Wall clock time and date at job start Tue Mar 31 2020 16:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47012 * 2 1 4 4 C 1.38386 * 119.85003 * 264.72533 * 3 2 1 5 5 C 1.37935 * 120.13764 * 179.72110 * 4 3 2 6 6 C 1.39591 * 119.85945 * 0.57526 * 5 4 3 7 7 C 1.47841 * 120.15021 * 179.67915 * 6 5 4 8 8 O 1.21553 * 120.00277 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00036 * 0.02562 * 7 6 5 10 10 C 1.46494 * 120.00292 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49988 * 324.94290 * 10 9 7 12 12 C 1.53039 * 109.50202 * 204.83843 * 10 9 7 13 13 C 1.53039 * 109.53922 * 178.68915 * 12 10 9 14 14 C 1.53187 * 109.31672 * 61.36454 * 13 12 10 15 15 N 1.46933 * 108.77423 * 305.36819 * 14 13 12 16 16 C 1.36941 * 120.62411 * 233.63072 * 15 14 13 17 17 H 1.07998 * 119.99289 * 152.60999 * 16 15 14 18 18 C 1.38805 * 120.00016 * 332.60505 * 16 15 14 19 19 N 1.31623 * 119.99688 * 159.38079 * 18 16 15 20 20 Si 1.86802 * 120.00409 * 339.36920 * 18 16 15 21 21 H 1.48507 * 109.46574 * 92.93362 * 20 18 16 22 22 H 1.48495 * 109.47405 * 212.93209 * 20 18 16 23 23 H 1.48500 * 109.46725 * 332.93609 * 20 18 16 24 24 C 1.46922 * 118.74204 * 53.60677 * 15 14 13 25 25 C 1.39562 * 119.70946 * 359.70046 * 6 5 4 26 26 C 1.37979 * 119.85016 * 359.97438 * 25 6 5 27 27 C 1.50697 * 119.92814 * 180.02562 * 26 25 6 28 28 C 1.53004 * 109.47241 * 265.02611 * 27 26 25 29 29 H 1.09006 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08987 * 109.47575 * 299.99866 * 1 2 3 31 31 H 1.09003 * 109.47079 * 60.00405 * 1 2 3 32 32 H 1.08997 * 109.47504 * 120.00154 * 2 1 3 33 33 H 1.09002 * 109.47239 * 239.99890 * 2 1 3 34 34 H 1.07991 * 119.93098 * 359.97438 * 4 3 2 35 35 H 1.08009 * 120.07247 * 180.27479 * 5 4 3 36 36 H 0.97003 * 119.99332 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.45618 * 298.70817 * 12 10 9 38 38 H 1.08998 * 109.45835 * 58.66011 * 12 10 9 39 39 H 1.08998 * 109.49462 * 301.41041 * 13 12 10 40 40 H 1.09002 * 109.49335 * 181.32178 * 13 12 10 41 41 H 1.08998 * 109.58710 * 185.57951 * 14 13 12 42 42 H 1.09003 * 109.58772 * 65.14991 * 14 13 12 43 43 H 0.97004 * 119.99926 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58578 * 186.60952 * 24 15 14 45 45 H 1.08994 * 109.58679 * 66.17726 * 24 15 14 46 46 H 1.07995 * 120.07436 * 179.97438 * 25 6 5 47 47 H 1.09004 * 109.47064 * 25.02502 * 27 26 25 48 48 H 1.08993 * 109.47517 * 145.02751 * 27 26 25 49 49 H 1.08997 * 109.47456 * 59.99838 * 28 27 26 50 50 H 1.09000 * 109.47418 * 179.97438 * 28 27 26 51 51 H 1.09004 * 109.47002 * 299.99928 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3659 2.0335 -1.1952 5 6 2.8208 3.3356 -1.2026 6 6 2.9558 4.0315 -0.0001 7 6 3.4495 5.4251 0.0000 8 8 3.5664 6.0284 1.0488 9 7 3.7699 6.0266 -1.1627 10 6 4.2586 7.4076 -1.1627 11 1 3.7568 7.9711 -0.3762 12 6 3.9672 8.0527 -2.5196 13 6 4.4480 9.5056 -2.5095 14 6 5.9614 9.5369 -2.2743 15 7 6.2644 8.7923 -1.0444 16 6 6.9933 9.3714 -0.0401 17 1 6.8551 9.0499 0.9817 18 6 7.9096 10.3713 -0.3353 19 7 8.3066 11.1994 0.6076 20 14 8.5797 10.5415 -2.0707 21 1 7.7478 11.5095 -2.8298 22 1 9.9808 11.0303 -2.0146 23 1 8.5431 9.2200 -2.7472 24 6 5.7700 7.4151 -0.9123 25 6 2.6230 3.4059 1.2022 26 6 2.1627 2.1051 1.1951 27 6 1.8023 1.4281 2.4923 28 6 2.9988 0.6170 2.9939 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 2.2660 1.4923 -2.1244 35 1 3.0767 3.8142 -2.1365 36 1 3.6770 5.5450 -1.9996 37 1 4.4894 7.5028 -3.3027 38 1 2.8945 8.0263 -2.7113 39 1 3.9443 10.0498 -1.7106 40 1 4.2189 9.9712 -3.4680 41 1 6.2933 10.5696 -2.1675 42 1 6.4719 9.0721 -3.1178 43 1 8.9467 11.8985 0.4012 44 1 5.9756 7.0480 0.0932 45 1 6.2649 6.7774 -1.6447 46 1 2.7255 3.9386 2.1360 47 1 1.5375 2.1815 3.2341 48 1 0.9542 0.7626 2.3315 49 1 3.8471 1.2823 3.1548 50 1 2.7384 0.1276 3.9324 51 1 3.2637 -0.1365 2.2521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009777886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:50 Heat of formation + Delta-G solvation = -29.596359 kcal Electronic energy + Delta-G solvation = -28300.147101 eV Core-core repulsion = 24584.125030 eV Total energy + Delta-G solvation = -3716.022071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51791 -40.30286 -39.08883 -36.11805 -35.64967 -34.35191 -34.26002 -32.71971 -31.32868 -30.78590 -29.66628 -27.25203 -25.86924 -24.96569 -23.84779 -23.76332 -22.57893 -22.48602 -21.36355 -20.65687 -18.81718 -18.60300 -17.59351 -17.26604 -16.62513 -16.47119 -16.31177 -15.87579 -15.69576 -15.45583 -14.98147 -14.88675 -14.76311 -14.62154 -14.59126 -14.39709 -14.14738 -14.11341 -13.75916 -13.46877 -13.33262 -13.21797 -12.83079 -12.79103 -12.65883 -12.48167 -12.45018 -12.13121 -12.04050 -11.87855 -11.72108 -11.66995 -11.51798 -11.46134 -11.38077 -11.03590 -10.77923 -10.26656 -9.82930 -9.58451 -8.95589 -8.19848 -5.54331 -0.16109 0.38700 1.28449 1.40549 1.51262 1.80816 2.05193 2.39393 2.82908 3.02534 3.31685 3.63785 3.71272 3.82263 3.86366 3.95203 4.00870 4.07719 4.12361 4.21138 4.29775 4.38319 4.42495 4.46335 4.53593 4.54684 4.60128 4.62742 4.67449 4.77316 4.85793 4.89944 4.96978 5.00955 5.01857 5.05156 5.06524 5.09683 5.12314 5.17835 5.22894 5.32272 5.34008 5.34697 5.46106 5.50373 5.51762 5.66852 5.81514 5.96188 6.07724 6.53228 6.86747 7.21141 7.56863 7.94518 9.00595 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002469 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.441654 B =11337.141614 C =12011.062287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.054 4.054 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.152 4.152 7 C 0.549 3.451 8 O -0.589 6.589 9 N -0.700 5.700 10 C 0.137 3.863 11 H 0.051 0.949 12 C -0.105 4.105 13 C -0.127 4.127 14 C 0.112 3.888 15 N -0.617 5.617 16 C -0.258 4.258 17 H 0.032 0.968 18 C -0.039 4.039 19 N -0.960 5.960 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.310 1.310 23 H -0.256 1.256 24 C 0.146 3.854 25 C -0.079 4.079 26 C -0.093 4.093 27 C -0.088 4.088 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.416 0.584 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.264 0.736 44 H 0.025 0.975 45 H 0.044 0.956 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.039 0.961 50 H 0.073 0.927 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.504 -26.509 -9.992 33.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.054 4.054 4 C -0.138 4.138 5 C -0.101 4.101 6 C -0.156 4.156 7 C 0.338 3.662 8 O -0.470 6.470 9 N -0.352 5.352 10 C 0.031 3.969 11 H 0.070 0.930 12 C -0.143 4.143 13 C -0.166 4.166 14 C -0.012 4.012 15 N -0.343 5.343 16 C -0.388 4.388 17 H 0.050 0.950 18 C -0.233 4.233 19 N -0.605 5.605 20 Si 0.789 3.211 21 H -0.191 1.191 22 H -0.239 1.239 23 H -0.180 1.180 24 C 0.019 3.981 25 C -0.098 4.098 26 C -0.093 4.093 27 C -0.125 4.125 28 C -0.204 4.204 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.255 0.745 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.127 0.873 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.325 -25.958 -9.227 33.088 hybrid contribution 0.974 0.897 0.110 1.329 sum -17.352 -25.061 -9.117 31.816 Atomic orbital electron populations 1.21760 0.93902 1.02703 1.02075 1.20739 0.96743 0.90800 1.04417 1.20322 0.95752 0.97248 0.92064 1.21346 0.99243 0.94320 0.98934 1.21531 0.96885 0.95096 0.96557 1.19825 1.06728 0.92974 0.96025 1.18901 0.76659 0.87104 0.83559 1.90791 1.55775 1.67180 1.33283 1.45742 1.65863 1.14486 1.09146 1.21308 0.94292 0.81731 0.99598 0.93025 1.21652 1.02695 0.95487 0.94448 1.21930 0.95211 0.96921 1.02534 1.21579 0.96202 0.95590 0.87784 1.44364 1.61501 1.10881 1.17508 1.18759 1.15591 1.16986 0.87414 0.94967 1.26034 0.98059 0.97132 1.02083 1.70008 1.35855 1.18656 1.36006 0.85693 0.76208 0.78872 0.80353 1.19078 1.23872 1.18041 1.21261 0.92991 0.85261 0.98538 1.21159 0.96539 0.94961 0.97125 1.19892 0.99918 0.92927 0.96581 1.20654 0.99626 0.99471 0.92715 1.21766 0.97070 0.99754 1.01809 0.90792 0.92977 0.92547 0.89804 0.89205 0.82198 0.83032 0.74504 0.89092 0.89001 0.93415 0.88076 0.93129 0.93560 0.92760 0.95592 0.93768 0.87250 0.91622 0.88641 0.94207 0.90852 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.72 71.98 0.70 -0.43 16 2 C -0.09 -0.78 5.38 29.85 0.16 -0.62 16 3 C -0.05 -0.78 5.14 -19.81 -0.10 -0.88 16 4 C -0.12 -1.62 9.66 22.23 0.21 -1.41 16 5 C -0.08 -1.40 9.54 22.52 0.21 -1.19 16 6 C -0.15 -3.93 5.87 -20.09 -0.12 -4.05 16 7 C 0.55 18.31 7.74 86.78 0.67 18.98 16 8 O -0.59 -26.40 16.01 -3.88 -0.06 -26.46 16 9 N -0.70 -19.32 5.03 -445.03 -2.24 -21.56 16 10 C 0.14 4.75 2.60 45.07 0.12 4.87 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.11 -2.72 5.35 30.62 0.16 -2.56 16 13 C -0.13 -4.00 6.08 30.67 0.19 -3.81 16 14 C 0.11 4.69 4.20 86.36 0.36 5.06 16 15 N -0.62 -31.01 2.77 -699.10 -1.94 -32.94 16 16 C -0.26 -15.94 10.03 84.03 0.84 -15.09 16 17 H 0.03 2.27 8.06 -2.91 -0.02 2.25 16 18 C -0.04 -2.37 5.23 84.86 0.44 -1.93 16 19 N -0.96 -63.31 13.97 21.65 0.30 -63.00 16 20 Si 0.96 47.45 24.35 68.60 1.67 49.12 16 21 H -0.26 -11.98 6.62 99.48 0.66 -11.33 16 22 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.26 -11.89 6.64 99.48 0.66 -11.23 16 24 C 0.15 6.31 6.09 86.37 0.53 6.83 16 25 C -0.08 -2.05 9.22 22.53 0.21 -1.84 16 26 C -0.09 -1.77 5.13 -19.90 -0.10 -1.88 16 27 C -0.09 -1.31 5.38 29.85 0.16 -1.15 16 28 C -0.15 -2.02 9.72 71.98 0.70 -1.32 16 29 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.05 0.47 6.79 -2.39 -0.02 0.46 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.67 5.59 -2.39 -0.01 0.65 16 33 H 0.09 0.52 8.05 -2.39 -0.02 0.51 16 34 H 0.16 1.10 8.06 -2.92 -0.02 1.08 16 35 H 0.15 1.66 6.41 -2.91 -0.02 1.64 16 36 H 0.42 7.57 6.64 -92.71 -0.62 6.95 16 37 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 2.35 4.49 -2.39 -0.01 2.34 16 42 H 0.05 1.77 7.08 -2.39 -0.02 1.75 16 43 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 44 H 0.03 1.30 7.93 -2.39 -0.02 1.28 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.11 3.30 7.65 -2.91 -0.02 3.28 16 47 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 48 H 0.10 1.04 5.59 -2.39 -0.01 1.03 16 49 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.78 6.79 -2.39 -0.02 0.76 16 Total: -1.00 -83.39 390.91 3.30 -80.09 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.21 Total: 17.17 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.35 Total: -2.42 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.87 Total: -117.50 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.06 Total: -26.46 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.67 Total: 49.12 kcal Total: -83.39 3.30 -80.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009777886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.495 kcal (2) G-P(sol) polarization free energy of solvation -83.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds