Wall clock time and date at job start Tue Mar 31 2020 16:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46673 * 2 1 4 4 C 1.38236 * 120.00674 * 89.99740 * 3 2 1 5 5 C 1.38224 * 120.00374 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00121 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00137 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46912 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.46669 * 120.00321 * 7 6 5 10 10 C 1.50690 * 109.47437 * 240.00666 * 7 6 5 11 11 O 1.21286 * 120.00168 * 359.97438 * 10 7 6 12 12 N 1.34785 * 120.00329 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00308 * 179.97438 * 12 10 7 14 14 H 1.09004 * 109.52428 * 325.07867 * 13 12 10 15 15 C 1.53042 * 109.49730 * 205.00285 * 13 12 10 16 16 C 1.53040 * 109.52643 * 178.67908 * 15 13 12 17 17 C 1.53188 * 109.31548 * 61.36782 * 16 15 13 18 18 N 1.46927 * 108.77367 * 305.36669 * 17 16 15 19 19 C 1.36940 * 120.63011 * 233.62978 * 18 17 16 20 20 H 1.07999 * 120.00272 * 151.82560 * 19 18 17 21 21 C 1.38820 * 119.99827 * 331.82532 * 19 18 17 22 22 N 1.31615 * 119.99827 * 343.07129 * 21 19 18 23 23 Si 1.86798 * 119.99672 * 163.06924 * 21 19 18 24 24 H 1.48499 * 109.47448 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46925 * 120.00521 * 23 21 19 26 26 H 1.48507 * 109.46974 * 240.00008 * 23 21 19 27 27 C 1.46919 * 118.74305 * 53.60977 * 18 17 16 28 28 C 1.38232 * 119.99927 * 0.26178 * 6 5 4 29 29 C 1.38238 * 119.99880 * 359.45968 * 28 6 5 30 30 H 1.08998 * 109.47469 * 300.00454 * 1 2 3 31 31 H 1.09007 * 109.47166 * 60.00631 * 1 2 3 32 32 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47469 * 239.99546 * 2 1 3 34 34 H 1.09000 * 109.47332 * 119.99048 * 2 1 3 35 35 H 1.07999 * 119.99524 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00100 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.46913 * 179.97438 * 9 7 6 38 38 H 1.08996 * 109.47712 * 300.00281 * 9 7 6 39 39 H 1.09003 * 109.47205 * 60.00614 * 9 7 6 40 40 H 0.96994 * 119.99429 * 0.02562 * 12 10 7 41 41 H 1.09001 * 109.46161 * 58.66169 * 15 13 12 42 42 H 1.09002 * 109.45705 * 298.69121 * 15 13 12 43 43 H 1.09001 * 109.49694 * 181.32251 * 16 15 13 44 44 H 1.09002 * 109.49691 * 301.38380 * 16 15 13 45 45 H 1.08999 * 109.58771 * 65.15343 * 17 16 15 46 46 H 1.08997 * 109.58612 * 185.58261 * 17 16 15 47 47 H 0.97000 * 119.99811 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.59166 * 66.17409 * 27 18 17 49 49 H 1.09001 * 109.58922 * 186.46151 * 27 18 17 50 50 H 1.08002 * 120.00384 * 179.72769 * 28 6 5 51 51 H 1.08001 * 120.00197 * 180.27828 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2625 2.0727 1.1971 5 6 2.7237 3.3757 1.1970 6 6 2.9551 4.0270 -0.0002 7 6 3.4573 5.4479 -0.0003 8 1 3.5779 5.7906 1.0274 9 6 4.8057 5.5120 -0.7205 10 6 2.4652 6.3313 -0.7117 11 8 1.4504 5.8541 -1.1736 12 7 2.7061 7.6517 -0.8355 13 6 1.7419 8.5104 -1.5276 14 1 1.2859 7.9578 -2.3491 15 6 2.4603 9.7443 -2.0787 16 6 1.4600 10.6256 -2.8301 17 6 0.3694 11.0935 -1.8615 18 7 -0.2285 9.9158 -1.2179 19 6 -1.5832 9.7177 -1.2460 20 1 -1.9834 8.7154 -1.2042 21 6 -2.4421 10.8051 -1.3284 22 7 -2.0026 12.0135 -1.0476 23 14 -4.2215 10.5533 -1.8378 24 1 -4.4627 9.1112 -2.0979 25 1 -5.1185 11.0172 -0.7491 26 1 -4.4979 11.3313 -3.0722 27 6 0.6547 8.9544 -0.5439 28 6 2.7201 3.3769 -1.1973 29 6 2.2644 2.0718 -1.1972 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0821 1.5637 2.1324 36 1 2.9032 3.8851 2.1323 37 1 5.1688 6.5398 -0.7210 38 1 5.5233 4.8730 -0.2059 39 1 4.6854 5.1692 -1.7482 40 1 3.5182 8.0331 -0.4670 41 1 3.2509 9.4300 -2.7601 42 1 2.8949 10.3098 -1.2544 43 1 1.9767 11.4923 -3.2424 44 1 1.0070 10.0531 -3.6396 45 1 0.8081 11.7413 -1.1026 46 1 -0.3981 11.6386 -2.4110 47 1 -2.6028 12.7734 -1.1048 48 1 1.1168 9.4277 0.3225 49 1 0.0751 8.0892 -0.2218 50 1 2.8967 3.8871 -2.1326 51 1 2.0851 1.5624 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008897395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:42 Heat of formation + Delta-G solvation = -13.119477 kcal Electronic energy + Delta-G solvation = -28436.954895 eV Core-core repulsion = 24721.647315 eV Total energy + Delta-G solvation = -3715.307580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.32095 -39.04166 -37.35287 -35.11762 -34.28754 -32.91020 -32.14190 -30.93317 -30.43919 -28.98039 -28.19699 -25.26867 -25.03542 -23.45677 -22.78452 -22.10907 -21.81946 -20.69980 -19.83800 -19.16176 -16.93447 -16.77058 -16.49569 -15.64654 -15.60530 -15.02145 -14.74448 -14.64229 -14.11197 -13.89709 -13.83957 -13.71132 -13.49193 -13.33757 -13.22687 -13.10961 -12.82958 -12.48133 -12.37618 -12.31606 -11.97672 -11.80391 -11.70644 -11.57516 -11.28177 -11.06468 -10.90799 -10.85874 -10.82783 -10.74922 -10.24452 -10.19523 -9.88795 -9.87464 -9.60226 -9.38637 -8.87377 -8.76210 -8.53022 -8.37696 -6.64336 -5.76284 -3.18571 1.29660 1.44629 2.89736 3.36656 3.40576 3.48368 3.53000 3.81871 4.45357 4.54055 4.64981 4.70008 4.81708 4.94272 5.01742 5.10871 5.17505 5.20180 5.31267 5.37342 5.39900 5.43250 5.47431 5.53369 5.55547 5.63707 5.66303 5.70021 5.74350 5.80018 5.90133 5.98669 6.06391 6.08507 6.10621 6.18804 6.26020 6.40694 6.54717 6.59217 6.61597 6.62713 6.71620 6.71888 6.86467 7.00382 7.03572 7.37485 7.66107 7.80288 7.86029 8.46604 8.53804 9.24769 9.86965 10.42754 11.32493 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002906 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.589136 B = 9634.536611 C =11294.134839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.068 4.068 7 C -0.073 4.073 8 H 0.102 0.898 9 C -0.139 4.139 10 C 0.513 3.487 11 O -0.526 6.526 12 N -0.723 5.723 13 C 0.127 3.873 14 H 0.085 0.915 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.143 3.857 28 C -0.079 4.079 29 C -0.120 4.120 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.393 0.607 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.019 0.981 46 H 0.089 0.911 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.056 0.944 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.071 -17.398 2.100 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.069 4.069 7 C -0.094 4.094 8 H 0.120 0.880 9 C -0.196 4.196 10 C 0.298 3.702 11 O -0.401 6.401 12 N -0.373 5.373 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.152 4.152 16 C -0.180 4.180 17 C 0.042 3.958 18 N -0.311 5.311 19 C -0.378 4.378 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.201 1.201 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.015 3.985 28 C -0.097 4.097 29 C -0.138 4.138 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.227 0.773 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.075 0.925 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.195 -17.590 1.757 23.310 hybrid contribution -0.557 0.326 0.023 0.646 sum 14.638 -17.263 1.779 22.704 Atomic orbital electron populations 1.21757 0.94692 1.01494 1.02589 1.20523 0.96263 0.92769 1.02484 1.19864 0.99126 0.96224 0.93279 1.20895 1.00812 0.94933 0.97375 1.20967 0.99637 0.94915 0.97177 1.19281 1.00176 0.93827 0.93579 1.20312 0.95319 0.92330 1.01472 0.87987 1.21779 0.94473 1.02519 1.00864 1.20374 0.87140 0.82558 0.80151 1.90756 1.27520 1.74127 1.47710 1.46136 1.24529 1.07723 1.58959 1.21717 0.89729 0.90003 0.96421 0.89718 1.21672 0.97924 0.96056 0.99573 1.22181 0.97867 0.98181 0.99722 1.20835 0.93399 0.88687 0.92906 1.44004 1.02487 1.23585 1.60998 1.19271 0.81194 0.92270 1.45105 0.91568 1.25031 0.97913 0.95887 1.00821 1.70045 1.35076 0.98525 1.51269 0.86221 0.84880 0.77763 0.77979 1.20150 1.21717 1.21531 1.21175 0.91362 0.93583 0.92348 1.20872 0.97276 0.93926 0.97588 1.20961 1.00520 0.94957 0.97406 0.92477 0.92372 0.92564 0.91241 0.91276 0.86348 0.86220 0.91719 0.91404 0.91902 0.77337 0.93157 0.92295 0.92759 0.92465 0.96320 0.89314 0.93738 0.96617 0.92495 0.86378 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.08 -0.93 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 5 C -0.11 -1.24 9.67 -39.59 -0.38 -1.63 16 6 C -0.07 -0.85 4.40 -104.62 -0.46 -1.31 16 7 C -0.07 -0.81 2.90 -92.93 -0.27 -1.07 16 8 H 0.10 0.95 7.88 -51.93 -0.41 0.54 16 9 C -0.14 -1.16 8.91 37.16 0.33 -0.83 16 10 C 0.51 7.76 6.99 -10.99 -0.08 7.68 16 11 O -0.53 -10.44 14.75 5.55 0.08 -10.36 16 12 N -0.72 -10.23 4.97 -53.69 -0.27 -10.50 16 13 C 0.13 2.28 2.60 -67.81 -0.18 2.11 16 14 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 15 C -0.11 -1.84 5.35 -26.69 -0.14 -1.98 16 16 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 17 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 18 N -0.59 -15.18 2.99 -172.32 -0.52 -15.70 16 19 C -0.25 -7.12 9.58 -15.05 -0.14 -7.26 16 20 H 0.07 1.92 7.88 -52.49 -0.41 1.51 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -26.58 11.20 55.49 0.62 -25.96 16 23 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 C 0.14 3.17 6.09 -3.71 -0.02 3.15 16 28 C -0.08 -1.01 7.92 -39.58 -0.31 -1.33 16 29 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.13 7.95 -52.49 -0.42 0.71 16 37 H 0.06 0.45 7.56 -51.93 -0.39 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.57 7.41 -51.93 -0.38 0.18 16 40 H 0.39 4.23 8.02 -40.82 -0.33 3.91 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 50 H 0.12 1.53 7.52 -52.49 -0.39 1.14 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -33.16 403.84 -10.96 -44.13 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.91 Total: 3.06 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -3.03 Total: -8.08 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.16 Total: -52.16 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.16 -10.96 -44.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.008 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds