Wall clock time and date at job start Tue Mar 31 2020 16:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47448 * 2 1 4 4 C 1.38261 * 119.99730 * 270.02021 * 3 2 1 5 5 C 1.38211 * 120.00178 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.99674 * 359.81160 * 5 4 3 7 7 C 1.38209 * 120.00409 * 0.41640 * 6 5 4 8 8 C 1.50702 * 120.00323 * 179.81017 * 7 6 5 9 9 C 1.50695 * 109.46908 * 269.72879 * 8 7 6 10 10 O 1.21276 * 120.00518 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99779 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99760 * 359.97438 * 11 9 8 13 13 C 1.46492 * 119.99963 * 180.02562 * 11 9 8 14 14 C 1.53045 * 109.46131 * 239.99711 * 13 11 9 15 15 C 1.53190 * 109.31412 * 178.61543 * 14 13 11 16 16 N 1.46924 * 108.89302 * 54.56599 * 15 14 13 17 17 C 1.36939 * 120.63060 * 126.46770 * 16 15 14 18 18 H 1.07997 * 119.99691 * 332.72781 * 17 16 15 19 19 C 1.38808 * 119.99990 * 152.73100 * 17 16 15 20 20 N 1.31611 * 120.00187 * 159.40601 * 19 17 16 21 21 Si 1.86807 * 120.00080 * 339.40635 * 19 17 16 22 22 H 1.48502 * 109.46912 * 92.90377 * 21 19 17 23 23 H 1.48493 * 109.47014 * 212.90653 * 21 19 17 24 24 H 1.48501 * 109.46860 * 332.90463 * 21 19 17 25 25 C 1.46967 * 118.71435 * 306.63798 * 16 15 14 26 26 C 1.53043 * 109.46146 * 119.93120 * 13 11 9 27 27 C 1.38202 * 120.00464 * 89.99273 * 3 2 1 28 28 H 1.09004 * 109.46547 * 60.00731 * 1 2 3 29 29 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47558 * 300.00704 * 1 2 3 31 31 H 1.08995 * 109.47558 * 239.99296 * 2 1 3 32 32 H 1.09004 * 109.46547 * 119.99269 * 2 1 3 33 33 H 1.08010 * 119.99760 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.99780 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.99583 * 180.23053 * 6 5 4 36 36 H 1.09001 * 109.46884 * 149.73056 * 8 7 6 37 37 H 1.08996 * 109.46605 * 29.73053 * 8 7 6 38 38 H 1.09004 * 109.47584 * 270.00168 * 12 11 9 39 39 H 1.09000 * 109.47312 * 30.00340 * 12 11 9 40 40 H 1.08998 * 109.47199 * 150.00150 * 12 11 9 41 41 H 1.09000 * 109.46202 * 359.97320 * 13 11 9 42 42 H 1.08999 * 109.49467 * 58.66061 * 14 13 11 43 43 H 1.09001 * 109.52263 * 298.58657 * 14 13 11 44 44 H 1.09004 * 109.58495 * 174.42385 * 15 14 13 45 45 H 1.08999 * 109.58469 * 294.70784 * 15 14 13 46 46 H 0.97006 * 120.00623 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.46555 * 293.57797 * 25 16 15 48 48 H 1.08995 * 109.70994 * 173.28941 * 25 16 15 49 49 H 1.08998 * 109.49429 * 301.33701 * 26 13 11 50 50 H 1.08996 * 109.49685 * 61.43262 * 26 13 11 51 51 H 1.08005 * 120.00238 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0726 -1.1974 5 6 2.7227 3.3758 -1.1975 6 6 2.9494 4.0289 -0.0002 7 6 2.7239 3.3758 1.1968 8 6 2.9751 4.0863 2.5018 9 6 4.3981 3.8490 2.9371 10 8 5.1357 3.1696 2.2551 11 7 4.8510 4.3912 4.0850 12 6 3.9599 5.2115 4.9092 13 6 6.2345 4.1610 4.5080 14 6 6.2420 3.4609 5.8688 15 6 7.6894 3.1908 6.2918 16 7 8.4381 4.4546 6.2595 17 6 9.1369 4.8797 7.3577 18 1 8.8243 4.5783 8.3466 19 6 10.2469 5.6981 7.2000 20 7 10.6741 6.4291 8.2076 21 14 11.1346 5.7618 5.5575 22 1 10.5851 6.8737 4.7408 23 1 12.5845 5.9857 5.7868 24 1 10.9396 4.4767 4.8393 25 6 8.4193 5.2551 5.0272 26 6 6.9637 5.5020 4.6184 27 6 2.2627 2.0724 1.1968 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.0825 1.5633 -2.1327 34 1 2.9020 3.8851 -2.1329 35 1 3.3055 5.0485 -0.0003 36 1 2.2940 3.7025 3.2614 37 1 2.8084 5.1555 2.3712 38 1 4.0362 6.2540 4.6000 39 1 2.9324 4.8698 4.7842 40 1 4.2480 5.1212 5.9565 41 1 6.7391 3.5330 3.7737 42 1 5.7023 2.5167 5.7951 43 1 5.7595 4.0988 6.6093 44 1 7.7046 2.7827 7.3024 45 1 8.1444 2.4788 5.6033 46 1 11.4501 7.0008 8.0975 47 1 8.9347 4.7133 4.2341 48 1 8.9169 6.2092 5.2010 49 1 6.9378 6.0107 3.6547 50 1 6.4747 6.1212 5.3704 51 1 2.0822 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005607163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:38 Heat of formation + Delta-G solvation = -14.362399 kcal Electronic energy + Delta-G solvation = -28425.932259 eV Core-core repulsion = 24710.570782 eV Total energy + Delta-G solvation = -3715.361477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.40361 -40.24035 -39.10275 -36.62215 -35.34576 -34.41852 -33.38124 -32.12142 -31.99412 -30.37923 -28.69659 -27.91202 -26.56864 -24.79244 -24.49566 -23.80184 -22.89485 -21.64980 -20.83394 -19.95818 -18.84104 -18.12658 -17.52379 -17.32799 -16.91845 -16.74026 -16.11956 -15.96576 -15.84918 -15.38047 -15.07534 -14.77157 -14.60721 -14.58944 -14.46999 -14.23079 -14.08360 -13.91382 -13.79742 -13.69648 -13.44098 -13.13988 -12.94817 -12.83795 -12.64878 -12.59159 -12.49695 -12.22555 -12.12270 -12.03418 -11.78767 -11.68673 -11.62838 -11.48485 -11.35816 -10.91003 -10.70592 -9.67232 -9.59621 -9.48564 -8.99287 -8.18511 -5.50184 0.43076 0.52107 1.26358 1.38962 1.47366 1.65053 2.02498 2.38682 2.87241 3.02675 3.30074 3.61916 3.71140 3.82889 3.92839 3.96584 3.99976 4.19232 4.23625 4.27539 4.28931 4.31814 4.38717 4.44102 4.50933 4.56104 4.59126 4.61830 4.65978 4.69962 4.71510 4.79912 4.84204 4.89763 4.97388 5.01907 5.04293 5.04839 5.09655 5.13559 5.20320 5.23541 5.38864 5.39941 5.56173 5.59510 5.67449 5.74061 5.84848 6.11055 6.14993 6.46891 6.87982 7.20986 7.59000 8.00498 9.01003 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.002420 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.308839 B =11567.481358 C =11789.120881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.076 4.076 8 C -0.091 4.091 9 C 0.509 3.491 10 O -0.584 6.584 11 N -0.608 5.608 12 C 0.067 3.933 13 C 0.152 3.848 14 C -0.124 4.124 15 C 0.145 3.855 16 N -0.618 5.618 17 C -0.244 4.244 18 H 0.059 0.941 19 C -0.031 4.031 20 N -0.952 5.952 21 Si 0.938 3.062 22 H -0.275 1.275 23 H -0.309 1.309 24 H -0.269 1.269 25 C 0.124 3.876 26 C -0.125 4.125 27 C -0.119 4.119 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.262 0.738 47 H 0.023 0.977 48 H 0.055 0.945 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.608 -6.950 -16.839 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.076 4.076 8 C -0.130 4.130 9 C 0.299 3.701 10 O -0.464 6.464 11 N -0.340 5.340 12 C -0.075 4.075 13 C 0.049 3.951 14 C -0.164 4.164 15 C 0.020 3.980 16 N -0.343 5.343 17 C -0.374 4.374 18 H 0.077 0.923 19 C -0.226 4.226 20 N -0.599 5.599 21 Si 0.768 3.232 22 H -0.202 1.202 23 H -0.238 1.238 24 H -0.194 1.194 25 C -0.002 4.002 26 C -0.165 4.165 27 C -0.137 4.137 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.136 -7.213 -17.115 31.253 hybrid contribution 1.368 0.369 -0.313 1.451 sum -23.768 -6.844 -17.428 30.257 Atomic orbital electron populations 1.21710 0.93678 1.02404 1.02062 1.20581 0.96975 0.91550 1.03172 1.20138 0.98870 0.97078 0.93084 1.21277 1.00251 0.95147 0.98146 1.21368 0.99241 0.95326 0.98466 1.21203 1.00283 1.00681 0.92460 1.19520 0.98926 0.94745 0.94404 1.20756 0.92338 1.03922 0.96021 1.21204 0.90555 0.78407 0.79913 1.90697 1.59803 1.40963 1.54890 1.48088 1.12019 1.51128 1.22732 1.22088 0.94469 0.95152 0.95776 1.20758 0.81970 0.96123 0.96296 1.22171 0.97510 1.00675 0.96034 1.21052 0.90596 0.86501 0.99887 1.44517 1.57606 1.20930 1.11250 1.18873 1.05605 1.26390 0.86514 0.92289 1.25818 0.98318 0.98844 0.99599 1.69937 1.27570 1.28629 1.33723 0.86043 0.77022 0.78527 0.81618 1.20178 1.23804 1.19390 1.21316 0.96029 0.94899 0.87946 1.22170 0.95852 0.97299 1.01191 1.21046 1.00249 0.94179 0.98244 0.92535 0.91249 0.92802 0.90432 0.91174 0.84629 0.84471 0.85630 0.85322 0.85588 0.91399 0.87862 0.90741 0.91116 0.90542 0.90909 0.91612 0.95630 0.92915 0.95931 0.92699 0.91449 0.90925 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.09 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.09 -1.73 5.13 -19.87 -0.10 -1.83 16 4 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 5 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 6 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 7 C -0.08 -1.56 4.37 -19.86 -0.09 -1.65 16 8 C -0.09 -1.50 4.38 29.10 0.13 -1.38 16 9 C 0.51 13.11 7.67 87.65 0.67 13.78 16 10 O -0.58 -20.86 15.36 -3.02 -0.05 -20.91 16 11 N -0.61 -14.72 2.76 -822.44 -2.27 -16.99 16 12 C 0.07 1.05 9.33 127.77 1.19 2.25 16 13 C 0.15 4.78 2.48 45.02 0.11 4.89 16 14 C -0.12 -3.82 5.31 30.67 0.16 -3.66 16 15 C 0.14 5.62 6.51 86.36 0.56 6.18 16 16 N -0.62 -29.18 2.78 -699.01 -1.94 -31.12 16 17 C -0.24 -13.75 10.04 84.03 0.84 -12.91 16 18 H 0.06 3.58 8.05 -2.91 -0.02 3.55 16 19 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 20 N -0.95 -59.56 13.97 21.65 0.30 -59.26 16 21 Si 0.94 47.45 24.35 68.60 1.67 49.12 16 22 H -0.27 -13.15 6.62 99.48 0.66 -12.49 16 23 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 24 H -0.27 -13.39 6.63 99.48 0.66 -12.73 16 25 C 0.12 5.38 4.20 86.35 0.36 5.74 16 26 C -0.13 -4.28 5.34 30.67 0.16 -4.12 16 27 C -0.12 -2.43 9.36 22.27 0.21 -2.22 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.13 1.39 7.34 -2.39 -0.02 1.37 16 37 H 0.13 1.45 8.05 -2.39 -0.02 1.43 16 38 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.10 0.92 6.44 -2.39 -0.02 0.90 16 40 H 0.07 1.28 6.46 -2.39 -0.02 1.27 16 41 H 0.07 2.62 6.90 -2.39 -0.02 2.61 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 2.17 6.73 -2.39 -0.02 2.15 16 44 H 0.07 2.52 7.93 -2.38 -0.02 2.51 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 47 H 0.02 1.00 7.07 -2.39 -0.02 0.99 16 48 H 0.05 2.61 4.50 -2.39 -0.01 2.59 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.07 2.42 7.72 -2.39 -0.02 2.40 16 51 H 0.12 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -74.48 395.24 4.72 -69.76 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.80 Total: 14.29 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 6.21 Total: -4.89 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -3.91 Total: -107.38 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.67 Total: 49.12 kcal Total: -74.48 4.72 -69.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005607163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.398 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds