Wall clock time and date at job start Tue Mar 31 2020 16:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.38385 * 119.85533 * 265.00294 * 3 2 1 5 5 C 1.37937 * 120.14499 * 179.97438 * 4 3 2 6 6 C 1.39595 * 119.85480 * 0.27530 * 5 4 3 7 7 C 1.47839 * 120.14715 * 179.72207 * 6 5 4 8 8 O 1.21552 * 120.00355 * 179.97438 * 7 6 5 9 9 N 1.34783 * 119.99949 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00001 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.49486 * 34.99556 * 10 9 7 12 12 C 1.53043 * 109.49327 * 155.06257 * 10 9 7 13 13 C 1.53036 * 109.53301 * 181.28360 * 12 10 9 14 14 C 1.53196 * 109.34185 * 298.68272 * 13 12 10 15 15 N 1.46922 * 108.77320 * 54.62066 * 14 13 12 16 16 C 1.36941 * 120.63051 * 126.37179 * 15 14 13 17 17 H 1.07997 * 120.00170 * 207.69617 * 16 15 14 18 18 C 1.38813 * 119.99779 * 27.69543 * 16 15 14 19 19 N 1.31621 * 119.99931 * 17.35417 * 18 16 15 20 20 Si 1.86799 * 119.99965 * 197.34909 * 18 16 15 21 21 H 1.48501 * 109.46965 * 60.00573 * 20 18 16 22 22 H 1.48500 * 109.46976 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47332 * 300.00454 * 20 18 16 24 24 C 1.46926 * 118.74061 * 306.39047 * 15 14 13 25 25 C 1.39561 * 119.70772 * 359.42971 * 6 5 4 26 26 C 1.37983 * 119.85318 * 0.58923 * 25 6 5 27 27 C 1.50698 * 119.92566 * 179.69943 * 26 25 6 28 28 C 1.52999 * 109.47410 * 264.98155 * 27 26 25 29 29 H 1.08999 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46948 * 299.99844 * 1 2 3 31 31 H 1.08999 * 109.47343 * 59.99960 * 1 2 3 32 32 H 1.09002 * 109.46948 * 240.00156 * 2 1 3 33 33 H 1.08999 * 109.47343 * 120.00039 * 2 1 3 34 34 H 1.07999 * 119.92469 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.07159 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99864 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.46084 * 301.33406 * 12 10 9 38 38 H 1.08989 * 109.45984 * 61.29809 * 12 10 9 39 39 H 1.09002 * 109.49608 * 178.71705 * 13 12 10 40 40 H 1.09003 * 109.50421 * 58.64970 * 13 12 10 41 41 H 1.09000 * 109.58654 * 294.83148 * 14 13 12 42 42 H 1.09001 * 109.58645 * 174.41226 * 14 13 12 43 43 H 0.97005 * 119.99792 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.59085 * 293.82272 * 24 15 14 45 45 H 1.09003 * 109.70499 * 173.46286 * 24 15 14 46 46 H 1.08005 * 120.07461 * 180.27944 * 25 6 5 47 47 H 1.09001 * 109.47137 * 24.98692 * 27 26 25 48 48 H 1.09004 * 109.47014 * 144.98188 * 27 26 25 49 49 H 1.09002 * 109.47260 * 180.02562 * 28 27 26 50 50 H 1.08995 * 109.47032 * 300.00148 * 28 27 26 51 51 H 1.08998 * 109.46919 * 60.00725 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8204 3.3359 -1.2026 6 6 2.9599 4.0301 0.0004 7 6 3.4580 5.4221 0.0009 8 8 3.5780 6.0243 1.0500 9 7 3.7781 6.0237 -1.1619 10 6 4.2712 7.4033 -1.1614 11 1 4.8792 7.5719 -0.2727 12 6 5.1183 7.6432 -2.4132 13 6 5.6602 9.0744 -2.3977 14 6 4.4882 10.0609 -2.4097 15 7 3.5913 9.7432 -1.2903 16 6 3.2357 10.7079 -0.3857 17 1 2.9785 10.4310 0.6260 18 6 3.2057 12.0416 -0.7693 19 7 3.1787 12.3587 -2.0464 20 14 3.2038 13.3864 0.5272 21 1 4.4325 13.2785 1.3542 22 1 3.1686 14.7142 -0.1369 23 1 2.0082 13.2357 1.3950 24 6 3.0834 8.3707 -1.1595 25 6 2.6212 3.4065 1.2021 26 6 2.1627 2.1051 1.1952 27 6 1.8030 1.4278 2.4925 28 6 3.0001 0.6176 2.9939 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2563 1.4957 -2.1253 35 1 3.0758 3.8146 -2.1365 36 1 3.6820 5.5433 -1.9991 37 1 5.9505 6.9395 -2.4289 38 1 4.5033 7.4980 -3.3012 39 1 6.2821 9.2375 -3.2779 40 1 6.2559 9.2282 -1.4979 41 1 3.9448 9.9711 -3.3503 42 1 4.8653 11.0776 -2.2988 43 1 3.1574 13.2908 -2.3144 44 1 2.4253 8.1431 -1.9980 45 1 2.5320 8.2704 -0.2246 46 1 2.7226 3.9396 2.1359 47 1 1.5377 2.1811 3.2342 48 1 0.9552 0.7617 2.3317 49 1 2.7398 0.1274 3.9320 50 1 3.2654 -0.1356 2.2522 51 1 3.8478 1.2837 3.1548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009777882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:47 Heat of formation + Delta-G solvation = -32.635624 kcal Electronic energy + Delta-G solvation = -28226.117252 eV Core-core repulsion = 24509.963388 eV Total energy + Delta-G solvation = -3716.153864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.49500 -40.24915 -38.90416 -36.05951 -35.63832 -34.33792 -34.12136 -32.37039 -31.11165 -30.71631 -29.49033 -27.28893 -25.80905 -24.85340 -23.92808 -23.55102 -22.52008 -22.45283 -21.22888 -20.57670 -18.74868 -18.56300 -17.53234 -16.92432 -16.54924 -16.41990 -16.24248 -15.90664 -15.63445 -15.27058 -14.93339 -14.80575 -14.73936 -14.59746 -14.46616 -14.22521 -14.14725 -14.01953 -13.49986 -13.40832 -13.21727 -13.05520 -12.78631 -12.75312 -12.62476 -12.48666 -12.17495 -12.12179 -12.04143 -11.99587 -11.80447 -11.67001 -11.60817 -11.45699 -11.34544 -10.94915 -10.64089 -10.21457 -9.82498 -9.57712 -8.72383 -7.93216 -5.38662 -0.15699 0.38926 1.42336 1.44633 1.52336 1.81585 2.07984 2.48607 2.83391 3.20569 3.57766 3.71526 3.73008 3.85199 3.88914 3.96195 4.08088 4.12935 4.20742 4.23002 4.41463 4.44960 4.47301 4.52515 4.54274 4.55212 4.60853 4.77313 4.77814 4.86317 4.90211 4.98485 5.01392 5.06143 5.09104 5.10341 5.11371 5.12583 5.23512 5.24329 5.33374 5.34667 5.43108 5.47161 5.50405 5.53237 5.60295 5.66935 5.74097 5.96459 6.34003 6.54280 7.09988 7.21218 7.79332 8.29365 9.12376 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002423 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.614571 B =11554.828394 C =12177.770168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.054 4.054 4 C -0.121 4.121 5 C -0.084 4.084 6 C -0.152 4.152 7 C 0.549 3.451 8 O -0.588 6.588 9 N -0.702 5.702 10 C 0.141 3.859 11 H 0.056 0.944 12 C -0.104 4.104 13 C -0.130 4.130 14 C 0.171 3.829 15 N -0.607 5.607 16 C -0.271 4.271 17 H 0.051 0.949 18 C -0.043 4.043 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.279 1.279 24 C 0.146 3.854 25 C -0.077 4.077 26 C -0.093 4.093 27 C -0.088 4.088 28 C -0.145 4.145 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.414 0.586 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.007 0.993 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.022 0.978 45 H 0.025 0.975 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -30.074 -0.762 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.054 4.054 4 C -0.139 4.139 5 C -0.103 4.103 6 C -0.155 4.155 7 C 0.338 3.662 8 O -0.469 6.469 9 N -0.354 5.354 10 C 0.035 3.965 11 H 0.074 0.926 12 C -0.142 4.142 13 C -0.169 4.169 14 C 0.046 3.954 15 N -0.331 5.331 16 C -0.401 4.401 17 H 0.069 0.931 18 C -0.239 4.239 19 N -0.573 5.573 20 Si 0.794 3.206 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.205 1.205 24 C 0.019 3.981 25 C -0.096 4.096 26 C -0.093 4.093 27 C -0.125 4.125 28 C -0.202 4.202 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.177 0.823 35 H 0.166 0.834 36 H 0.252 0.748 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.130 0.870 47 H 0.084 0.916 48 H 0.112 0.888 49 H 0.091 0.909 50 H 0.084 0.916 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.596 -29.467 -0.118 29.473 hybrid contribution -0.198 1.497 0.508 1.593 sum -0.794 -27.970 0.390 27.984 Atomic orbital electron populations 1.21769 0.94103 1.02702 1.01986 1.20732 0.96563 0.90789 1.04500 1.20322 0.95751 0.97303 0.92040 1.21335 0.99270 0.94293 0.98966 1.21525 0.97064 0.95151 0.96559 1.19835 1.06701 0.92975 0.96034 1.18878 0.76750 0.87003 0.83524 1.90764 1.55514 1.67415 1.33205 1.45806 1.66175 1.14250 1.09124 1.21292 0.95589 0.80037 0.99597 0.92598 1.21615 0.99324 0.97306 0.95920 1.22022 0.98273 0.94946 1.01680 1.20747 0.89095 0.97605 0.88001 1.44220 1.53221 1.05106 1.30544 1.19350 1.41942 0.87789 0.91054 0.93150 1.25724 1.00683 0.99659 0.97827 1.70159 1.54563 1.17250 1.15345 0.85372 0.78224 0.78367 0.78677 1.20549 1.20980 1.20517 1.21186 0.94117 0.85219 0.97574 1.21161 0.96486 0.94890 0.97099 1.19902 0.99859 0.92917 0.96581 1.20660 0.99735 0.99488 0.92651 1.21754 0.96981 0.99731 1.01778 0.90702 0.93036 0.92766 0.89168 0.89591 0.82320 0.83372 0.74779 0.89380 0.90317 0.89431 0.93520 0.97489 0.92576 0.93746 0.96046 0.95584 0.87000 0.91635 0.88816 0.90874 0.91559 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.72 71.98 0.70 -0.61 16 2 C -0.09 -0.81 5.37 29.85 0.16 -0.65 16 3 C -0.05 -0.82 5.14 -19.81 -0.10 -0.92 16 4 C -0.12 -1.76 9.66 22.23 0.21 -1.54 16 5 C -0.08 -1.57 9.54 22.53 0.21 -1.35 16 6 C -0.15 -4.07 5.87 -20.09 -0.12 -4.19 16 7 C 0.55 18.89 7.74 86.78 0.67 19.56 16 8 O -0.59 -26.26 16.01 -3.88 -0.06 -26.32 16 9 N -0.70 -21.00 5.03 -445.03 -2.24 -23.24 16 10 C 0.14 5.27 2.60 45.07 0.12 5.38 16 11 H 0.06 2.46 7.58 -2.39 -0.02 2.45 16 12 C -0.10 -3.16 5.36 30.62 0.16 -2.99 16 13 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 14 C 0.17 8.32 5.31 86.36 0.46 8.78 16 15 N -0.61 -32.71 2.99 -699.10 -2.09 -34.80 16 16 C -0.27 -16.23 9.59 84.03 0.81 -15.43 16 17 H 0.05 3.09 7.89 -2.91 -0.02 3.07 16 18 C -0.04 -2.51 4.91 84.86 0.42 -2.10 16 19 N -0.93 -55.95 11.19 21.65 0.24 -55.71 16 20 Si 0.97 47.19 29.59 68.60 2.03 49.22 16 21 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.15 6.81 6.09 86.36 0.53 7.34 16 25 C -0.08 -2.03 9.22 22.53 0.21 -1.82 16 26 C -0.09 -1.79 5.13 -19.90 -0.10 -1.89 16 27 C -0.09 -1.31 5.38 29.85 0.16 -1.15 16 28 C -0.15 -1.85 9.72 71.98 0.70 -1.15 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.53 6.79 -2.39 -0.02 0.52 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.56 8.05 -2.39 -0.02 0.54 16 33 H 0.09 0.68 5.60 -2.39 -0.01 0.66 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.15 1.95 6.41 -2.91 -0.02 1.94 16 36 H 0.41 8.82 6.64 -92.71 -0.62 8.20 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 3.10 6.04 -2.39 -0.01 3.08 16 43 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 44 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.03 1.34 7.94 -2.39 -0.02 1.32 16 46 H 0.11 3.34 7.65 -2.91 -0.02 3.32 16 47 H 0.06 1.07 8.05 -2.39 -0.02 1.05 16 48 H 0.09 1.06 5.59 -2.38 -0.01 1.04 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.71 6.79 -2.39 -0.02 0.69 16 51 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -76.57 397.35 3.56 -73.00 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.30 Total: 17.14 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.38 Total: 0.71 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -4.09 Total: -113.75 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -76.57 3.56 -73.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009777882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.369 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds