Wall clock time and date at job start Tue Mar 31 2020 16:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50699 * 109.46740 * 2 1 4 4 C 1.38233 * 120.00435 * 90.00501 * 3 2 1 5 5 C 1.38229 * 120.00582 * 180.02562 * 4 3 2 6 6 C 1.38239 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00338 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46913 * 359.97438 * 7 6 5 9 9 C 1.53004 * 109.47367 * 240.00394 * 7 6 5 10 10 C 1.50690 * 109.47390 * 119.99971 * 7 6 5 11 11 O 1.21278 * 120.00184 * 0.02562 * 10 7 6 12 12 N 1.34784 * 120.00299 * 180.02562 * 10 7 6 13 13 C 1.46495 * 120.00291 * 180.02562 * 12 10 7 14 14 H 1.09004 * 109.49794 * 34.93561 * 13 12 10 15 15 C 1.53033 * 109.49745 * 154.99925 * 13 12 10 16 16 C 1.53045 * 109.54030 * 181.34799 * 15 13 12 17 17 C 1.53191 * 109.31400 * 298.63884 * 16 15 13 18 18 N 1.46928 * 108.77557 * 54.62787 * 17 16 15 19 19 C 1.36939 * 120.62907 * 126.36988 * 18 17 16 20 20 H 1.08004 * 120.00193 * 332.50885 * 19 18 17 21 21 C 1.38805 * 120.00142 * 152.50281 * 19 18 17 22 22 N 1.31627 * 120.00040 * 335.03066 * 21 19 18 23 23 Si 1.86805 * 120.00321 * 155.03039 * 21 19 18 24 24 H 1.48497 * 109.46928 * 59.99734 * 23 21 19 25 25 H 1.48500 * 109.46770 * 300.00395 * 23 21 19 26 26 H 1.48492 * 109.47261 * 180.02562 * 23 21 19 27 27 C 1.46922 * 118.74004 * 306.64952 * 18 17 16 28 28 C 1.38236 * 119.99599 * 0.25467 * 6 5 4 29 29 C 1.38232 * 120.00141 * 359.49568 * 28 6 5 30 30 H 1.09005 * 109.46503 * 299.99763 * 1 2 3 31 31 H 1.08997 * 109.47364 * 59.99980 * 1 2 3 32 32 H 1.08995 * 109.46782 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46899 * 240.00395 * 2 1 3 34 34 H 1.08997 * 109.47364 * 120.00020 * 2 1 3 35 35 H 1.08005 * 119.99295 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.00177 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47034 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.46500 * 300.00048 * 9 7 6 39 39 H 1.09002 * 109.47058 * 59.99132 * 9 7 6 40 40 H 0.97006 * 119.99419 * 0.02562 * 12 10 7 41 41 H 1.08999 * 109.46474 * 61.32943 * 15 13 12 42 42 H 1.09000 * 109.46479 * 301.36923 * 15 13 12 43 43 H 1.08996 * 109.50007 * 178.68408 * 16 15 13 44 44 H 1.08998 * 109.49409 * 58.58669 * 16 15 13 45 45 H 1.09004 * 109.58295 * 294.84849 * 17 16 15 46 46 H 1.08995 * 109.58536 * 174.41934 * 17 16 15 47 47 H 0.96999 * 119.99790 * 354.25710 * 22 21 19 48 48 H 1.08997 * 109.58703 * 173.14589 * 27 18 17 49 49 H 1.09000 * 109.58443 * 293.56442 * 27 18 17 50 50 H 1.08003 * 119.99452 * 179.72214 * 28 6 5 51 51 H 1.08003 * 119.99851 * 180.22894 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9532 4.0277 -0.0001 7 6 3.4544 5.4489 -0.0001 8 1 3.5744 5.7919 1.0276 9 6 2.4460 6.3453 -0.7218 10 6 4.7820 5.5134 -0.7100 11 8 5.2728 4.5048 -1.1711 12 7 5.4241 6.6921 -0.8327 13 6 6.7145 6.7549 -1.5234 14 1 6.7225 6.0389 -2.3452 15 6 6.9312 8.1664 -2.0736 16 6 8.2636 8.2242 -2.8242 17 6 9.4055 7.9025 -1.8551 18 7 9.1304 6.6102 -1.2124 19 6 10.0600 5.6050 -1.2407 20 1 10.7704 5.5491 -2.0523 21 6 10.0894 4.6581 -0.2263 22 7 9.6118 4.9538 0.9641 23 14 10.8066 2.9639 -0.5504 24 1 12.2284 3.0980 -0.9573 25 1 10.0411 2.3020 -1.6371 26 1 10.7199 2.1450 0.6853 27 6 7.8366 6.4146 -0.5443 28 6 2.7183 3.3776 -1.1972 29 6 2.2630 2.0724 -1.1972 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 2.0825 1.5635 2.1324 36 1 2.9026 3.8852 2.1324 37 1 2.8083 7.3733 -0.7214 38 1 2.3255 6.0024 -1.7494 39 1 1.4857 6.2985 -0.2083 40 1 5.0317 7.4988 -0.4636 41 1 6.9478 8.8791 -1.2490 42 1 6.1191 8.4191 -2.7553 43 1 8.4063 9.2234 -3.2357 44 1 8.2570 7.4944 -3.6338 45 1 9.4706 8.6817 -1.0956 46 1 10.3454 7.8449 -2.4040 47 1 9.3161 5.8572 1.1573 48 1 7.7417 5.3757 -0.2286 49 1 7.7712 7.0700 0.3242 50 1 2.8939 3.8884 -2.1325 51 1 2.0830 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008897399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:50 Heat of formation + Delta-G solvation = -35.196167 kcal Electronic energy + Delta-G solvation = -28838.287652 eV Core-core repulsion = 25122.022754 eV Total energy + Delta-G solvation = -3716.264897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.47039 -40.19823 -39.07615 -36.09936 -35.94209 -34.65597 -33.50335 -31.83092 -31.73904 -30.61281 -29.27009 -27.13060 -25.92244 -24.56010 -23.89316 -23.69225 -23.19372 -21.74798 -21.26357 -20.59604 -19.43002 -18.09145 -17.61950 -16.88631 -16.64470 -16.31319 -16.16377 -15.85329 -15.75942 -15.38788 -15.18903 -14.98478 -14.71933 -14.57313 -14.34169 -14.24231 -14.08286 -13.99742 -13.57054 -13.41185 -13.31989 -13.09643 -12.91459 -12.59999 -12.57786 -12.44340 -12.29824 -12.02328 -12.00074 -11.87316 -11.86125 -11.70627 -11.65383 -11.62567 -11.29780 -10.73869 -10.51214 -10.15467 -9.77798 -9.41609 -8.95783 -8.29378 -5.44685 0.39819 0.53342 1.47781 1.58923 1.67506 1.75194 2.16222 2.59823 2.87771 3.19057 3.52960 3.57999 3.75614 3.82981 3.92062 3.99487 4.02966 4.10273 4.14432 4.20008 4.25434 4.32990 4.39701 4.45132 4.51271 4.56699 4.67801 4.69180 4.72418 4.76282 4.83090 4.90094 4.96974 5.04598 5.07127 5.08121 5.08910 5.11307 5.16188 5.20607 5.21054 5.24635 5.37852 5.41698 5.51899 5.56714 5.69850 5.72752 5.78887 6.13110 6.34609 6.61123 7.01900 7.33888 7.73216 8.16768 8.94938 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003475 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.835166 B = 8056.654370 C = 9759.921920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.086 4.086 7 C -0.063 4.063 8 H 0.121 0.879 9 C -0.131 4.131 10 C 0.507 3.493 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.139 3.861 14 H 0.047 0.953 15 C -0.105 4.105 16 C -0.122 4.122 17 C 0.137 3.863 18 N -0.617 5.617 19 C -0.357 4.357 20 H 0.051 0.949 21 C -0.073 4.073 22 N -0.938 5.938 23 Si 1.105 2.895 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.159 3.841 28 C -0.098 4.098 29 C -0.134 4.134 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.414 0.586 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.253 0.747 48 H 0.029 0.971 49 H 0.007 0.993 50 H 0.108 0.892 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.512 2.598 -2.323 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.147 4.147 5 C -0.139 4.139 6 C -0.086 4.086 7 C -0.085 4.085 8 H 0.139 0.861 9 C -0.188 4.188 10 C 0.294 3.706 11 O -0.458 6.458 12 N -0.361 5.361 13 C 0.032 3.968 14 H 0.065 0.935 15 C -0.143 4.143 16 C -0.161 4.161 17 C 0.012 3.988 18 N -0.343 5.343 19 C -0.487 4.487 20 H 0.069 0.931 21 C -0.270 4.270 22 N -0.580 5.580 23 Si 0.930 3.070 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.216 1.216 27 C 0.032 3.968 28 C -0.116 4.116 29 C -0.152 4.152 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.252 0.748 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.025 0.975 50 H 0.126 0.874 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.861 0.407 -2.009 20.961 hybrid contribution 0.279 1.633 -0.402 1.705 sum -20.581 2.040 -2.411 20.822 Atomic orbital electron populations 1.21703 0.93509 1.02471 1.02034 1.20590 0.97102 0.91234 1.03287 1.20189 0.98681 0.97242 0.92914 1.21235 1.00390 0.94713 0.98384 1.21277 0.99460 0.95521 0.97596 1.19504 0.99942 0.95354 0.93844 1.20347 0.91318 0.94644 1.02151 0.86070 1.21780 0.98295 0.98696 1.00046 1.21256 0.87243 0.82842 0.79242 1.90749 1.69068 1.36068 1.49905 1.45881 1.21035 1.10541 1.58648 1.21216 0.82389 0.98776 0.94429 0.93480 1.21640 0.98445 0.93550 1.00691 1.21901 0.94315 1.02213 0.97717 1.21174 0.97203 0.86102 0.94280 1.44295 1.12575 1.11663 1.65718 1.20180 1.14183 1.08231 1.06127 0.93092 1.27068 1.00776 1.07583 0.91583 1.70892 1.44703 1.22083 1.20335 0.82998 0.76355 0.72472 0.75162 1.18964 1.21872 1.21614 1.20928 0.84962 0.98071 0.92869 1.20938 0.97797 0.95378 0.97482 1.21183 1.00863 0.94699 0.98479 0.92517 0.92896 0.91019 0.90936 0.90396 0.84250 0.84600 0.89591 0.92800 0.89499 0.74825 0.90330 0.89153 0.88172 0.93380 0.95745 0.93092 0.93669 0.95192 0.97514 0.87415 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.90 71.99 0.71 -1.32 16 2 C -0.08 -1.55 6.06 29.85 0.18 -1.37 16 3 C -0.09 -2.20 5.13 -19.87 -0.10 -2.30 16 4 C -0.13 -3.14 9.70 22.27 0.22 -2.92 16 5 C -0.12 -3.14 9.67 22.27 0.22 -2.93 16 6 C -0.09 -2.44 4.39 -19.87 -0.09 -2.53 16 7 C -0.06 -1.57 2.90 -12.29 -0.04 -1.61 16 8 H 0.12 2.52 7.88 -2.38 -0.02 2.50 16 9 C -0.13 -2.20 8.90 71.98 0.64 -1.56 16 10 C 0.51 17.72 6.99 87.65 0.61 18.33 16 11 O -0.58 -27.35 14.79 -3.02 -0.04 -27.39 16 12 N -0.71 -21.94 4.97 -442.87 -2.20 -24.15 16 13 C 0.14 5.37 2.59 44.92 0.12 5.48 16 14 H 0.05 2.19 7.58 -2.38 -0.02 2.17 16 15 C -0.11 -3.02 5.36 30.62 0.16 -2.86 16 16 C -0.12 -3.85 6.08 30.67 0.19 -3.66 16 17 C 0.14 5.68 6.52 86.36 0.56 6.24 16 18 N -0.62 -32.60 2.86 -699.94 -2.00 -34.60 16 19 C -0.36 -21.38 9.49 84.03 0.80 -20.59 16 20 H 0.05 3.03 7.94 -2.91 -0.02 3.00 16 21 C -0.07 -4.50 4.69 84.86 0.40 -4.10 16 22 N -0.94 -60.97 12.41 21.65 0.27 -60.70 16 23 Si 1.11 55.85 29.99 68.60 2.06 57.90 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 27 C 0.16 7.98 4.24 86.22 0.37 8.35 16 28 C -0.10 -2.91 7.94 22.27 0.18 -2.73 16 29 C -0.13 -3.61 9.70 22.27 0.22 -3.39 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.08 1.30 8.09 -2.39 -0.02 1.29 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.14 2.95 7.95 -2.91 -0.02 2.93 16 37 H 0.09 1.05 7.57 -2.39 -0.02 1.03 16 38 H 0.05 1.01 7.37 -2.39 -0.02 0.99 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.41 8.99 8.02 -92.70 -0.74 8.25 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.05 2.12 7.93 -2.39 -0.02 2.11 16 47 H 0.25 16.60 6.71 -92.71 -0.62 15.98 16 48 H 0.03 1.83 6.30 -2.39 -0.02 1.81 16 49 H 0.01 0.35 7.87 -2.39 -0.02 0.33 16 50 H 0.11 3.27 7.52 -2.91 -0.02 3.25 16 51 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -82.41 402.79 3.72 -78.69 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.30 Total: 25.71 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 5.34 Total: -15.46 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.93 Total: -119.45 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.04 Total: -27.39 kcal Atomic # 14 Polarization: 55.85 SS G_CDS: 2.06 Total: 57.90 kcal Total: -82.41 3.72 -78.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008897399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.499 kcal (2) G-P(sol) polarization free energy of solvation -82.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds