Wall clock time and date at job start Tue Mar 31 2020 16:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47012 * 2 1 4 4 C 1.38386 * 119.85003 * 264.72533 * 3 2 1 5 5 C 1.37935 * 120.13764 * 179.72110 * 4 3 2 6 6 C 1.39591 * 119.85945 * 0.57526 * 5 4 3 7 7 C 1.47841 * 120.15021 * 179.67915 * 6 5 4 8 8 O 1.21553 * 120.00277 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00036 * 0.02562 * 7 6 5 10 10 C 1.46494 * 120.00292 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49988 * 324.94290 * 10 9 7 12 12 C 1.53039 * 109.50202 * 204.83843 * 10 9 7 13 13 C 1.53039 * 109.53922 * 178.68915 * 12 10 9 14 14 C 1.53187 * 109.31672 * 61.36454 * 13 12 10 15 15 N 1.46933 * 108.77423 * 305.36819 * 14 13 12 16 16 C 1.36941 * 120.62411 * 233.63072 * 15 14 13 17 17 H 1.07998 * 119.99289 * 152.60999 * 16 15 14 18 18 C 1.38805 * 120.00016 * 332.60505 * 16 15 14 19 19 N 1.31623 * 119.99688 * 159.38079 * 18 16 15 20 20 Si 1.86802 * 120.00409 * 339.36920 * 18 16 15 21 21 H 1.48507 * 109.46574 * 92.93362 * 20 18 16 22 22 H 1.48495 * 109.47405 * 212.93209 * 20 18 16 23 23 H 1.48500 * 109.46725 * 332.93609 * 20 18 16 24 24 C 1.46922 * 118.74204 * 53.60677 * 15 14 13 25 25 C 1.39562 * 119.70946 * 359.70046 * 6 5 4 26 26 C 1.37979 * 119.85016 * 359.97438 * 25 6 5 27 27 C 1.50697 * 119.92814 * 180.02562 * 26 25 6 28 28 C 1.53004 * 109.47241 * 265.02611 * 27 26 25 29 29 H 1.09006 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08987 * 109.47575 * 299.99866 * 1 2 3 31 31 H 1.09003 * 109.47079 * 60.00405 * 1 2 3 32 32 H 1.08997 * 109.47504 * 120.00154 * 2 1 3 33 33 H 1.09002 * 109.47239 * 239.99890 * 2 1 3 34 34 H 1.07991 * 119.93098 * 359.97438 * 4 3 2 35 35 H 1.08009 * 120.07247 * 180.27479 * 5 4 3 36 36 H 0.97003 * 119.99332 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.45618 * 298.70817 * 12 10 9 38 38 H 1.08998 * 109.45835 * 58.66011 * 12 10 9 39 39 H 1.08998 * 109.49462 * 301.41041 * 13 12 10 40 40 H 1.09002 * 109.49335 * 181.32178 * 13 12 10 41 41 H 1.08998 * 109.58710 * 185.57951 * 14 13 12 42 42 H 1.09003 * 109.58772 * 65.14991 * 14 13 12 43 43 H 0.97004 * 119.99926 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58578 * 186.60952 * 24 15 14 45 45 H 1.08994 * 109.58679 * 66.17726 * 24 15 14 46 46 H 1.07995 * 120.07436 * 179.97438 * 25 6 5 47 47 H 1.09004 * 109.47064 * 25.02502 * 27 26 25 48 48 H 1.08993 * 109.47517 * 145.02751 * 27 26 25 49 49 H 1.08997 * 109.47456 * 59.99838 * 28 27 26 50 50 H 1.09000 * 109.47418 * 179.97438 * 28 27 26 51 51 H 1.09004 * 109.47002 * 299.99928 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3659 2.0335 -1.1952 5 6 2.8208 3.3356 -1.2026 6 6 2.9558 4.0315 -0.0001 7 6 3.4495 5.4251 0.0000 8 8 3.5664 6.0284 1.0488 9 7 3.7699 6.0266 -1.1627 10 6 4.2586 7.4076 -1.1627 11 1 3.7568 7.9711 -0.3762 12 6 3.9672 8.0527 -2.5196 13 6 4.4480 9.5056 -2.5095 14 6 5.9614 9.5369 -2.2743 15 7 6.2644 8.7923 -1.0444 16 6 6.9933 9.3714 -0.0401 17 1 6.8551 9.0499 0.9817 18 6 7.9096 10.3713 -0.3353 19 7 8.3066 11.1994 0.6076 20 14 8.5797 10.5415 -2.0707 21 1 7.7478 11.5095 -2.8298 22 1 9.9808 11.0303 -2.0146 23 1 8.5431 9.2200 -2.7472 24 6 5.7700 7.4151 -0.9123 25 6 2.6230 3.4059 1.2022 26 6 2.1627 2.1051 1.1951 27 6 1.8023 1.4281 2.4923 28 6 2.9988 0.6170 2.9939 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 2.2660 1.4923 -2.1244 35 1 3.0767 3.8142 -2.1365 36 1 3.6770 5.5450 -1.9996 37 1 4.4894 7.5028 -3.3027 38 1 2.8945 8.0263 -2.7113 39 1 3.9443 10.0498 -1.7106 40 1 4.2189 9.9712 -3.4680 41 1 6.2933 10.5696 -2.1675 42 1 6.4719 9.0721 -3.1178 43 1 8.9467 11.8985 0.4012 44 1 5.9756 7.0480 0.0932 45 1 6.2649 6.7774 -1.6447 46 1 2.7255 3.9386 2.1360 47 1 1.5375 2.1815 3.2341 48 1 0.9542 0.7626 2.3315 49 1 3.8471 1.2823 3.1548 50 1 2.7384 0.1276 3.9324 51 1 3.2637 -0.1365 2.2521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009777886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:51 Heat of formation + Delta-G solvation = -7.803677 kcal Electronic energy + Delta-G solvation = -28299.202100 eV Core-core repulsion = 24584.125030 eV Total energy + Delta-G solvation = -3715.077070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48845 -39.20124 -37.55634 -34.96465 -34.43262 -33.70981 -32.48412 -30.82189 -30.27665 -29.90243 -28.61120 -25.30849 -25.08729 -24.08048 -22.70678 -21.97174 -21.79820 -21.54430 -19.87975 -19.50692 -17.55679 -16.83922 -16.49210 -15.82762 -15.54699 -15.30354 -14.97945 -14.79586 -14.19573 -14.01536 -13.93227 -13.91551 -13.76243 -13.72567 -13.47535 -13.21394 -12.87304 -12.81222 -12.66317 -12.34449 -12.14352 -12.05710 -11.80616 -11.61620 -11.51834 -11.42905 -11.13961 -11.04500 -10.90457 -10.87442 -10.74646 -10.15043 -9.99058 -9.76669 -9.67060 -9.43730 -9.06000 -8.99898 -8.81204 -8.48957 -6.94618 -5.90108 -3.26664 0.71575 1.15834 2.87053 3.27211 3.33329 3.49914 3.52949 3.75622 4.36080 4.42104 4.55874 4.57446 4.66965 4.74277 4.91981 4.97250 4.98735 5.04593 5.10665 5.14920 5.19176 5.28139 5.28944 5.32909 5.44228 5.46795 5.51442 5.53342 5.62426 5.67238 5.73620 5.82532 5.83273 5.87119 5.95405 6.01086 6.04379 6.12352 6.20636 6.21791 6.31598 6.37446 6.44027 6.54957 6.63714 6.66207 6.70596 6.79967 6.95727 7.68261 8.00230 8.37008 8.41605 8.98499 9.75888 10.11602 11.25854 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002469 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.441654 B =11337.141614 C =12011.062287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.128 4.128 7 C 0.553 3.447 8 O -0.529 6.529 9 N -0.719 5.719 10 C 0.125 3.875 11 H 0.091 0.909 12 C -0.116 4.116 13 C -0.132 4.132 14 C 0.122 3.878 15 N -0.602 5.602 16 C -0.258 4.258 17 H 0.087 0.913 18 C 0.022 3.978 19 N -0.908 5.908 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.145 3.855 25 C -0.056 4.056 26 C -0.089 4.089 27 C -0.088 4.088 28 C -0.149 4.149 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.136 0.864 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 -23.458 -5.100 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.142 4.142 5 C -0.108 4.108 6 C -0.132 4.132 7 C 0.339 3.661 8 O -0.406 6.406 9 N -0.370 5.370 10 C 0.020 3.980 11 H 0.110 0.890 12 C -0.154 4.154 13 C -0.171 4.171 14 C -0.004 4.004 15 N -0.325 5.325 16 C -0.386 4.386 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.018 3.982 25 C -0.075 4.075 26 C -0.089 4.089 27 C -0.125 4.125 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.154 0.846 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.508 -22.857 -4.266 28.516 hybrid contribution 0.493 0.063 -1.544 1.623 sum -16.015 -22.794 -5.810 28.457 Atomic orbital electron populations 1.21763 0.94555 1.01785 1.02418 1.20655 0.96340 0.92625 1.03199 1.19917 0.97424 0.96069 0.92613 1.20929 1.00749 0.94888 0.97647 1.21271 0.97861 0.94607 0.97043 1.20020 1.04190 0.94554 0.94388 1.18268 0.77709 0.85946 0.84139 1.90819 1.53172 1.65509 1.31097 1.46023 1.66858 1.15642 1.08462 1.21722 0.97598 0.80171 0.98532 0.89047 1.21681 1.00187 0.97347 0.96199 1.21997 0.99047 0.94961 1.01145 1.21405 0.92676 0.97304 0.89000 1.44300 1.61450 1.09360 1.17423 1.18957 1.14683 1.16887 0.88058 0.89564 1.25270 0.97831 0.97571 0.96944 1.69848 1.34691 1.17488 1.33038 0.86942 0.77627 0.77864 0.86171 1.21621 1.23178 1.19661 1.21215 0.90126 0.86670 1.00238 1.21183 0.94753 0.93582 0.97946 1.19701 1.00349 0.93916 0.94919 1.20607 0.98773 0.99404 0.93726 1.21779 0.98052 1.00026 1.00769 0.92309 0.92304 0.92467 0.90394 0.90961 0.85623 0.85698 0.77188 0.92120 0.92410 0.91351 0.92213 0.90728 0.95655 0.92799 0.91408 0.96011 0.84629 0.90781 0.90595 0.92222 0.92289 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.72 37.16 0.36 -0.46 16 2 C -0.09 -0.56 5.38 -27.88 -0.15 -0.71 16 3 C -0.06 -0.52 5.14 -104.53 -0.54 -1.05 16 4 C -0.12 -1.06 9.66 -39.64 -0.38 -1.45 16 5 C -0.09 -0.88 9.54 -39.19 -0.37 -1.25 16 6 C -0.13 -1.64 5.87 -104.97 -0.62 -2.26 16 7 C 0.55 8.82 7.74 -12.33 -0.10 8.73 16 8 O -0.53 -10.77 16.01 5.32 0.09 -10.68 16 9 N -0.72 -10.24 5.03 -54.63 -0.27 -10.51 16 10 C 0.12 2.18 2.60 -67.81 -0.18 2.00 16 11 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 12 C -0.12 -1.73 5.35 -26.69 -0.14 -1.87 16 13 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 14 C 0.12 2.66 4.20 -3.71 -0.02 2.64 16 15 N -0.60 -14.80 2.77 -172.32 -0.48 -15.28 16 16 C -0.26 -7.50 10.03 -15.06 -0.15 -7.65 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 19 N -0.91 -28.51 13.97 55.49 0.78 -27.74 16 20 Si 0.88 22.70 24.35 -169.99 -4.14 18.56 16 21 H -0.29 -7.08 6.62 56.52 0.37 -6.71 16 22 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 23 H -0.27 -6.83 6.64 56.52 0.38 -6.46 16 24 C 0.14 3.05 6.09 -3.71 -0.02 3.03 16 25 C -0.06 -0.68 9.22 -39.18 -0.36 -1.04 16 26 C -0.09 -0.87 5.13 -104.68 -0.54 -1.40 16 27 C -0.09 -0.67 5.38 -27.88 -0.15 -0.82 16 28 C -0.15 -1.07 9.72 37.16 0.36 -0.71 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.34 6.79 -51.94 -0.35 -0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.45 5.59 -51.93 -0.29 0.16 16 33 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.96 6.41 -52.48 -0.34 0.62 16 36 H 0.39 4.23 6.64 -40.82 -0.27 3.96 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.79 4.49 -51.93 -0.23 1.56 16 42 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 44 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.14 1.76 7.65 -52.49 -0.40 1.36 16 47 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 48 H 0.08 0.48 5.59 -51.93 -0.29 0.19 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.38 6.79 -51.93 -0.35 0.03 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -34.17 390.91 -9.76 -43.93 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.38 Total: 1.98 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.24 Total: -6.15 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.02 Total: -53.52 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.17 -9.76 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009777886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.128 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds