Wall clock time and date at job start Tue Mar 31 2020 16:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46711 * 2 1 4 4 C 1.38237 * 120.00045 * 90.00374 * 3 2 1 5 5 C 1.38238 * 120.00129 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99740 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99797 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47286 * 305.94223 * 7 6 5 9 9 C 1.52998 * 109.47041 * 185.93663 * 7 6 5 10 10 C 1.50701 * 109.46739 * 65.94022 * 7 6 5 11 11 O 1.21288 * 120.00358 * 355.56392 * 10 7 6 12 12 N 1.34775 * 119.99988 * 175.55961 * 10 7 6 13 13 C 1.46501 * 120.00076 * 179.97438 * 12 10 7 14 14 H 1.08996 * 110.64122 * 36.69633 * 13 12 10 15 15 C 1.55161 * 110.71874 * 160.02378 * 13 12 10 16 16 C 1.54909 * 101.57889 * 153.86376 * 15 13 12 17 17 N 1.47419 * 104.83545 * 322.99239 * 16 15 13 18 18 C 1.36938 * 125.64900 * 204.09331 * 17 16 15 19 19 H 1.08001 * 119.99951 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99833 * 0.03993 * 18 17 16 21 21 N 1.31623 * 120.00320 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47404 * 89.99565 * 22 20 18 24 24 H 1.48502 * 109.46993 * 210.00080 * 22 20 18 25 25 H 1.48508 * 109.46895 * 329.99758 * 22 20 18 26 26 C 1.47020 * 108.70336 * 24.12904 * 17 16 15 27 27 C 1.38230 * 120.00477 * 0.26001 * 6 5 4 28 28 C 1.38240 * 120.00124 * 269.97444 * 3 2 1 29 29 H 1.08997 * 109.47810 * 60.00014 * 1 2 3 30 30 H 1.09007 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47215 * 299.99573 * 1 2 3 32 32 H 1.08997 * 109.46639 * 240.00282 * 2 1 3 33 33 H 1.08997 * 109.47078 * 119.99845 * 2 1 3 34 34 H 1.07996 * 119.99986 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99744 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.46782 * 299.99865 * 8 7 6 37 37 H 1.09003 * 109.47231 * 179.97438 * 8 7 6 38 38 H 1.09001 * 109.47112 * 59.99541 * 8 7 6 39 39 H 1.09003 * 109.46841 * 180.02562 * 9 7 6 40 40 H 1.08995 * 109.47755 * 300.00414 * 9 7 6 41 41 H 1.09005 * 109.46779 * 60.00856 * 9 7 6 42 42 H 0.97004 * 119.99751 * 0.02562 * 12 10 7 43 43 H 1.08996 * 111.00758 * 271.94126 * 15 13 12 44 44 H 1.09004 * 111.00162 * 35.79353 * 15 13 12 45 45 H 1.08997 * 110.36622 * 204.15248 * 16 15 13 46 46 H 1.09008 * 110.45669 * 81.88243 * 16 15 13 47 47 H 0.97002 * 119.99771 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.88444 * 239.52561 * 26 17 16 49 49 H 1.08995 * 110.01382 * 118.42977 * 26 17 16 50 50 H 1.08003 * 120.00687 * 179.72162 * 27 6 5 51 51 H 1.07991 * 119.99975 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0724 1.1972 5 6 2.7228 3.3760 1.1972 6 6 2.9531 4.0276 0.0000 7 6 3.4542 5.4489 0.0000 8 6 2.5222 6.3184 0.8463 9 6 3.4836 5.9793 -1.4348 10 6 4.8446 5.4912 0.5798 11 8 5.3451 4.4822 1.0297 12 7 5.5320 6.6503 0.5983 13 6 6.8835 6.6916 1.1624 14 1 7.4246 5.7742 0.9309 15 6 7.6561 7.9342 0.6462 16 6 8.6709 8.1679 1.7930 17 7 7.9293 7.8434 3.0251 18 6 8.2158 8.3177 4.2774 19 1 7.6097 8.0187 5.1198 20 6 9.2849 9.1831 4.4640 21 7 10.0231 9.5482 3.4372 22 14 9.6761 9.8297 6.1723 23 1 10.6263 8.9078 6.8449 24 1 10.2883 11.1782 6.0630 25 1 8.4247 9.9171 6.9671 26 6 6.8319 6.9254 2.6869 27 6 2.7181 3.3777 -1.1971 28 6 2.2631 2.0723 -1.1972 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0823 1.5634 2.1324 35 1 2.9024 3.8852 2.1325 36 1 1.5166 6.2877 0.4269 37 1 2.8849 7.3463 0.8466 38 1 2.5012 5.9404 1.8684 39 1 3.8465 7.0071 -1.4348 40 1 4.1476 5.3599 -2.0377 41 1 2.4779 5.9487 -1.8541 42 1 5.1317 7.4574 0.2388 43 1 8.1686 7.7144 -0.2903 44 1 6.9898 8.7895 0.5337 45 1 8.9937 9.2089 1.8077 46 1 9.5302 7.5065 1.6820 47 1 10.7700 10.1533 3.5676 48 1 5.8765 7.3727 2.9612 49 1 6.9621 5.9790 3.2117 50 1 2.8937 3.8883 -2.1325 51 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015962642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:57 Heat of formation + Delta-G solvation = -18.098627 kcal Electronic energy + Delta-G solvation = -28472.770448 eV Core-core repulsion = 24757.246956 eV Total energy + Delta-G solvation = -3715.523492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71646 -40.14640 -38.89944 -36.73244 -35.67106 -34.23630 -33.40452 -31.95317 -31.01984 -29.59726 -28.76932 -28.31262 -26.56414 -25.28013 -24.02599 -23.22680 -22.30287 -22.05971 -21.43514 -20.36891 -19.02831 -17.99203 -17.69644 -17.08291 -16.67529 -16.46168 -16.24245 -15.81573 -15.58873 -15.35076 -15.04697 -14.69541 -14.57084 -14.27778 -14.25757 -14.17815 -13.79245 -13.56385 -13.41061 -13.33189 -13.21181 -13.02438 -12.93339 -12.75242 -12.65635 -12.50974 -12.45765 -12.21087 -12.17738 -12.03299 -11.90310 -11.86208 -11.58978 -11.50793 -11.43864 -10.78815 -10.68627 -10.10422 -9.75191 -9.39634 -8.94322 -7.81027 -5.26308 0.42557 0.56263 1.45054 1.47298 1.55948 1.64496 2.14082 2.48194 2.90840 3.28861 3.48688 3.63695 3.72922 3.81375 3.92476 3.96097 4.01963 4.07883 4.09861 4.17755 4.22090 4.38815 4.52562 4.56726 4.57374 4.67307 4.72700 4.73380 4.75876 4.83291 4.86502 4.87755 4.90830 4.98903 5.03167 5.06494 5.10016 5.16668 5.22987 5.23873 5.29061 5.39564 5.41717 5.53032 5.57405 5.59474 5.74006 5.75769 5.76238 6.15967 6.27414 6.59383 7.07437 7.28076 7.72660 8.35936 9.20620 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.002378 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.494469 B =11772.873417 C =12379.642028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.105 4.105 6 C -0.079 4.079 7 C -0.034 4.034 8 C -0.137 4.137 9 C -0.142 4.142 10 C 0.518 3.482 11 O -0.577 6.577 12 N -0.701 5.701 13 C 0.150 3.850 14 H 0.074 0.926 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.074 0.926 20 C -0.063 4.063 21 N -0.945 5.945 22 Si 0.982 3.018 23 H -0.289 1.289 24 H -0.287 1.287 25 H -0.271 1.271 26 C 0.130 3.870 27 C -0.117 4.117 28 C -0.127 4.127 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.415 0.585 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.084 0.916 46 H -0.013 1.013 47 H 0.250 0.750 48 H 0.029 0.971 49 H 0.001 0.999 50 H 0.147 0.853 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.393 -11.266 -14.777 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.153 4.153 5 C -0.123 4.123 6 C -0.079 4.079 7 C -0.037 4.037 8 C -0.194 4.194 9 C -0.199 4.199 10 C 0.305 3.695 11 O -0.456 6.456 12 N -0.353 5.353 13 C 0.044 3.956 14 H 0.092 0.908 15 C -0.164 4.164 16 C 0.027 3.973 17 N -0.350 5.350 18 C -0.373 4.373 19 H 0.092 0.908 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.810 3.190 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.196 1.196 26 C 0.003 3.997 27 C -0.134 4.134 28 C -0.145 4.145 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.252 0.748 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.005 0.995 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.019 0.981 50 H 0.165 0.835 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.909 -11.845 -14.356 27.992 hybrid contribution 0.764 0.511 1.431 1.701 sum -20.145 -11.333 -12.924 26.482 Atomic orbital electron populations 1.21715 0.93853 1.02392 1.01961 1.20580 0.96832 0.91420 1.03329 1.20175 0.98673 0.97163 0.92972 1.21143 1.00942 0.94681 0.98492 1.20967 0.98301 0.95421 0.97637 1.19464 0.99947 0.94706 0.93778 1.19723 0.90344 0.94306 0.99316 1.21906 0.99740 0.99073 0.98686 1.22012 1.04485 1.01905 0.91495 1.21116 0.88044 0.82590 0.77711 1.90707 1.71103 1.35569 1.48232 1.45846 1.15781 1.11897 1.61760 1.21613 0.83198 0.99118 0.91661 0.90786 1.23113 0.98309 0.96166 0.98796 1.21788 0.91206 1.01219 0.83118 1.44737 1.32603 1.52772 1.04852 1.19397 1.10878 1.21724 0.85260 0.90784 1.25631 0.97762 1.00589 1.01617 1.70004 1.20918 1.38934 1.29614 0.85031 0.77937 0.77159 0.78883 1.21576 1.21320 1.19560 1.21657 0.91341 0.91716 0.94955 1.21388 0.99063 0.95106 0.97880 1.21275 1.00193 0.94794 0.98196 0.92385 0.91144 0.93235 0.90039 0.91134 0.85810 0.88006 0.89212 0.90288 0.93511 0.90027 0.91935 0.88795 0.74770 0.88754 0.89582 0.89793 0.99467 0.94045 0.95348 0.98135 0.83528 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 4 C -0.13 -3.16 9.70 22.27 0.22 -2.95 16 5 C -0.11 -2.78 8.15 22.27 0.18 -2.60 16 6 C -0.08 -1.85 4.33 -19.87 -0.09 -1.94 16 7 C -0.03 -0.70 0.72 -53.67 -0.04 -0.74 16 8 C -0.14 -2.41 8.17 71.98 0.59 -1.83 16 9 C -0.14 -1.94 7.01 71.98 0.50 -1.44 16 10 C 0.52 15.35 6.40 87.66 0.56 15.91 16 11 O -0.58 -22.85 15.05 -3.05 -0.05 -22.89 16 12 N -0.70 -19.42 4.95 -436.91 -2.16 -21.58 16 13 C 0.15 5.46 3.24 46.18 0.15 5.61 16 14 H 0.07 2.97 7.69 -2.39 -0.02 2.95 16 15 C -0.13 -4.37 6.69 31.99 0.21 -4.16 16 16 C 0.15 7.47 5.89 86.86 0.51 7.98 16 17 N -0.62 -33.37 3.39 -692.01 -2.35 -35.72 16 18 C -0.24 -14.15 10.27 84.03 0.86 -13.28 16 19 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 21 N -0.95 -56.16 10.09 21.65 0.22 -55.94 16 22 Si 0.98 46.23 29.55 68.60 2.03 48.25 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.13 5.92 6.99 86.73 0.61 6.53 16 27 C -0.12 -2.30 8.99 22.27 0.20 -2.10 16 28 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.99 8.09 -2.39 -0.02 0.98 16 33 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.10 2.92 7.23 -2.91 -0.02 2.90 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16 38 H 0.05 0.99 7.08 -2.39 -0.02 0.97 16 39 H 0.08 0.87 7.33 -2.39 -0.02 0.85 16 40 H 0.06 0.92 7.25 -2.39 -0.02 0.90 16 41 H 0.09 0.90 7.78 -2.38 -0.02 0.88 16 42 H 0.41 8.58 7.41 -92.71 -0.69 7.89 16 43 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.09 2.68 8.00 -2.39 -0.02 2.66 16 45 H 0.08 4.60 5.87 -2.39 -0.01 4.59 16 46 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 47 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 49 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.15 2.12 5.91 -2.91 -0.02 2.11 16 51 H 0.14 1.87 8.06 -2.92 -0.02 1.84 16 Total: -1.00 -74.41 400.05 3.85 -70.55 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.22 Total: 21.54 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.94 Total: -4.21 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.29 Total: -113.24 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -74.41 3.85 -70.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015962642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.455 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds