Wall clock time and date at job start Tue Mar 31 2020 16:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46673 * 2 1 4 4 C 1.38236 * 120.00674 * 89.99740 * 3 2 1 5 5 C 1.38224 * 120.00374 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00121 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00137 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46912 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.46669 * 120.00321 * 7 6 5 10 10 C 1.50690 * 109.47437 * 240.00666 * 7 6 5 11 11 O 1.21286 * 120.00168 * 359.97438 * 10 7 6 12 12 N 1.34785 * 120.00329 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00308 * 179.97438 * 12 10 7 14 14 H 1.09004 * 109.52428 * 325.07867 * 13 12 10 15 15 C 1.53042 * 109.49730 * 205.00285 * 13 12 10 16 16 C 1.53040 * 109.52643 * 178.67908 * 15 13 12 17 17 C 1.53188 * 109.31548 * 61.36782 * 16 15 13 18 18 N 1.46927 * 108.77367 * 305.36669 * 17 16 15 19 19 C 1.36940 * 120.63011 * 233.62978 * 18 17 16 20 20 H 1.07999 * 120.00272 * 151.82560 * 19 18 17 21 21 C 1.38820 * 119.99827 * 331.82532 * 19 18 17 22 22 N 1.31615 * 119.99827 * 343.07129 * 21 19 18 23 23 Si 1.86798 * 119.99672 * 163.06924 * 21 19 18 24 24 H 1.48499 * 109.47448 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46925 * 120.00521 * 23 21 19 26 26 H 1.48507 * 109.46974 * 240.00008 * 23 21 19 27 27 C 1.46919 * 118.74305 * 53.60977 * 18 17 16 28 28 C 1.38232 * 119.99927 * 0.26178 * 6 5 4 29 29 C 1.38238 * 119.99880 * 359.45968 * 28 6 5 30 30 H 1.08998 * 109.47469 * 300.00454 * 1 2 3 31 31 H 1.09007 * 109.47166 * 60.00631 * 1 2 3 32 32 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47469 * 239.99546 * 2 1 3 34 34 H 1.09000 * 109.47332 * 119.99048 * 2 1 3 35 35 H 1.07999 * 119.99524 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00100 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.46913 * 179.97438 * 9 7 6 38 38 H 1.08996 * 109.47712 * 300.00281 * 9 7 6 39 39 H 1.09003 * 109.47205 * 60.00614 * 9 7 6 40 40 H 0.96994 * 119.99429 * 0.02562 * 12 10 7 41 41 H 1.09001 * 109.46161 * 58.66169 * 15 13 12 42 42 H 1.09002 * 109.45705 * 298.69121 * 15 13 12 43 43 H 1.09001 * 109.49694 * 181.32251 * 16 15 13 44 44 H 1.09002 * 109.49691 * 301.38380 * 16 15 13 45 45 H 1.08999 * 109.58771 * 65.15343 * 17 16 15 46 46 H 1.08997 * 109.58612 * 185.58261 * 17 16 15 47 47 H 0.97000 * 119.99811 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.59166 * 66.17409 * 27 18 17 49 49 H 1.09001 * 109.58922 * 186.46151 * 27 18 17 50 50 H 1.08002 * 120.00384 * 179.72769 * 28 6 5 51 51 H 1.08001 * 120.00197 * 180.27828 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2625 2.0727 1.1971 5 6 2.7237 3.3757 1.1970 6 6 2.9551 4.0270 -0.0002 7 6 3.4573 5.4479 -0.0003 8 1 3.5779 5.7906 1.0274 9 6 4.8057 5.5120 -0.7205 10 6 2.4652 6.3313 -0.7117 11 8 1.4504 5.8541 -1.1736 12 7 2.7061 7.6517 -0.8355 13 6 1.7419 8.5104 -1.5276 14 1 1.2859 7.9578 -2.3491 15 6 2.4603 9.7443 -2.0787 16 6 1.4600 10.6256 -2.8301 17 6 0.3694 11.0935 -1.8615 18 7 -0.2285 9.9158 -1.2179 19 6 -1.5832 9.7177 -1.2460 20 1 -1.9834 8.7154 -1.2042 21 6 -2.4421 10.8051 -1.3284 22 7 -2.0026 12.0135 -1.0476 23 14 -4.2215 10.5533 -1.8378 24 1 -4.4627 9.1112 -2.0979 25 1 -5.1185 11.0172 -0.7491 26 1 -4.4979 11.3313 -3.0722 27 6 0.6547 8.9544 -0.5439 28 6 2.7201 3.3769 -1.1973 29 6 2.2644 2.0718 -1.1972 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0821 1.5637 2.1324 36 1 2.9032 3.8851 2.1323 37 1 5.1688 6.5398 -0.7210 38 1 5.5233 4.8730 -0.2059 39 1 4.6854 5.1692 -1.7482 40 1 3.5182 8.0331 -0.4670 41 1 3.2509 9.4300 -2.7601 42 1 2.8949 10.3098 -1.2544 43 1 1.9767 11.4923 -3.2424 44 1 1.0070 10.0531 -3.6396 45 1 0.8081 11.7413 -1.1026 46 1 -0.3981 11.6386 -2.4110 47 1 -2.6028 12.7734 -1.1048 48 1 1.1168 9.4277 0.3225 49 1 0.0751 8.0892 -0.2218 50 1 2.8967 3.8871 -2.1326 51 1 2.0851 1.5624 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008897395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:41 Heat of formation + Delta-G solvation = -31.790172 kcal Electronic energy + Delta-G solvation = -28437.764517 eV Core-core repulsion = 24721.647315 eV Total energy + Delta-G solvation = -3716.117202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.42259 -40.12820 -38.92172 -36.06194 -35.87602 -34.27187 -33.35195 -32.35702 -31.79765 -30.33561 -29.21732 -27.28255 -25.88316 -24.51407 -23.88643 -23.66337 -23.15569 -21.70820 -21.23723 -20.54677 -18.73903 -18.02616 -17.56789 -17.01962 -16.64859 -16.49178 -16.02361 -15.88650 -15.64425 -15.25802 -15.03805 -14.85749 -14.64381 -14.54812 -14.27111 -14.10914 -14.03706 -13.99088 -13.69333 -13.41534 -13.20861 -13.05225 -12.79445 -12.75458 -12.57260 -12.49764 -12.30881 -12.13069 -12.01371 -11.98613 -11.76020 -11.66445 -11.63076 -11.55946 -11.31566 -10.70068 -10.63428 -10.07947 -9.75127 -9.39523 -8.71043 -7.93378 -5.39207 0.42086 0.56041 1.40965 1.42544 1.54396 1.70636 2.19174 2.48556 2.90605 3.20562 3.58567 3.68437 3.80630 3.88325 3.94774 4.03502 4.10872 4.14322 4.22609 4.25073 4.29641 4.41931 4.47093 4.50980 4.57082 4.59536 4.69802 4.71927 4.79950 4.86411 4.91374 4.94019 5.01140 5.04526 5.05626 5.11831 5.14826 5.19858 5.23834 5.27058 5.28668 5.36891 5.47325 5.54311 5.58664 5.60721 5.72668 5.74819 5.75467 6.15680 6.34457 6.66065 7.10413 7.36741 7.80125 8.29768 9.12278 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002906 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.589136 B = 9634.536611 C =11294.134839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.086 4.086 7 C -0.063 4.063 8 H 0.127 0.873 9 C -0.134 4.134 10 C 0.510 3.490 11 O -0.580 6.580 12 N -0.707 5.707 13 C 0.143 3.857 14 H 0.053 0.947 15 C -0.103 4.103 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.608 5.608 19 C -0.268 4.268 20 H 0.049 0.951 21 C -0.043 4.043 22 N -0.928 5.928 23 Si 0.965 3.035 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.282 1.282 27 C 0.146 3.854 28 C -0.098 4.098 29 C -0.136 4.136 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.415 0.585 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.006 0.994 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.024 0.976 50 H 0.106 0.894 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.275 -18.144 2.691 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.136 4.136 6 C -0.086 4.086 7 C -0.084 4.084 8 H 0.145 0.855 9 C -0.191 4.191 10 C 0.297 3.703 11 O -0.458 6.458 12 N -0.360 5.360 13 C 0.037 3.963 14 H 0.071 0.929 15 C -0.141 4.141 16 C -0.170 4.170 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.399 4.399 20 H 0.067 0.933 21 C -0.239 4.239 22 N -0.574 5.574 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.208 1.208 27 C 0.019 3.981 28 C -0.116 4.116 29 C -0.154 4.154 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.253 0.747 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.043 0.957 50 H 0.125 0.875 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.465 -18.334 2.362 25.431 hybrid contribution -1.271 0.513 -0.114 1.375 sum 16.194 -17.821 2.248 24.185 Atomic orbital electron populations 1.21753 0.94934 1.02344 1.01445 1.20565 0.95906 0.91463 1.03820 1.20192 0.98514 0.97434 0.92980 1.21245 1.00189 0.95012 0.98276 1.21287 0.99302 0.95378 0.97642 1.19514 1.00752 0.94596 0.93744 1.20343 0.95114 0.90551 1.02379 0.85532 1.21793 0.93032 1.04253 1.00038 1.21197 0.87043 0.82849 0.79212 1.90741 1.30072 1.75089 1.49936 1.45892 1.24436 1.07214 1.58410 1.21190 0.89641 0.91111 0.94395 0.92914 1.21605 0.97609 0.94339 1.00563 1.22021 0.97011 0.99715 0.98238 1.20723 0.93788 0.87809 0.93065 1.44229 1.02196 1.24723 1.62026 1.19398 0.83115 0.91775 1.45566 0.93276 1.25720 1.01637 0.95595 1.00928 1.70164 1.36286 0.99008 1.51920 0.85260 0.80263 0.77578 0.77673 1.20084 1.21277 1.20816 1.21204 0.91708 0.91658 0.93496 1.20948 0.98456 0.94612 0.97628 1.21184 1.00815 0.94944 0.98443 0.93208 0.93920 0.90725 0.90284 0.89564 0.84204 0.84201 0.89622 0.89622 0.93008 0.74720 0.89381 0.90446 0.89640 0.93622 0.97558 0.92807 0.93787 0.96103 0.95700 0.87545 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.89 71.98 0.71 -1.71 16 2 C -0.08 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.93 5.13 -19.86 -0.10 -2.03 16 4 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 5 C -0.12 -2.54 9.67 22.27 0.22 -2.33 16 6 C -0.09 -2.07 4.40 -19.86 -0.09 -2.16 16 7 C -0.06 -1.28 2.90 -12.29 -0.04 -1.31 16 8 H 0.13 1.96 7.88 -2.39 -0.02 1.94 16 9 C -0.13 -1.88 8.91 71.98 0.64 -1.24 16 10 C 0.51 15.18 6.99 87.65 0.61 15.79 16 11 O -0.58 -23.85 14.75 -3.05 -0.04 -23.90 16 12 N -0.71 -18.88 4.97 -442.16 -2.20 -21.08 16 13 C 0.14 5.10 2.60 45.07 0.12 5.21 16 14 H 0.05 2.25 7.58 -2.38 -0.02 2.23 16 15 C -0.10 -3.03 5.35 30.62 0.16 -2.87 16 16 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 17 C 0.17 8.29 5.30 86.36 0.46 8.75 16 18 N -0.61 -32.38 2.99 -699.11 -2.09 -34.47 16 19 C -0.27 -15.97 9.58 84.03 0.81 -15.16 16 20 H 0.05 3.02 7.88 -2.91 -0.02 2.99 16 21 C -0.04 -2.50 4.92 84.86 0.42 -2.08 16 22 N -0.93 -55.81 11.20 21.65 0.24 -55.57 16 23 Si 0.96 47.06 29.59 68.60 2.03 49.09 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 C 0.15 6.64 6.09 86.36 0.53 7.17 16 28 C -0.10 -2.60 7.92 22.27 0.18 -2.42 16 29 C -0.14 -3.25 9.70 22.27 0.22 -3.04 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 34 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.14 2.32 7.95 -2.91 -0.02 2.29 16 37 H 0.08 0.84 7.56 -2.39 -0.02 0.82 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.86 7.41 -2.39 -0.02 0.84 16 40 H 0.42 7.51 8.02 -92.71 -0.74 6.77 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 43 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.05 2.96 6.06 -2.39 -0.01 2.95 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.02 1.25 7.93 -2.39 -0.02 1.23 16 50 H 0.11 2.93 7.52 -2.91 -0.02 2.91 16 51 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -76.51 403.84 3.51 -73.00 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.15 Total: 20.36 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 5.42 Total: -7.43 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.05 Total: -111.12 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.51 3.51 -73.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.213 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds