Wall clock time and date at job start Tue Mar 31 2020 16:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46711 * 2 1 4 4 C 1.38237 * 120.00045 * 90.00374 * 3 2 1 5 5 C 1.38238 * 120.00129 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99740 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99797 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47286 * 305.94223 * 7 6 5 9 9 C 1.52998 * 109.47041 * 185.93663 * 7 6 5 10 10 C 1.50701 * 109.46739 * 65.94022 * 7 6 5 11 11 O 1.21288 * 120.00358 * 355.56392 * 10 7 6 12 12 N 1.34775 * 119.99988 * 175.55961 * 10 7 6 13 13 C 1.46501 * 120.00076 * 179.97438 * 12 10 7 14 14 H 1.08996 * 110.64122 * 36.69633 * 13 12 10 15 15 C 1.55161 * 110.71874 * 160.02378 * 13 12 10 16 16 C 1.54909 * 101.57889 * 153.86376 * 15 13 12 17 17 N 1.47419 * 104.83545 * 322.99239 * 16 15 13 18 18 C 1.36938 * 125.64900 * 204.09331 * 17 16 15 19 19 H 1.08001 * 119.99951 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99833 * 0.03993 * 18 17 16 21 21 N 1.31623 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47404 * 89.99565 * 22 20 18 24 24 H 1.48502 * 109.46993 * 210.00080 * 22 20 18 25 25 H 1.48508 * 109.46895 * 329.99758 * 22 20 18 26 26 C 1.47020 * 108.70336 * 24.12904 * 17 16 15 27 27 C 1.38230 * 120.00477 * 0.26001 * 6 5 4 28 28 C 1.38240 * 120.00124 * 269.97444 * 3 2 1 29 29 H 1.08997 * 109.47810 * 60.00014 * 1 2 3 30 30 H 1.09007 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47215 * 299.99573 * 1 2 3 32 32 H 1.08997 * 109.46639 * 240.00282 * 2 1 3 33 33 H 1.08997 * 109.47078 * 119.99845 * 2 1 3 34 34 H 1.07996 * 119.99986 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99744 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.46782 * 299.99865 * 8 7 6 37 37 H 1.09003 * 109.47231 * 179.97438 * 8 7 6 38 38 H 1.09001 * 109.47112 * 59.99541 * 8 7 6 39 39 H 1.09003 * 109.46841 * 180.02562 * 9 7 6 40 40 H 1.08995 * 109.47755 * 300.00414 * 9 7 6 41 41 H 1.09005 * 109.46779 * 60.00856 * 9 7 6 42 42 H 0.97004 * 119.99751 * 0.02562 * 12 10 7 43 43 H 1.08996 * 111.00758 * 271.94126 * 15 13 12 44 44 H 1.09004 * 111.00162 * 35.79353 * 15 13 12 45 45 H 1.08997 * 110.36622 * 204.15248 * 16 15 13 46 46 H 1.09008 * 110.45669 * 81.88243 * 16 15 13 47 47 H 0.97002 * 119.99771 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.88444 * 239.52561 * 26 17 16 49 49 H 1.08995 * 110.01382 * 118.42977 * 26 17 16 50 50 H 1.08003 * 120.00687 * 179.72162 * 27 6 5 51 51 H 1.07991 * 119.99975 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0724 1.1972 5 6 2.7228 3.3760 1.1972 6 6 2.9531 4.0276 0.0000 7 6 3.4542 5.4489 0.0000 8 6 2.5222 6.3184 0.8463 9 6 3.4836 5.9793 -1.4348 10 6 4.8446 5.4912 0.5798 11 8 5.3451 4.4822 1.0297 12 7 5.5320 6.6503 0.5983 13 6 6.8835 6.6916 1.1624 14 1 7.4246 5.7742 0.9309 15 6 7.6561 7.9342 0.6462 16 6 8.6709 8.1679 1.7930 17 7 7.9293 7.8434 3.0251 18 6 8.2158 8.3177 4.2774 19 1 7.6097 8.0187 5.1198 20 6 9.2849 9.1831 4.4640 21 7 10.0231 9.5482 3.4372 22 14 9.6761 9.8297 6.1723 23 1 10.6263 8.9078 6.8449 24 1 10.2883 11.1782 6.0630 25 1 8.4247 9.9171 6.9671 26 6 6.8319 6.9254 2.6869 27 6 2.7181 3.3777 -1.1971 28 6 2.2631 2.0723 -1.1972 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5634 2.1324 35 1 2.9024 3.8852 2.1325 36 1 1.5166 6.2877 0.4269 37 1 2.8849 7.3463 0.8466 38 1 2.5012 5.9404 1.8684 39 1 3.8465 7.0071 -1.4348 40 1 4.1476 5.3599 -2.0377 41 1 2.4779 5.9487 -1.8541 42 1 5.1317 7.4574 0.2388 43 1 8.1686 7.7144 -0.2903 44 1 6.9898 8.7895 0.5337 45 1 8.9937 9.2089 1.8077 46 1 9.5302 7.5065 1.6820 47 1 10.7700 10.1533 3.5676 48 1 5.8765 7.3727 2.9612 49 1 6.9621 5.9790 3.2117 50 1 2.8937 3.8883 -2.1325 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015962642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:58 Heat of formation + Delta-G solvation = 0.257077 kcal Electronic energy + Delta-G solvation = -28471.974485 eV Core-core repulsion = 24757.246956 eV Total energy + Delta-G solvation = -3714.727529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66438 -39.05935 -37.30827 -35.77041 -34.12312 -33.23785 -31.70963 -31.12567 -29.21928 -28.74121 -27.62605 -27.04874 -24.73946 -24.39157 -23.01067 -22.36421 -21.11618 -20.49071 -19.91638 -19.22523 -17.29439 -16.69286 -16.52014 -15.84110 -15.60158 -15.16276 -14.67739 -14.54020 -14.33009 -14.23664 -13.99110 -13.81964 -13.49243 -13.45716 -13.07042 -12.69885 -12.59978 -12.46593 -12.38100 -12.21476 -11.97888 -11.87035 -11.70257 -11.61570 -11.49585 -11.27857 -11.08786 -10.93221 -10.82460 -10.77978 -10.73091 -10.47077 -10.11722 -9.82512 -9.61257 -9.42829 -8.89656 -8.70232 -8.65406 -8.55766 -6.83727 -5.65895 -3.07271 1.27335 1.41739 2.83922 3.32855 3.40691 3.45600 3.47387 3.80427 4.33990 4.49272 4.57719 4.63315 4.72402 4.79214 4.91894 4.97866 5.08841 5.12849 5.30879 5.32591 5.35774 5.38561 5.45402 5.47441 5.51138 5.53930 5.58043 5.62513 5.66392 5.74039 5.80286 5.83262 5.85969 5.90312 5.98280 6.02344 6.04993 6.21607 6.39912 6.40988 6.48417 6.56505 6.57596 6.60082 6.76726 6.97606 7.03830 7.47372 7.61916 7.74386 7.84614 8.33967 8.46728 9.21750 9.82363 10.46628 11.38319 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.002378 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.494469 B =11772.873417 C =12379.642028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.119 4.119 5 C -0.082 4.082 6 C -0.061 4.061 7 C -0.043 4.043 8 C -0.138 4.138 9 C -0.143 4.143 10 C 0.520 3.480 11 O -0.531 6.531 12 N -0.714 5.714 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.149 4.149 16 C 0.153 3.847 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.924 5.924 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.130 3.870 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.397 0.603 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.015 0.985 47 H 0.252 0.748 48 H 0.024 0.976 49 H 0.026 0.974 50 H 0.124 0.876 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.491 -11.469 -12.785 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.137 4.137 5 C -0.100 4.100 6 C -0.061 4.061 7 C -0.046 4.046 8 C -0.195 4.195 9 C -0.200 4.200 10 C 0.305 3.695 11 O -0.406 6.406 12 N -0.365 5.365 13 C 0.027 3.973 14 H 0.107 0.893 15 C -0.188 4.188 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.573 5.573 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.003 3.997 27 C -0.131 4.131 28 C -0.140 4.140 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.128 0.872 46 H 0.033 0.967 47 H 0.063 0.937 48 H 0.042 0.958 49 H 0.044 0.956 50 H 0.142 0.858 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.965 -12.062 -12.338 25.639 hybrid contribution 0.176 0.663 0.775 1.035 sum -18.789 -11.399 -11.563 24.832 Atomic orbital electron populations 1.21743 0.94859 1.01511 1.02174 1.20529 0.96033 0.92914 1.02742 1.19854 0.99394 0.96038 0.93295 1.20959 1.00466 0.94816 0.97428 1.20919 0.96861 0.94572 0.97691 1.19268 0.99319 0.94011 0.93546 1.19724 0.93276 0.94090 0.97533 1.21879 0.98871 0.98988 0.99797 1.21957 1.02942 1.01303 0.93846 1.20309 0.86800 0.83542 0.78831 1.90724 1.69739 1.33868 1.46286 1.46068 1.17263 1.10910 1.62271 1.22084 0.81158 0.99707 0.94301 0.89272 1.23312 0.99644 0.95731 1.00103 1.21937 0.90296 1.03593 0.81390 1.44451 1.31603 1.52169 1.04770 1.19084 1.10393 1.21229 0.84081 0.90507 1.24789 0.97883 1.00308 0.97808 1.69771 1.20836 1.38748 1.27921 0.86053 0.78034 0.78064 0.83239 1.21609 1.21646 1.20714 1.21585 0.92329 0.93643 0.92176 1.21079 0.99722 0.94766 0.97565 1.20910 1.01005 0.94790 0.97307 0.92628 0.92564 0.92566 0.91204 0.91123 0.86336 0.86273 0.91285 0.91503 0.91702 0.91609 0.91647 0.91109 0.76901 0.91776 0.91685 0.87191 0.96689 0.93715 0.95780 0.95633 0.85786 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.68 6.06 -27.89 -0.17 -0.85 16 3 C -0.09 -0.90 5.13 -104.63 -0.54 -1.43 16 4 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 5 C -0.08 -1.06 8.15 -39.58 -0.32 -1.38 16 6 C -0.06 -0.75 4.33 -104.62 -0.45 -1.20 16 7 C -0.04 -0.48 0.72 -156.81 -0.11 -0.59 16 8 C -0.14 -1.33 8.17 37.16 0.30 -1.03 16 9 C -0.14 -1.23 7.01 37.16 0.26 -0.97 16 10 C 0.52 7.86 6.40 -10.99 -0.07 7.79 16 11 O -0.53 -10.25 15.05 5.55 0.08 -10.17 16 12 N -0.71 -10.43 4.95 -52.03 -0.26 -10.69 16 13 C 0.13 2.43 3.24 -66.09 -0.21 2.21 16 14 H 0.09 1.77 7.69 -51.93 -0.40 1.37 16 15 C -0.15 -2.71 6.69 -24.58 -0.16 -2.88 16 16 C 0.15 3.69 5.89 -2.53 -0.01 3.68 16 17 N -0.60 -15.76 3.39 -170.08 -0.58 -16.33 16 18 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 22 Si 0.92 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.13 2.88 6.99 -3.07 -0.02 2.86 16 27 C -0.11 -1.23 8.99 -39.58 -0.36 -1.59 16 28 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.57 7.23 -52.49 -0.38 1.19 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 38 H 0.06 0.69 7.08 -51.93 -0.37 0.32 16 39 H 0.06 0.49 7.33 -51.93 -0.38 0.11 16 40 H 0.06 0.59 7.25 -51.93 -0.38 0.21 16 41 H 0.07 0.49 7.78 -51.93 -0.40 0.09 16 42 H 0.40 4.69 7.41 -40.82 -0.30 4.39 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 45 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 46 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.12 1.10 5.91 -52.48 -0.31 0.79 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -32.90 400.05 -10.37 -43.26 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.66 Total: 3.22 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.52 Total: -6.22 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.28 Total: -53.36 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.90 -10.37 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015962642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.519 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds