Wall clock time and date at job start Tue Mar 31 2020 16:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50699 * 109.46740 * 2 1 4 4 C 1.38233 * 120.00435 * 90.00501 * 3 2 1 5 5 C 1.38229 * 120.00582 * 180.02562 * 4 3 2 6 6 C 1.38239 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00338 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46913 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47367 * 240.00394 * 7 6 5 10 10 C 1.50690 * 109.47390 * 119.99971 * 7 6 5 11 11 O 1.21278 * 120.00184 * 0.02562 * 10 7 6 12 12 N 1.34784 * 120.00299 * 180.02562 * 10 7 6 13 13 C 1.46495 * 120.00291 * 180.02562 * 12 10 7 14 14 H 1.09004 * 109.49794 * 34.93561 * 13 12 10 15 15 C 1.53033 * 109.49745 * 154.99925 * 13 12 10 16 16 C 1.53045 * 109.54030 * 181.34799 * 15 13 12 17 17 C 1.53191 * 109.31400 * 298.63884 * 16 15 13 18 18 N 1.46928 * 108.77557 * 54.62787 * 17 16 15 19 19 C 1.36939 * 120.62907 * 126.36988 * 18 17 16 20 20 H 1.08004 * 120.00193 * 332.50885 * 19 18 17 21 21 C 1.38805 * 120.00142 * 152.50281 * 19 18 17 22 22 N 1.31627 * 120.00040 * 335.03066 * 21 19 18 23 23 Si 1.86805 * 120.00321 * 155.03039 * 21 19 18 24 24 H 1.48497 * 109.46928 * 59.99734 * 23 21 19 25 25 H 1.48500 * 109.46770 * 300.00395 * 23 21 19 26 26 H 1.48492 * 109.47261 * 180.02562 * 23 21 19 27 27 C 1.46922 * 118.74004 * 306.64952 * 18 17 16 28 28 C 1.38236 * 119.99599 * 0.25467 * 6 5 4 29 29 C 1.38232 * 120.00141 * 359.49568 * 28 6 5 30 30 H 1.09005 * 109.46503 * 299.99763 * 1 2 3 31 31 H 1.08997 * 109.47364 * 59.99980 * 1 2 3 32 32 H 1.08995 * 109.46782 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46899 * 240.00395 * 2 1 3 34 34 H 1.08997 * 109.47364 * 120.00020 * 2 1 3 35 35 H 1.08005 * 119.99295 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.00177 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47034 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.46500 * 300.00048 * 9 7 6 39 39 H 1.09002 * 109.47058 * 59.99132 * 9 7 6 40 40 H 0.97006 * 119.99419 * 0.02562 * 12 10 7 41 41 H 1.08999 * 109.46474 * 61.32943 * 15 13 12 42 42 H 1.09000 * 109.46479 * 301.36923 * 15 13 12 43 43 H 1.08996 * 109.50007 * 178.68408 * 16 15 13 44 44 H 1.08998 * 109.49409 * 58.58669 * 16 15 13 45 45 H 1.09004 * 109.58295 * 294.84849 * 17 16 15 46 46 H 1.08995 * 109.58536 * 174.41934 * 17 16 15 47 47 H 0.96999 * 119.99790 * 354.25710 * 22 21 19 48 48 H 1.08997 * 109.58703 * 173.14589 * 27 18 17 49 49 H 1.09000 * 109.58443 * 293.56442 * 27 18 17 50 50 H 1.08003 * 119.99452 * 179.72214 * 28 6 5 51 51 H 1.08003 * 119.99851 * 180.22894 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9532 4.0277 -0.0001 7 6 3.4544 5.4489 -0.0001 8 1 3.5744 5.7919 1.0276 9 6 2.4460 6.3453 -0.7218 10 6 4.7820 5.5134 -0.7100 11 8 5.2728 4.5048 -1.1711 12 7 5.4241 6.6921 -0.8327 13 6 6.7145 6.7549 -1.5234 14 1 6.7225 6.0389 -2.3452 15 6 6.9312 8.1664 -2.0736 16 6 8.2636 8.2242 -2.8242 17 6 9.4055 7.9025 -1.8551 18 7 9.1304 6.6102 -1.2124 19 6 10.0600 5.6050 -1.2407 20 1 10.7704 5.5491 -2.0523 21 6 10.0894 4.6581 -0.2263 22 7 9.6118 4.9538 0.9641 23 14 10.8066 2.9639 -0.5504 24 1 12.2284 3.0980 -0.9573 25 1 10.0411 2.3020 -1.6371 26 1 10.7199 2.1450 0.6853 27 6 7.8366 6.4146 -0.5443 28 6 2.7183 3.3776 -1.1972 29 6 2.2630 2.0724 -1.1972 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 2.0825 1.5635 2.1324 36 1 2.9026 3.8852 2.1324 37 1 2.8083 7.3733 -0.7214 38 1 2.3255 6.0024 -1.7494 39 1 1.4857 6.2985 -0.2083 40 1 5.0317 7.4988 -0.4636 41 1 6.9478 8.8791 -1.2490 42 1 6.1191 8.4191 -2.7553 43 1 8.4063 9.2234 -3.2357 44 1 8.2570 7.4944 -3.6338 45 1 9.4706 8.6817 -1.0956 46 1 10.3454 7.8449 -2.4040 47 1 9.3161 5.8572 1.1573 48 1 7.7417 5.3757 -0.2286 49 1 7.7712 7.0700 0.3242 50 1 2.8939 3.8884 -2.1325 51 1 2.0830 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008897399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:51 Heat of formation + Delta-G solvation = -14.411370 kcal Electronic energy + Delta-G solvation = -28837.386355 eV Core-core repulsion = 25122.022754 eV Total energy + Delta-G solvation = -3715.363601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.21715 -38.97638 -37.47553 -35.04000 -34.25553 -33.01241 -32.46579 -30.82826 -29.84478 -29.11824 -28.27670 -25.12231 -24.95609 -23.43087 -22.68250 -22.08945 -21.83997 -20.63691 -19.74829 -19.16222 -17.35307 -16.84159 -16.47187 -15.59140 -15.50700 -14.90158 -14.79281 -14.28669 -14.10681 -13.89149 -13.84431 -13.66627 -13.55820 -13.39091 -13.31750 -13.08531 -12.64146 -12.55150 -12.42899 -12.30827 -12.03071 -11.88784 -11.64010 -11.49572 -11.23984 -11.09320 -10.86350 -10.76076 -10.72577 -10.60897 -10.34470 -10.22696 -9.99948 -9.82477 -9.37917 -9.27744 -8.76006 -8.59359 -8.42453 -8.29417 -6.83396 -6.00911 -3.17512 1.40562 1.55535 3.03258 3.45444 3.55430 3.63888 3.78589 3.91974 4.55038 4.66948 4.74124 4.76790 4.88937 5.03338 5.09793 5.17094 5.24764 5.25111 5.27404 5.36512 5.40716 5.43392 5.50392 5.53710 5.58793 5.61786 5.62827 5.72892 5.75266 5.86155 5.95849 5.97470 5.99614 6.05533 6.13729 6.18614 6.21267 6.32325 6.37133 6.51325 6.58080 6.69167 6.69823 6.72490 6.78733 6.87916 7.05695 7.11385 7.32242 7.88897 8.06841 8.61325 8.66589 9.16219 9.90201 10.33007 11.27482 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003475 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.835166 B = 8056.654370 C = 9759.921920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.108 4.108 6 C -0.066 4.066 7 C -0.073 4.073 8 H 0.102 0.898 9 C -0.138 4.138 10 C 0.513 3.487 11 O -0.520 6.520 12 N -0.723 5.723 13 C 0.124 3.876 14 H 0.083 0.917 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.145 3.855 18 N -0.595 5.595 19 C -0.353 4.353 20 H 0.056 0.944 21 C -0.019 4.019 22 N -0.911 5.911 23 Si 1.062 2.938 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.146 3.854 28 C -0.080 4.080 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.392 0.608 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.057 0.943 47 H 0.267 0.733 48 H 0.086 0.914 49 H 0.014 0.986 50 H 0.117 0.883 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.782 1.187 -2.018 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.139 4.139 5 C -0.126 4.126 6 C -0.067 4.067 7 C -0.094 4.094 8 H 0.120 0.880 9 C -0.195 4.195 10 C 0.297 3.703 11 O -0.394 6.394 12 N -0.375 5.375 13 C 0.019 3.981 14 H 0.101 0.899 15 C -0.153 4.153 16 C -0.171 4.171 17 C 0.018 3.982 18 N -0.319 5.319 19 C -0.482 4.482 20 H 0.074 0.926 21 C -0.221 4.221 22 N -0.551 5.551 23 Si 0.891 3.109 24 H -0.220 1.220 25 H -0.219 1.219 26 H -0.211 1.211 27 C 0.019 3.981 28 C -0.098 4.098 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.225 0.775 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.104 0.896 49 H 0.032 0.968 50 H 0.135 0.865 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.107 -1.084 -1.694 19.213 hybrid contribution -0.278 2.060 -0.483 2.134 sum -19.385 0.976 -2.177 19.531 Atomic orbital electron populations 1.21740 0.94934 1.01440 1.02095 1.20531 0.95931 0.92952 1.02824 1.19838 0.99427 0.95990 0.93281 1.20895 1.00881 0.94752 0.97373 1.20974 0.99454 0.94948 0.97211 1.19266 0.99389 0.94442 0.93593 1.20309 0.93396 0.94237 1.01488 0.87999 1.21772 0.98408 0.98520 1.00822 1.20356 0.86058 0.83639 0.80219 1.90775 1.67299 1.33978 1.47389 1.46086 1.22467 1.09645 1.59259 1.21688 0.82564 0.97017 0.96844 0.89865 1.21667 0.97874 0.96265 0.99534 1.22000 0.95590 1.00274 0.99250 1.20944 0.95430 0.88179 0.93602 1.44031 1.12402 1.10254 1.65209 1.19918 1.14063 1.07293 1.06916 0.92611 1.25822 1.00088 1.04410 0.91803 1.70790 1.42259 1.22869 1.19180 0.83581 0.75410 0.76228 0.75634 1.21987 1.21891 1.21061 1.21175 0.83413 1.01618 0.91880 1.20852 0.96830 0.94588 0.97509 1.20936 1.00676 0.94816 0.97365 0.92646 0.92637 0.92604 0.91120 0.91127 0.86341 0.86202 0.91830 0.91942 0.91442 0.77527 0.92304 0.92859 0.92516 0.92049 0.96587 0.92490 0.92207 0.89590 0.96848 0.86472 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.09 -0.82 6.06 -27.88 -0.17 -0.99 16 3 C -0.09 -1.05 5.13 -104.62 -0.54 -1.59 16 4 C -0.12 -1.51 9.70 -39.59 -0.38 -1.89 16 5 C -0.11 -1.43 9.67 -39.58 -0.38 -1.81 16 6 C -0.07 -0.94 4.39 -104.63 -0.46 -1.40 16 7 C -0.07 -0.93 2.90 -92.93 -0.27 -1.20 16 8 H 0.10 1.15 7.88 -51.93 -0.41 0.74 16 9 C -0.14 -1.31 8.90 37.16 0.33 -0.98 16 10 C 0.51 8.85 6.99 -10.99 -0.08 8.78 16 11 O -0.52 -11.66 14.79 5.56 0.08 -11.57 16 12 N -0.72 -11.51 4.97 -53.91 -0.27 -11.77 16 13 C 0.12 2.41 2.59 -68.04 -0.18 2.24 16 14 H 0.08 1.88 7.58 -51.93 -0.39 1.48 16 15 C -0.12 -1.84 5.36 -26.69 -0.14 -1.98 16 16 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 17 C 0.14 3.06 6.52 -3.71 -0.02 3.03 16 18 N -0.59 -15.37 2.86 -172.59 -0.49 -15.86 16 19 C -0.35 -10.26 9.49 -15.06 -0.14 -10.40 16 20 H 0.06 1.62 7.94 -52.48 -0.42 1.20 16 21 C -0.02 -0.56 4.69 -17.43 -0.08 -0.64 16 22 N -0.91 -28.45 12.41 55.49 0.69 -27.76 16 23 Si 1.06 26.90 29.99 -169.99 -5.10 21.80 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 C 0.15 3.56 4.24 -3.94 -0.02 3.55 16 28 C -0.08 -1.15 7.94 -39.58 -0.31 -1.46 16 29 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.37 7.95 -52.49 -0.42 0.95 16 37 H 0.06 0.50 7.57 -51.93 -0.39 0.11 16 38 H 0.06 0.63 7.37 -51.93 -0.38 0.24 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.39 4.78 8.02 -40.82 -0.33 4.45 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 47 H 0.27 8.35 6.71 -40.82 -0.27 8.08 16 48 H 0.09 2.50 6.30 -51.93 -0.33 2.17 16 49 H 0.01 0.33 7.87 -51.93 -0.41 -0.08 16 50 H 0.12 1.67 7.52 -52.48 -0.39 1.28 16 51 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -35.07 402.79 -10.89 -45.96 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.84 Total: 5.08 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.03 Total: -11.93 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.07 Total: -55.40 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -5.10 Total: 21.80 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.07 -10.89 -45.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.547 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds