7.19 7.67 -10.98 -0.08 7.10 16 10 O -0.53 -9.78 15.36 5.56 0.09 -9.70 16 11 N -0.61 -8.26 2.76 -173.89 -0.48 -8.74 16 12 C 0.07 0.73 9.33 59.85 0.56 1.29 16 13 C 0.14 2.40 2.48 -67.89 -0.17 2.24 16 14 C -0.14 -2.29 5.31 -26.61 -0.14 -2.43 16 15 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 16 N -0.61 -14.37 2.78 -172.29 -0.48 -14.85 16 17 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 18 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 19 C 0.02 0.68 5.23 -17.44 -0.09 0.58 16 20 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 21 Si 0.88 22.62 24.35 -169.99 -4.14 18.48 16 22 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.27 -6.88 6.63 56.52 0.37 -6.51 16 25 C 0.13 2.84 4.20 -3.69 -0.02 2.83 16 26 C -0.14 -2.48 5.34 -26.61 -0.14 -2.62 16 27 C -0.10 -1.12 9.36 -39.59 -0.37 -1.49 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.10 0.77 7.34 -51.93 -0.38 0.38 16 37 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 40 H 0.08 0.82 6.46 -51.93 -0.34 0.49 16 41 H 0.10 1.81 6.90 -51.93 -0.36 1.45 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.06 6.73 -51.93 -0.35 0.71 16 44 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.03 0.59 7.07 -51.93 -0.37 0.23 16 48 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 1.20 7.72 -51.93 -0.40 0.80 16 51 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -33.59 395.24 -9.69 -43.29 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.69 Total: -0.81 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.72 Total: -6.65 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.18 Total: -50.56 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.59 -9.69 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005607163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.547 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds