Wall clock time and date at job start Tue Mar 31 2020 16:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.38385 * 119.85533 * 265.00294 * 3 2 1 5 5 C 1.37937 * 120.14499 * 179.97438 * 4 3 2 6 6 C 1.39595 * 119.85480 * 0.27530 * 5 4 3 7 7 C 1.47839 * 120.14715 * 179.72207 * 6 5 4 8 8 O 1.21552 * 120.00355 * 179.97438 * 7 6 5 9 9 N 1.34783 * 119.99949 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00001 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.49486 * 34.99556 * 10 9 7 12 12 C 1.53043 * 109.49327 * 155.06257 * 10 9 7 13 13 C 1.53036 * 109.53301 * 181.28360 * 12 10 9 14 14 C 1.53196 * 109.34185 * 298.68272 * 13 12 10 15 15 N 1.46922 * 108.77320 * 54.62066 * 14 13 12 16 16 C 1.36941 * 120.63051 * 126.37179 * 15 14 13 17 17 H 1.07997 * 120.00170 * 207.69617 * 16 15 14 18 18 C 1.38813 * 119.99779 * 27.69543 * 16 15 14 19 19 N 1.31621 * 119.99931 * 17.35417 * 18 16 15 20 20 Si 1.86799 * 119.99965 * 197.34909 * 18 16 15 21 21 H 1.48501 * 109.46965 * 60.00573 * 20 18 16 22 22 H 1.48500 * 109.46976 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47332 * 300.00454 * 20 18 16 24 24 C 1.46926 * 118.74061 * 306.39047 * 15 14 13 25 25 C 1.39561 * 119.70772 * 359.42971 * 6 5 4 26 26 C 1.37983 * 119.85318 * 0.58923 * 25 6 5 27 27 C 1.50698 * 119.92566 * 179.69943 * 26 25 6 28 28 C 1.52999 * 109.47410 * 264.98155 * 27 26 25 29 29 H 1.08999 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46948 * 299.99844 * 1 2 3 31 31 H 1.08999 * 109.47343 * 59.99960 * 1 2 3 32 32 H 1.09002 * 109.46948 * 240.00156 * 2 1 3 33 33 H 1.08999 * 109.47343 * 120.00039 * 2 1 3 34 34 H 1.07999 * 119.92469 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.07159 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99864 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.46084 * 301.33406 * 12 10 9 38 38 H 1.08989 * 109.45984 * 61.29809 * 12 10 9 39 39 H 1.09002 * 109.49608 * 178.71705 * 13 12 10 40 40 H 1.09003 * 109.50421 * 58.64970 * 13 12 10 41 41 H 1.09000 * 109.58654 * 294.83148 * 14 13 12 42 42 H 1.09001 * 109.58645 * 174.41226 * 14 13 12 43 43 H 0.97005 * 119.99792 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.59085 * 293.82272 * 24 15 14 45 45 H 1.09003 * 109.70499 * 173.46286 * 24 15 14 46 46 H 1.08005 * 120.07461 * 180.27944 * 25 6 5 47 47 H 1.09001 * 109.47137 * 24.98692 * 27 26 25 48 48 H 1.09004 * 109.47014 * 144.98188 * 27 26 25 49 49 H 1.09002 * 109.47260 * 180.02562 * 28 27 26 50 50 H 1.08995 * 109.47032 * 300.00148 * 28 27 26 51 51 H 1.08998 * 109.46919 * 60.00725 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8204 3.3359 -1.2026 6 6 2.9599 4.0301 0.0004 7 6 3.4580 5.4221 0.0009 8 8 3.5780 6.0243 1.0500 9 7 3.7781 6.0237 -1.1619 10 6 4.2712 7.4033 -1.1614 11 1 4.8792 7.5719 -0.2727 12 6 5.1183 7.6432 -2.4132 13 6 5.6602 9.0744 -2.3977 14 6 4.4882 10.0609 -2.4097 15 7 3.5913 9.7432 -1.2903 16 6 3.2357 10.7079 -0.3857 17 1 2.9785 10.4310 0.6260 18 6 3.2057 12.0416 -0.7693 19 7 3.1787 12.3587 -2.0464 20 14 3.2038 13.3864 0.5272 21 1 4.4325 13.2785 1.3542 22 1 3.1686 14.7142 -0.1369 23 1 2.0082 13.2357 1.3950 24 6 3.0834 8.3707 -1.1595 25 6 2.6212 3.4065 1.2021 26 6 2.1627 2.1051 1.1952 27 6 1.8030 1.4278 2.4925 28 6 3.0001 0.6176 2.9939 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2563 1.4957 -2.1253 35 1 3.0758 3.8146 -2.1365 36 1 3.6820 5.5433 -1.9991 37 1 5.9505 6.9395 -2.4289 38 1 4.5033 7.4980 -3.3012 39 1 6.2821 9.2375 -3.2779 40 1 6.2559 9.2282 -1.4979 41 1 3.9448 9.9711 -3.3503 42 1 4.8653 11.0776 -2.2988 43 1 3.1574 13.2908 -2.3144 44 1 2.4253 8.1431 -1.9980 45 1 2.5320 8.2704 -0.2246 46 1 2.7226 3.9396 2.1359 47 1 1.5377 2.1811 3.2342 48 1 0.9552 0.7617 2.3317 49 1 2.7398 0.1274 3.9320 50 1 3.2654 -0.1356 2.2522 51 1 3.8478 1.2837 3.1548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009777882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:48 Heat of formation + Delta-G solvation = -14.105715 kcal Electronic energy + Delta-G solvation = -28225.313735 eV Core-core repulsion = 24509.963388 eV Total energy + Delta-G solvation = -3715.350347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.43846 -39.10449 -37.27294 -34.93047 -34.28776 -33.68780 -32.38639 -30.44966 -30.17795 -29.72833 -28.24516 -25.26044 -25.02857 -23.98657 -22.42780 -22.04808 -21.76781 -21.29548 -19.76941 -19.24487 -17.46069 -16.79633 -16.44116 -15.78074 -15.40951 -14.99144 -14.82456 -14.60696 -14.13340 -13.99761 -13.90332 -13.88185 -13.66633 -13.50986 -13.38044 -13.11917 -12.74262 -12.65899 -12.39203 -12.36065 -12.10695 -11.79496 -11.77307 -11.59699 -11.40496 -11.07334 -11.03399 -10.87381 -10.83986 -10.75759 -10.24800 -10.22202 -9.94311 -9.87740 -9.61142 -9.50261 -9.01855 -8.88037 -8.71568 -8.36205 -6.64442 -5.75412 -3.17223 0.75271 1.18985 2.91530 3.36020 3.43695 3.47821 3.51526 3.79928 4.38773 4.45050 4.54536 4.60824 4.69345 4.80100 4.95951 4.99906 5.02520 5.11149 5.18092 5.29966 5.31597 5.34531 5.40496 5.48661 5.53821 5.56175 5.63035 5.64371 5.70066 5.73931 5.76055 5.84376 5.89755 6.01647 6.10385 6.14757 6.18394 6.24084 6.27784 6.40430 6.54845 6.63179 6.69080 6.71530 6.74681 6.86878 7.02964 7.38224 7.66816 7.77184 7.86064 8.44347 8.50933 9.25332 9.87652 10.43351 11.33376 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002423 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.614571 B =11554.828394 C =12177.770168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.128 4.128 7 C 0.552 3.448 8 O -0.533 6.533 9 N -0.717 5.717 10 C 0.126 3.874 11 H 0.087 0.913 12 C -0.115 4.115 13 C -0.140 4.140 14 C 0.167 3.833 15 N -0.587 5.587 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.905 5.905 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.143 3.857 25 C -0.056 4.056 26 C -0.089 4.089 27 C -0.088 4.088 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.393 0.607 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.090 0.910 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -26.807 0.871 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.108 4.108 6 C -0.131 4.131 7 C 0.339 3.661 8 O -0.411 6.411 9 N -0.368 5.368 10 C 0.021 3.979 11 H 0.105 0.895 12 C -0.153 4.153 13 C -0.179 4.179 14 C 0.041 3.959 15 N -0.310 5.310 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.015 3.985 25 C -0.075 4.075 26 C -0.089 4.089 27 C -0.125 4.125 28 C -0.205 4.205 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.153 0.847 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.805 -26.149 1.555 26.208 hybrid contribution -0.047 0.578 -0.010 0.580 sum -0.852 -25.572 1.544 25.633 Atomic orbital electron populations 1.21767 0.94523 1.01774 1.02511 1.20648 0.96379 0.92618 1.03109 1.19913 0.97483 0.96080 0.92612 1.20932 1.00719 0.94914 0.97625 1.21286 0.97812 0.94578 0.97076 1.20043 1.04101 0.94590 0.94374 1.18256 0.77879 0.85776 0.84185 1.90796 1.53170 1.65821 1.31266 1.46074 1.66782 1.15634 1.08300 1.21771 0.97560 0.79276 0.99337 0.89514 1.21677 0.98388 0.98326 0.96896 1.22182 1.00291 0.94780 1.00681 1.20848 0.87915 0.97726 0.89374 1.43992 1.52262 1.04348 1.30417 1.19191 1.41424 0.86443 0.90919 0.91597 1.25019 1.00826 0.97948 0.95859 1.70034 1.53973 1.17020 1.13901 0.86344 0.78244 0.81044 0.81035 1.20970 1.21650 1.20856 1.21173 0.92565 0.85541 0.99207 1.21173 0.94860 0.93549 0.97945 1.19691 1.00435 0.93910 0.94902 1.20606 0.98741 0.99416 0.93770 1.21772 0.98030 0.99981 1.00759 0.92321 0.92294 0.92389 0.90988 0.90461 0.85614 0.85645 0.77240 0.93081 0.92262 0.92704 0.92403 0.96311 0.89222 0.93630 0.96527 0.92390 0.84695 0.90777 0.90566 0.92322 0.92532 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.72 37.15 0.36 -0.53 16 2 C -0.09 -0.58 5.37 -27.89 -0.15 -0.73 16 3 C -0.06 -0.54 5.14 -104.53 -0.54 -1.08 16 4 C -0.12 -1.11 9.66 -39.64 -0.38 -1.50 16 5 C -0.09 -0.93 9.54 -39.19 -0.37 -1.30 16 6 C -0.13 -1.70 5.87 -104.97 -0.62 -2.32 16 7 C 0.55 9.17 7.74 -12.33 -0.10 9.07 16 8 O -0.53 -11.07 16.01 5.32 0.09 -10.99 16 9 N -0.72 -10.91 5.03 -54.63 -0.27 -11.19 16 10 C 0.13 2.33 2.60 -67.81 -0.18 2.16 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.11 -1.88 5.36 -26.69 -0.14 -2.03 16 13 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 14 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 15 N -0.59 -15.24 2.99 -172.32 -0.52 -15.76 16 16 C -0.25 -7.17 9.59 -15.06 -0.14 -7.31 16 17 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 18 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 19 N -0.90 -26.61 11.19 55.49 0.62 -25.99 16 20 Si 0.90 22.38 29.59 -169.99 -5.03 17.35 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.14 3.21 6.09 -3.71 -0.02 3.19 16 25 C -0.06 -0.71 9.22 -39.18 -0.36 -1.07 16 26 C -0.09 -0.90 5.13 -104.68 -0.54 -1.43 16 27 C -0.09 -0.69 5.38 -27.88 -0.15 -0.84 16 28 C -0.15 -1.04 9.72 37.16 0.36 -0.68 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.38 6.79 -51.93 -0.35 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 33 H 0.08 0.45 5.60 -51.93 -0.29 0.16 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.05 6.41 -52.49 -0.34 0.71 16 36 H 0.39 4.65 6.64 -40.82 -0.27 4.38 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.92 8.14 -51.94 -0.42 0.50 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.40 7.94 -51.93 -0.41 0.99 16 46 H 0.14 1.79 7.65 -52.48 -0.40 1.39 16 47 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 48 H 0.08 0.51 5.59 -51.93 -0.29 0.22 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 0.37 6.79 -51.93 -0.35 0.02 16 51 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -32.79 397.35 -10.81 -43.60 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.45 Total: 2.24 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.24 Total: -5.26 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.17 Total: -52.93 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.79 -10.81 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009777882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds