Wall clock time and date at job start Tue Mar 31 2020 16:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50707 * 109.46779 * 2 1 4 4 C 1.38233 * 119.99846 * 89.99852 * 3 2 1 5 5 C 1.38239 * 119.99876 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99853 * 359.95804 * 5 4 3 7 7 C 1.50693 * 119.99739 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47461 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47182 * 239.99751 * 7 6 5 10 10 C 1.50704 * 109.47029 * 120.00144 * 7 6 5 11 11 O 1.21277 * 119.99849 * 359.97438 * 10 7 6 12 12 N 1.34776 * 120.00119 * 179.97438 * 10 7 6 13 13 C 1.46494 * 120.00344 * 180.02562 * 12 10 7 14 14 H 1.09002 * 109.49715 * 325.06767 * 13 12 10 15 15 C 1.53037 * 109.50130 * 204.99929 * 13 12 10 16 16 C 1.53039 * 109.53895 * 178.68255 * 15 13 12 17 17 C 1.53185 * 109.31802 * 61.36600 * 16 15 13 18 18 N 1.46935 * 108.77204 * 305.36561 * 17 16 15 19 19 C 1.36930 * 120.62884 * 233.58086 * 18 17 16 20 20 H 1.07996 * 119.99963 * 152.75211 * 19 18 17 21 21 C 1.38811 * 120.00287 * 332.47546 * 19 18 17 22 22 N 1.31620 * 120.00346 * 159.46661 * 21 19 18 23 23 Si 1.86804 * 119.99785 * 339.46996 * 21 19 18 24 24 H 1.48498 * 109.47348 * 92.84309 * 23 21 19 25 25 H 1.48503 * 109.46839 * 212.83990 * 23 21 19 26 26 H 1.48501 * 109.46920 * 332.83778 * 23 21 19 27 27 C 1.46925 * 118.73580 * 53.86058 * 18 17 16 28 28 C 1.38232 * 119.99798 * 0.27485 * 6 5 4 29 29 C 1.38237 * 119.99603 * 269.97529 * 3 2 1 30 30 H 1.08996 * 109.47288 * 300.00073 * 1 2 3 31 31 H 1.08996 * 109.46968 * 60.00454 * 1 2 3 32 32 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46928 * 240.00283 * 2 1 3 34 34 H 1.08996 * 109.46968 * 119.99546 * 2 1 3 35 35 H 1.07999 * 119.99870 * 359.97438 * 4 3 2 36 36 H 1.07997 * 119.99636 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.46482 * 60.00134 * 9 7 6 38 38 H 1.09003 * 109.47017 * 180.02562 * 9 7 6 39 39 H 1.08994 * 109.47269 * 300.00542 * 9 7 6 40 40 H 0.97003 * 120.00164 * 359.97438 * 12 10 7 41 41 H 1.09004 * 109.45996 * 58.66049 * 15 13 12 42 42 H 1.08999 * 109.44696 * 298.69636 * 15 13 12 43 43 H 1.09002 * 109.49429 * 301.40692 * 16 15 13 44 44 H 1.09003 * 109.52201 * 181.33236 * 16 15 13 45 45 H 1.08992 * 109.59454 * 185.57413 * 17 16 15 46 46 H 1.09004 * 109.70171 * 65.21511 * 17 16 15 47 47 H 0.96998 * 120.00082 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.59147 * 65.92816 * 27 18 17 49 49 H 1.09006 * 109.58424 * 186.35109 * 27 18 17 50 50 H 1.08000 * 119.99991 * 179.72893 * 28 6 5 51 51 H 1.07994 * 120.00073 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3757 1.1972 6 6 2.9556 4.0269 0.0000 7 6 3.4589 5.4473 0.0000 8 1 3.5799 5.7899 1.0276 9 6 2.4523 6.3451 -0.7222 10 6 4.7870 5.5096 -0.7095 11 8 5.2767 4.4999 -1.1694 12 7 5.4305 6.6874 -0.8329 13 6 6.7212 6.7481 -1.5231 14 1 7.2831 5.8353 -1.3249 15 6 7.5142 7.9557 -1.0183 16 6 8.8761 8.0013 -1.7148 17 6 8.6682 8.1564 -3.2246 18 7 7.7863 7.0788 -3.6936 19 6 8.1662 6.2673 -4.7290 20 1 7.7812 5.2604 -4.7952 21 6 9.0415 6.7407 -5.6968 22 7 9.7196 5.8936 -6.4418 23 14 9.2572 8.5800 -5.9416 24 1 10.3964 9.0588 -5.1182 25 1 9.5298 8.8600 -7.3743 26 1 8.0166 9.2833 -5.5272 27 6 6.4864 6.8925 -3.0344 28 6 2.7206 3.3768 -1.1971 29 6 2.2631 2.0723 -1.1972 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.0822 1.5635 2.1324 36 1 2.9034 3.8849 2.1325 37 1 1.4917 6.2999 -0.2090 38 1 2.8166 7.3724 -0.7226 39 1 2.3316 6.0023 -1.7498 40 1 5.0386 7.4950 -0.4654 41 1 7.6597 7.8702 0.0586 42 1 6.9628 8.8698 -1.2387 43 1 9.4179 7.0768 -1.5151 44 1 9.4499 8.8479 -1.3378 45 1 9.6292 8.0901 -3.7346 46 1 8.2087 9.1222 -3.4349 47 1 10.3310 6.2245 -7.1183 48 1 5.8516 7.7573 -3.2274 49 1 6.0075 5.9920 -3.4189 50 1 2.8975 3.8870 -2.1324 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008897398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:45 Heat of formation + Delta-G solvation = -28.606361 kcal Electronic energy + Delta-G solvation = -28479.976196 eV Core-core repulsion = 24763.997054 eV Total energy + Delta-G solvation = -3715.979142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.44315 -40.17787 -39.09584 -36.09783 -35.91078 -34.37336 -33.44626 -32.68802 -31.80633 -30.68369 -29.27708 -27.23612 -25.92998 -24.71030 -23.74492 -23.68777 -23.39324 -21.74521 -21.35022 -20.64041 -18.81351 -18.07600 -17.65142 -17.27423 -16.71717 -16.48243 -16.22828 -15.88321 -15.64193 -15.40591 -15.13982 -14.87161 -14.69391 -14.56499 -14.52003 -14.33748 -14.09809 -13.98975 -13.74696 -13.35607 -13.32271 -13.30633 -12.92460 -12.79466 -12.61079 -12.50511 -12.43937 -12.28000 -12.02057 -11.84986 -11.68118 -11.65524 -11.62026 -11.49455 -11.36926 -10.87986 -10.65391 -10.13086 -9.76337 -9.40343 -8.94158 -8.20267 -5.54344 0.41448 0.55012 1.27973 1.39783 1.50384 1.69312 2.18222 2.38959 2.89069 3.03353 3.34562 3.58616 3.77694 3.86014 3.93322 4.00858 4.03292 4.09495 4.13468 4.21435 4.28472 4.32409 4.41321 4.43665 4.51756 4.58143 4.64204 4.69369 4.69872 4.72623 4.85297 4.91505 4.92668 4.99110 5.03811 5.05697 5.08324 5.10482 5.18198 5.20359 5.22715 5.27941 5.37779 5.40509 5.53759 5.57401 5.72057 5.75013 5.81803 6.07670 6.15003 6.65356 6.87541 7.37242 7.57516 7.95122 9.00362 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002662 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.141975 B =10515.744348 C =11454.434234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.060 4.060 8 H 0.138 0.862 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.581 6.581 12 N -0.706 5.706 13 C 0.139 3.861 14 H 0.048 0.952 15 C -0.105 4.105 16 C -0.127 4.127 17 C 0.113 3.887 18 N -0.618 5.618 19 C -0.256 4.256 20 H 0.032 0.968 21 C -0.039 4.039 22 N -0.960 5.960 23 Si 0.961 3.039 24 H -0.266 1.266 25 H -0.310 1.310 26 H -0.256 1.256 27 C 0.147 3.853 28 C -0.102 4.102 29 C -0.139 4.139 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.418 0.582 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.099 0.901 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.263 0.737 48 H 0.044 0.956 49 H 0.025 0.975 50 H 0.097 0.903 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.333 1.853 22.048 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.131 4.131 6 C -0.086 4.086 7 C -0.081 4.081 8 H 0.155 0.845 9 C -0.194 4.194 10 C 0.295 3.705 11 O -0.460 6.460 12 N -0.359 5.359 13 C 0.032 3.968 14 H 0.066 0.934 15 C -0.143 4.143 16 C -0.166 4.166 17 C -0.011 4.011 18 N -0.343 5.343 19 C -0.386 4.386 20 H 0.050 0.950 21 C -0.233 4.233 22 N -0.606 5.606 23 Si 0.788 3.212 24 H -0.192 1.192 25 H -0.239 1.239 26 H -0.180 1.180 27 C 0.020 3.980 28 C -0.120 4.120 29 C -0.157 4.157 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.256 0.744 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.115 0.885 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.897 1.118 21.605 28.725 hybrid contribution 0.538 0.316 -1.245 1.392 sum -18.359 1.434 20.361 27.453 Atomic orbital electron populations 1.21709 0.93741 1.02422 1.01982 1.20592 0.96943 0.91456 1.03271 1.20170 0.98702 0.97155 0.92967 1.21268 1.00199 0.94933 0.98088 1.21307 0.99032 0.95152 0.97566 1.19522 1.00043 0.95446 0.93572 1.20339 0.90943 0.94082 1.02686 0.84475 1.21813 0.98825 0.99024 0.99776 1.21254 0.87207 0.82867 0.79142 1.90765 1.68794 1.36421 1.50019 1.45838 1.21500 1.10575 1.57944 1.21296 0.84353 0.99395 0.91754 0.93371 1.21640 0.95151 0.96807 1.00662 1.21926 0.97676 1.02386 0.94656 1.21556 0.93656 0.90514 0.95360 1.44378 1.16007 1.37004 1.36940 1.18750 1.25038 0.93159 1.01656 0.95010 1.26040 0.98177 1.02672 0.96426 1.70004 1.28459 1.36231 1.25928 0.85707 0.79090 0.80996 0.75419 1.19183 1.23908 1.18003 1.21360 0.86432 0.98246 0.91920 1.20930 0.98006 0.95362 0.97704 1.21151 1.01218 0.94896 0.98466 0.92189 0.93344 0.91117 0.91418 0.89894 0.83784 0.83388 0.89417 0.89473 0.93891 0.74432 0.89046 0.89208 0.93553 0.88290 0.93328 0.93666 0.92779 0.93783 0.95655 0.88477 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.90 71.98 0.71 -1.17 16 2 C -0.09 -1.39 6.06 29.85 0.18 -1.21 16 3 C -0.09 -1.94 5.13 -19.86 -0.10 -2.05 16 4 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 5 C -0.11 -2.22 9.67 22.27 0.22 -2.00 16 6 C -0.09 -2.03 4.39 -19.87 -0.09 -2.12 16 7 C -0.06 -1.14 2.90 -12.29 -0.04 -1.18 16 8 H 0.14 1.65 7.88 -2.39 -0.02 1.63 16 9 C -0.14 -2.04 8.90 71.98 0.64 -1.40 16 10 C 0.51 14.61 7.00 87.66 0.61 15.22 16 11 O -0.58 -24.03 14.79 -3.02 -0.04 -24.08 16 12 N -0.71 -17.21 4.97 -441.48 -2.19 -19.40 16 13 C 0.14 4.58 2.62 45.22 0.12 4.69 16 14 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 15 C -0.10 -2.62 5.35 30.62 0.16 -2.46 16 16 C -0.13 -3.97 6.08 30.67 0.19 -3.79 16 17 C 0.11 4.69 4.20 86.36 0.36 5.06 16 18 N -0.62 -30.66 2.76 -698.25 -1.93 -32.59 16 19 C -0.26 -15.73 10.03 84.03 0.84 -14.89 16 20 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 21 C -0.04 -2.37 5.23 84.86 0.44 -1.93 16 22 N -0.96 -63.28 13.97 21.65 0.30 -62.98 16 23 Si 0.96 47.32 24.34 68.60 1.67 48.99 16 24 H -0.27 -12.05 6.62 99.48 0.66 -11.39 16 25 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 26 H -0.26 -11.82 6.63 99.48 0.66 -11.16 16 27 C 0.15 6.15 6.12 86.51 0.53 6.68 16 28 C -0.10 -2.89 7.94 22.27 0.18 -2.71 16 29 C -0.14 -3.62 9.70 22.27 0.22 -3.41 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 34 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 1.95 7.95 -2.91 -0.02 1.93 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.90 7.56 -2.39 -0.02 0.88 16 39 H 0.04 0.84 7.37 -2.39 -0.02 0.82 16 40 H 0.42 6.24 8.02 -92.71 -0.74 5.50 16 41 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 2.25 4.51 -2.39 -0.01 2.24 16 46 H 0.05 1.72 7.06 -2.38 -0.02 1.70 16 47 H 0.26 16.29 8.31 -92.71 -0.77 15.51 16 48 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.02 1.23 7.93 -2.38 -0.02 1.21 16 50 H 0.10 3.07 7.52 -2.91 -0.02 3.05 16 51 H 0.12 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -83.57 397.44 3.26 -80.30 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.06 Total: 20.64 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.40 Total: -10.88 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.82 Total: -114.97 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.67 Total: 48.99 kcal Total: -83.57 3.26 -80.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.695 kcal (2) G-P(sol) polarization free energy of solvation -83.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds