Wall clock time and date at job start Tue Mar 31 2020 16:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50707 * 109.46779 * 2 1 4 4 C 1.38233 * 119.99846 * 89.99852 * 3 2 1 5 5 C 1.38239 * 119.99876 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99853 * 359.95804 * 5 4 3 7 7 C 1.50693 * 119.99739 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47461 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47182 * 239.99751 * 7 6 5 10 10 C 1.50704 * 109.47029 * 120.00144 * 7 6 5 11 11 O 1.21277 * 119.99849 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00119 * 179.97438 * 10 7 6 13 13 C 1.46494 * 120.00344 * 180.02562 * 12 10 7 14 14 H 1.09002 * 109.49715 * 325.06767 * 13 12 10 15 15 C 1.53037 * 109.50130 * 204.99929 * 13 12 10 16 16 C 1.53039 * 109.53895 * 178.68255 * 15 13 12 17 17 C 1.53185 * 109.31802 * 61.36600 * 16 15 13 18 18 N 1.46935 * 108.77204 * 305.36561 * 17 16 15 19 19 C 1.36930 * 120.62884 * 233.58086 * 18 17 16 20 20 H 1.07996 * 119.99963 * 152.75211 * 19 18 17 21 21 C 1.38811 * 120.00287 * 332.47546 * 19 18 17 22 22 N 1.31620 * 120.00346 * 159.46661 * 21 19 18 23 23 Si 1.86804 * 119.99785 * 339.46996 * 21 19 18 24 24 H 1.48498 * 109.47348 * 92.84309 * 23 21 19 25 25 H 1.48503 * 109.46839 * 212.83990 * 23 21 19 26 26 H 1.48501 * 109.46920 * 332.83778 * 23 21 19 27 27 C 1.46925 * 118.73580 * 53.86058 * 18 17 16 28 28 C 1.38232 * 119.99798 * 0.27485 * 6 5 4 29 29 C 1.38237 * 119.99603 * 269.97529 * 3 2 1 30 30 H 1.08996 * 109.47288 * 300.00073 * 1 2 3 31 31 H 1.08996 * 109.46968 * 60.00454 * 1 2 3 32 32 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46928 * 240.00283 * 2 1 3 34 34 H 1.08996 * 109.46968 * 119.99546 * 2 1 3 35 35 H 1.07999 * 119.99870 * 359.97438 * 4 3 2 36 36 H 1.07997 * 119.99636 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.46482 * 60.00134 * 9 7 6 38 38 H 1.09003 * 109.47017 * 180.02562 * 9 7 6 39 39 H 1.08994 * 109.47269 * 300.00542 * 9 7 6 40 40 H 0.97003 * 120.00164 * 359.97438 * 12 10 7 41 41 H 1.09004 * 109.45996 * 58.66049 * 15 13 12 42 42 H 1.08999 * 109.44696 * 298.69636 * 15 13 12 43 43 H 1.09002 * 109.49429 * 301.40692 * 16 15 13 44 44 H 1.09003 * 109.52201 * 181.33236 * 16 15 13 45 45 H 1.08992 * 109.59454 * 185.57413 * 17 16 15 46 46 H 1.09004 * 109.70171 * 65.21511 * 17 16 15 47 47 H 0.96998 * 120.00082 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.59147 * 65.92816 * 27 18 17 49 49 H 1.09006 * 109.58424 * 186.35109 * 27 18 17 50 50 H 1.08000 * 119.99991 * 179.72893 * 28 6 5 51 51 H 1.07994 * 120.00073 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3757 1.1972 6 6 2.9556 4.0269 0.0000 7 6 3.4589 5.4473 0.0000 8 1 3.5799 5.7899 1.0276 9 6 2.4523 6.3451 -0.7222 10 6 4.7870 5.5096 -0.7095 11 8 5.2767 4.4999 -1.1694 12 7 5.4305 6.6874 -0.8329 13 6 6.7212 6.7481 -1.5231 14 1 7.2831 5.8353 -1.3249 15 6 7.5142 7.9557 -1.0183 16 6 8.8761 8.0013 -1.7148 17 6 8.6682 8.1564 -3.2246 18 7 7.7863 7.0788 -3.6936 19 6 8.1662 6.2673 -4.7290 20 1 7.7812 5.2604 -4.7952 21 6 9.0415 6.7407 -5.6968 22 7 9.7196 5.8936 -6.4418 23 14 9.2572 8.5800 -5.9416 24 1 10.3964 9.0588 -5.1182 25 1 9.5298 8.8600 -7.3743 26 1 8.0166 9.2833 -5.5272 27 6 6.4864 6.8925 -3.0344 28 6 2.7206 3.3768 -1.1971 29 6 2.2631 2.0723 -1.1972 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.0822 1.5635 2.1324 36 1 2.9034 3.8849 2.1325 37 1 1.4917 6.2999 -0.2090 38 1 2.8166 7.3724 -0.7226 39 1 2.3316 6.0023 -1.7498 40 1 5.0386 7.4950 -0.4654 41 1 7.6597 7.8702 0.0586 42 1 6.9628 8.8698 -1.2387 43 1 9.4179 7.0768 -1.5151 44 1 9.4499 8.8479 -1.3378 45 1 9.6292 8.0901 -3.7346 46 1 8.2087 9.1222 -3.4349 47 1 10.3310 6.2245 -7.1183 48 1 5.8516 7.7573 -3.2274 49 1 6.0075 5.9920 -3.4189 50 1 2.8975 3.8870 -2.1324 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008897398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:46 Heat of formation + Delta-G solvation = -6.764123 kcal Electronic energy + Delta-G solvation = -28479.029045 eV Core-core repulsion = 24763.997054 eV Total energy + Delta-G solvation = -3715.031991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.36298 -39.10682 -37.62073 -35.15945 -34.42249 -32.93785 -32.26642 -30.93408 -30.82823 -29.31170 -28.41348 -25.30087 -25.08552 -23.62541 -22.79800 -22.26254 -21.94490 -20.79197 -19.91758 -19.44874 -17.00763 -16.85455 -16.52471 -15.71102 -15.58937 -15.33029 -14.94862 -14.82057 -14.15323 -13.93356 -13.88435 -13.86873 -13.72286 -13.46280 -13.21587 -13.17128 -12.88367 -12.62072 -12.57735 -12.35292 -12.11948 -12.01463 -11.73755 -11.58451 -11.52418 -11.30644 -11.13113 -10.91139 -10.86168 -10.84086 -10.74404 -10.15803 -9.97178 -9.73997 -9.55838 -9.42378 -8.95774 -8.86605 -8.54436 -8.49173 -6.95146 -5.91243 -3.27831 1.28936 1.44317 2.83873 3.29936 3.32537 3.48826 3.51674 3.80260 4.43586 4.54876 4.61867 4.67592 4.78760 4.93719 4.98001 5.03329 5.07562 5.13783 5.16853 5.22158 5.28717 5.35422 5.41631 5.43562 5.46620 5.52631 5.53127 5.64265 5.68085 5.78414 5.83326 5.91761 5.93282 5.95850 6.02664 6.05403 6.08413 6.20100 6.31229 6.40125 6.43800 6.57024 6.59803 6.61056 6.63835 6.65565 6.79989 6.95343 7.00317 7.71617 7.99470 8.36957 8.46422 8.97613 9.74863 10.10828 11.24793 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002662 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.141975 B =10515.744348 C =11454.434234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.070 4.070 7 C -0.071 4.071 8 H 0.100 0.900 9 C -0.140 4.140 10 C 0.513 3.487 11 O -0.522 6.522 12 N -0.724 5.724 13 C 0.125 3.875 14 H 0.090 0.910 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.122 3.878 18 N -0.602 5.602 19 C -0.258 4.258 20 H 0.086 0.914 21 C 0.023 3.977 22 N -0.908 5.908 23 Si 0.883 3.117 24 H -0.288 1.288 25 H -0.303 1.303 26 H -0.272 1.272 27 C 0.146 3.854 28 C -0.078 4.078 29 C -0.118 4.118 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.394 0.606 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.022 0.978 49 H 0.066 0.934 50 H 0.121 0.879 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.995 -1.495 18.160 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.141 4.141 5 C -0.129 4.129 6 C -0.070 4.070 7 C -0.092 4.092 8 H 0.118 0.882 9 C -0.198 4.198 10 C 0.297 3.703 11 O -0.397 6.397 12 N -0.375 5.375 13 C 0.020 3.980 14 H 0.108 0.892 15 C -0.154 4.154 16 C -0.172 4.172 17 C -0.003 4.003 18 N -0.326 5.326 19 C -0.386 4.386 20 H 0.104 0.896 21 C -0.176 4.176 22 N -0.551 5.551 23 Si 0.713 3.287 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.197 1.197 27 C 0.019 3.981 28 C -0.096 4.096 29 C -0.136 4.136 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.227 0.773 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.085 0.915 50 H 0.139 0.861 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.515 -2.290 17.649 24.970 hybrid contribution 0.167 1.521 -0.039 1.531 sum -17.348 -0.769 17.610 24.732 Atomic orbital electron populations 1.21741 0.94860 1.01524 1.02148 1.20540 0.96026 0.92894 1.02814 1.19864 0.99256 0.96048 0.93270 1.20881 1.01098 0.94794 0.97333 1.20935 0.99987 0.94933 0.97043 1.19272 0.99749 0.94388 0.93586 1.20297 0.93402 0.94307 1.01234 0.88163 1.21794 0.98337 0.98547 1.01112 1.20414 0.86213 0.83590 0.80045 1.90775 1.67117 1.34209 1.47575 1.46098 1.22860 1.09689 1.58891 1.21768 0.82672 0.99536 0.94035 0.89232 1.21675 0.97106 0.97456 0.99144 1.21993 0.95628 1.01741 0.97790 1.21392 0.95451 0.91061 0.92443 1.44306 1.14036 1.36716 1.37505 1.18950 1.25520 0.94373 0.99747 0.89603 1.25284 0.98332 0.97268 0.96707 1.69844 1.26974 1.33639 1.24606 0.86950 0.77917 0.87929 0.75860 1.21615 1.23177 1.19677 1.21293 0.87859 0.99380 0.89611 1.20928 0.96361 0.94569 0.97710 1.20996 1.00288 0.94851 0.97491 0.92670 0.92542 0.92551 0.91023 0.91199 0.86417 0.86366 0.91402 0.91704 0.91624 0.77291 0.92500 0.92157 0.91406 0.92270 0.90788 0.95688 0.92787 0.96057 0.91543 0.86147 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.90 37.16 0.37 -0.68 16 2 C -0.09 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.08 -0.92 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.11 -1.20 9.67 -39.58 -0.38 -1.59 16 6 C -0.07 -0.84 4.39 -104.63 -0.46 -1.30 16 7 C -0.07 -0.75 2.90 -92.92 -0.27 -1.02 16 8 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 9 C -0.14 -1.20 8.90 37.16 0.33 -0.87 16 10 C 0.51 7.44 7.00 -10.98 -0.08 7.36 16 11 O -0.52 -10.16 14.79 5.56 0.08 -10.08 16 12 N -0.72 -9.56 4.97 -53.47 -0.27 -9.82 16 13 C 0.13 2.12 2.62 -67.59 -0.18 1.94 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 C -0.12 -1.69 5.35 -26.69 -0.14 -1.84 16 16 C -0.13 -2.27 6.08 -26.62 -0.16 -2.43 16 17 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 18 N -0.60 -14.66 2.76 -172.05 -0.48 -15.13 16 19 C -0.26 -7.45 10.03 -15.06 -0.15 -7.61 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 21 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 22 N -0.91 -28.45 13.97 55.49 0.78 -27.67 16 23 Si 0.88 22.59 24.34 -169.99 -4.14 18.45 16 24 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.27 -6.80 6.63 56.52 0.37 -6.42 16 27 C 0.15 3.00 6.12 -3.48 -0.02 2.98 16 28 C -0.08 -1.02 7.94 -39.58 -0.31 -1.34 16 29 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.01 7.95 -52.49 -0.42 0.60 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.46 7.56 -51.93 -0.39 0.06 16 39 H 0.06 0.64 7.37 -51.93 -0.38 0.26 16 40 H 0.39 3.81 8.02 -40.82 -0.33 3.48 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.77 4.51 -51.93 -0.23 1.54 16 46 H 0.03 0.53 7.06 -51.93 -0.37 0.17 16 47 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 50 H 0.12 1.66 7.52 -52.49 -0.39 1.27 16 51 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -34.38 397.44 -9.90 -44.28 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.83 Total: 2.99 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.04 Total: -9.00 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.03 Total: -52.63 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.14 Total: 18.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.38 -9.90 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.518 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds