Wall clock time and date at job start Tue Mar 31 2020 16:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46763 * 2 1 4 4 C 1.38232 * 120.00224 * 89.99949 * 3 2 1 5 5 C 1.38238 * 119.99826 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99759 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47157 * 359.97438 * 7 6 5 9 9 C 1.52991 * 109.47353 * 119.99763 * 7 6 5 10 10 C 1.50700 * 109.46887 * 239.99740 * 7 6 5 11 11 O 1.21286 * 120.00055 * 0.02562 * 10 7 6 12 12 N 1.34775 * 120.00068 * 179.97438 * 10 7 6 13 13 C 1.46506 * 119.99977 * 179.97438 * 12 10 7 14 14 H 1.08994 * 109.49740 * 35.00678 * 13 12 10 15 15 C 1.53040 * 109.49343 * 155.06634 * 13 12 10 16 16 C 1.53045 * 109.53552 * 181.34966 * 15 13 12 17 17 C 1.53187 * 109.31386 * 298.63585 * 16 15 13 18 18 N 1.46927 * 108.77749 * 54.63504 * 17 16 15 19 19 C 1.36935 * 120.63235 * 126.41205 * 18 17 16 20 20 H 1.08005 * 119.99603 * 207.68171 * 19 18 17 21 21 C 1.38806 * 120.00126 * 27.67752 * 19 18 17 22 22 N 1.31614 * 120.00086 * 17.35643 * 21 19 18 23 23 Si 1.86802 * 120.00189 * 197.35767 * 21 19 18 24 24 H 1.48498 * 109.47131 * 89.99840 * 23 21 19 25 25 H 1.48493 * 109.47342 * 210.00052 * 23 21 19 26 26 H 1.48508 * 109.46944 * 329.99903 * 23 21 19 27 27 C 1.46930 * 118.73524 * 306.39416 * 18 17 16 28 28 C 1.38227 * 120.00137 * 0.25233 * 6 5 4 29 29 C 1.38235 * 120.00154 * 359.49295 * 28 6 5 30 30 H 1.09004 * 109.47031 * 60.00956 * 1 2 3 31 31 H 1.09003 * 109.46787 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47419 * 300.00399 * 1 2 3 33 33 H 1.08994 * 109.47697 * 239.99203 * 2 1 3 34 34 H 1.09004 * 109.46505 * 119.99025 * 2 1 3 35 35 H 1.08005 * 120.00137 * 359.97438 * 4 3 2 36 36 H 1.07999 * 119.99941 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47247 * 59.99739 * 9 7 6 38 38 H 1.09004 * 109.47359 * 179.97438 * 9 7 6 39 39 H 1.08996 * 109.47498 * 299.99902 * 9 7 6 40 40 H 0.97004 * 120.00005 * 0.02562 * 12 10 7 41 41 H 1.08996 * 109.46835 * 301.37043 * 15 13 12 42 42 H 1.08998 * 109.46178 * 61.33448 * 15 13 12 43 43 H 1.08997 * 109.49558 * 58.59244 * 16 15 13 44 44 H 1.09000 * 109.49622 * 178.68379 * 16 15 13 45 45 H 1.08999 * 109.59324 * 174.42102 * 17 16 15 46 46 H 1.09000 * 109.59216 * 294.84984 * 17 16 15 47 47 H 0.97002 * 120.00256 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58504 * 293.81419 * 27 18 17 49 49 H 1.09000 * 109.58773 * 173.39385 * 27 18 17 50 50 H 1.07996 * 120.00225 * 179.72958 * 28 6 5 51 51 H 1.08001 * 120.00728 * 180.22834 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7228 3.3761 1.1970 6 6 2.9531 4.0277 -0.0002 7 6 3.4543 5.4489 -0.0003 8 1 3.5742 5.7919 1.0273 9 6 4.8023 5.5144 -0.7209 10 6 2.4612 6.3316 -0.7113 11 8 1.4462 5.8538 -1.1722 12 7 2.7004 7.6523 -0.8342 13 6 1.7352 8.5103 -1.5260 14 1 0.7244 8.1537 -1.3285 15 6 1.8771 9.9483 -1.0219 16 6 0.8465 10.8392 -1.7194 17 6 1.1064 10.8282 -3.2290 18 7 1.1156 9.4356 -3.6972 19 6 0.3105 9.0424 -4.7328 20 1 -0.0284 8.0187 -4.7947 21 6 -0.0700 9.9593 -5.7029 22 7 0.5908 11.0898 -5.8352 23 14 -1.5202 9.5889 -6.8207 24 1 -2.7675 10.1026 -6.1999 25 1 -1.3133 10.2484 -8.1349 26 1 -1.6324 8.1210 -7.0158 27 6 2.0052 8.4730 -3.0334 28 6 2.7183 3.3776 -1.1973 29 6 2.2632 2.0723 -1.1973 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8898 34 1 1.8932 -0.5137 0.8901 35 1 2.0822 1.5636 2.1325 36 1 2.9024 3.8854 2.1323 37 1 4.6820 5.1715 -1.7485 38 1 5.1645 6.5424 -0.7213 39 1 5.5206 4.8759 -0.2067 40 1 3.5121 8.0345 -0.4653 41 1 1.7097 9.9740 0.0549 42 1 2.8804 10.3130 -1.2419 43 1 -0.1559 10.4606 -1.5200 44 1 0.9325 11.8585 -1.3428 45 1 0.3174 11.3802 -3.7398 46 1 2.0717 11.2899 -3.4371 47 1 0.3251 11.7304 -6.5134 48 1 3.0437 8.7426 -3.2255 49 1 1.8092 7.4709 -3.4150 50 1 2.8941 3.8881 -2.1326 51 1 2.0832 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008897392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:38 Heat of formation + Delta-G solvation = -13.091179 kcal Electronic energy + Delta-G solvation = -28477.288035 eV Core-core repulsion = 24761.981682 eV Total energy + Delta-G solvation = -3715.306353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.31785 -39.04055 -37.35351 -35.11336 -34.28945 -32.90691 -32.13701 -30.92540 -30.44612 -28.97537 -28.19954 -25.26705 -25.01391 -23.44995 -22.78003 -22.12640 -21.82109 -20.69505 -19.80801 -19.18259 -16.90451 -16.82963 -16.47152 -15.64067 -15.55309 -15.02255 -14.78454 -14.61304 -14.13209 -13.99977 -13.78016 -13.66627 -13.43292 -13.34323 -13.21620 -13.11107 -12.86346 -12.43779 -12.39415 -12.30613 -11.95071 -11.80662 -11.69680 -11.56662 -11.27446 -11.07113 -10.86781 -10.85631 -10.84266 -10.77870 -10.24709 -10.20226 -9.89061 -9.87423 -9.60776 -9.38377 -8.85816 -8.77345 -8.52825 -8.37696 -6.65730 -5.76564 -3.18578 1.29890 1.45095 2.89304 3.37066 3.41660 3.48055 3.50915 3.82621 4.46377 4.53341 4.64928 4.70830 4.82325 4.96096 5.02550 5.12213 5.17106 5.19605 5.31358 5.38020 5.40272 5.43854 5.49708 5.54955 5.56803 5.63103 5.68430 5.69782 5.74333 5.81049 5.96234 5.98859 6.06042 6.09361 6.10605 6.18668 6.25836 6.41130 6.54714 6.60149 6.62354 6.63250 6.71016 6.71594 6.86003 7.00907 7.02877 7.37383 7.65951 7.80217 7.85096 8.46007 8.53562 9.24176 9.86564 10.42141 11.32139 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.002870 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.808956 B = 9755.160377 C =11194.806323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.069 4.069 7 C -0.072 4.072 8 H 0.100 0.900 9 C -0.140 4.140 10 C 0.513 3.487 11 O -0.526 6.526 12 N -0.723 5.723 13 C 0.126 3.874 14 H 0.085 0.915 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.144 3.856 28 C -0.077 4.077 29 C -0.119 4.119 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.393 0.607 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.056 0.944 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -14.610 16.315 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.141 4.141 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.093 4.093 8 H 0.118 0.882 9 C -0.198 4.198 10 C 0.298 3.702 11 O -0.401 6.401 12 N -0.373 5.373 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.153 4.153 16 C -0.180 4.180 17 C 0.041 3.959 18 N -0.311 5.311 19 C -0.379 4.379 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.016 3.984 28 C -0.095 4.095 29 C -0.137 4.137 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.075 0.925 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.524 -14.829 15.817 22.950 hybrid contribution -0.340 0.234 -0.376 0.559 sum 7.184 -14.595 15.440 22.428 Atomic orbital electron populations 1.21755 0.94739 1.01488 1.02513 1.20525 0.96225 0.92797 1.02519 1.19866 0.99167 0.96202 0.93278 1.20878 1.01026 0.94922 0.97320 1.20940 0.99919 0.94949 0.97068 1.19286 1.00192 0.93876 0.93567 1.20303 0.95458 0.92296 1.01253 0.88188 1.21790 0.94301 1.02612 1.01080 1.20387 0.87200 0.82601 0.80060 1.90756 1.27668 1.73844 1.47876 1.46138 1.24773 1.07838 1.58596 1.21723 0.92887 0.88879 0.94435 0.89733 1.21673 1.00299 0.94619 0.98664 1.22182 0.98189 0.97460 1.00133 1.20843 1.00478 0.86241 0.88298 1.44003 1.45388 1.05126 1.36551 1.19236 1.21868 0.96427 1.00360 0.91574 1.25012 0.99677 0.97867 0.97081 1.70038 1.39193 1.10409 1.35276 0.86273 0.82803 0.77899 0.79762 1.21406 1.21782 1.20363 1.21164 0.93119 0.94610 0.89473 1.20926 0.96901 0.93919 0.97751 1.20990 1.00333 0.94957 0.97455 0.92342 0.92566 0.92575 0.91177 0.91303 0.86426 0.86352 0.91653 0.91645 0.91430 0.77333 0.93170 0.92288 0.92462 0.92750 0.89266 0.96322 0.93677 0.96585 0.92518 0.86142 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 5 C -0.11 -1.22 9.67 -39.58 -0.38 -1.61 16 6 C -0.07 -0.85 4.40 -104.63 -0.46 -1.31 16 7 C -0.07 -0.79 2.90 -92.93 -0.27 -1.06 16 8 H 0.10 0.87 7.88 -51.93 -0.41 0.47 16 9 C -0.14 -1.28 8.90 37.15 0.33 -0.94 16 10 C 0.51 7.75 6.99 -10.99 -0.08 7.67 16 11 O -0.53 -10.43 14.75 5.55 0.08 -10.35 16 12 N -0.72 -10.22 4.97 -53.69 -0.27 -10.49 16 13 C 0.13 2.27 2.60 -67.81 -0.18 2.10 16 14 H 0.08 1.78 7.58 -51.93 -0.39 1.38 16 15 C -0.11 -1.85 5.35 -26.69 -0.14 -1.99 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 18 N -0.59 -15.09 3.00 -172.32 -0.52 -15.61 16 19 C -0.25 -7.09 9.58 -15.06 -0.14 -7.24 16 20 H 0.07 1.90 7.89 -52.48 -0.41 1.49 16 21 C 0.00 0.05 4.91 -17.44 -0.09 -0.03 16 22 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 23 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.14 3.16 6.09 -3.71 -0.02 3.14 16 28 C -0.08 -1.03 7.92 -39.59 -0.31 -1.34 16 29 C -0.12 -1.45 9.70 -39.58 -0.38 -1.84 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.12 1.04 7.95 -52.49 -0.42 0.62 16 37 H 0.06 0.67 7.41 -51.93 -0.38 0.29 16 38 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.39 4.23 8.02 -40.82 -0.33 3.90 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 50 H 0.12 1.70 7.52 -52.49 -0.39 1.30 16 51 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -32.90 403.82 -10.96 -43.86 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.91 Total: 3.32 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.03 Total: -8.22 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.16 Total: -51.97 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.90 -10.96 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.772 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds