Wall clock time and date at job start Tue Mar 31 2020 16:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47260 * 2 1 4 4 C 1.38232 * 120.00014 * 270.27913 * 3 2 1 5 5 C 1.38236 * 119.99696 * 180.23860 * 4 3 2 6 6 C 1.38232 * 120.00177 * 359.48505 * 5 4 3 7 7 C 1.50696 * 120.00255 * 180.28343 * 6 5 4 8 8 C 1.53003 * 109.46911 * 307.23246 * 7 6 5 9 9 C 1.53000 * 109.47388 * 67.23368 * 7 6 5 10 10 C 1.50700 * 109.47189 * 187.23737 * 7 6 5 11 11 O 1.21285 * 119.99372 * 246.27978 * 10 7 6 12 12 N 1.34771 * 120.00539 * 66.28014 * 10 7 6 13 13 C 1.47428 * 125.64262 * 354.57385 * 12 10 7 14 14 C 1.54906 * 104.83101 * 204.08833 * 13 12 10 15 15 C 1.55159 * 101.58423 * 322.99213 * 14 13 12 16 16 H 1.09000 * 110.72336 * 277.13938 * 15 14 13 17 17 N 1.46499 * 110.72276 * 154.03598 * 15 14 13 18 18 C 1.36941 * 119.99505 * 86.45564 * 17 15 14 19 19 H 1.07997 * 120.00357 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99872 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00123 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46972 * 60.00191 * 22 20 18 24 24 H 1.48499 * 109.47324 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47120 * 300.00337 * 22 20 18 26 26 C 1.47017 * 125.65289 * 174.26444 * 12 10 7 27 27 C 1.38232 * 119.99749 * 0.25244 * 6 5 4 28 28 C 1.38229 * 119.99436 * 90.00284 * 3 2 1 29 29 H 1.08999 * 109.46478 * 299.99652 * 1 2 3 30 30 H 1.08997 * 109.46879 * 60.00121 * 1 2 3 31 31 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46850 * 240.00235 * 2 1 3 33 33 H 1.08998 * 109.47108 * 120.00627 * 2 1 3 34 34 H 1.08003 * 120.00205 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.99804 * 179.76395 * 5 4 3 36 36 H 1.09005 * 109.46938 * 68.32217 * 8 7 6 37 37 H 1.08998 * 109.47406 * 188.32230 * 8 7 6 38 38 H 1.08997 * 109.47444 * 308.32387 * 8 7 6 39 39 H 1.08995 * 109.46957 * 59.99983 * 9 7 6 40 40 H 1.08998 * 109.47466 * 180.02562 * 9 7 6 41 41 H 1.09006 * 109.46737 * 299.99931 * 9 7 6 42 42 H 1.08997 * 110.37328 * 322.93183 * 13 12 10 43 43 H 1.09006 * 110.36491 * 85.25383 * 13 12 10 44 44 H 1.09005 * 111.00384 * 81.06415 * 14 13 12 45 45 H 1.08998 * 111.00693 * 204.88129 * 14 13 12 46 46 H 0.97001 * 120.00499 * 266.45865 * 17 15 14 47 47 H 0.96996 * 120.00273 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.88263 * 298.39750 * 26 12 10 49 49 H 1.08997 * 109.88483 * 59.56047 * 26 12 10 50 50 H 1.08004 * 119.99774 * 180.02562 * 27 6 5 51 51 H 1.07997 * 120.00665 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2573 2.0744 -1.1971 5 6 2.7228 3.3760 -1.1971 6 6 2.9533 4.0276 0.0001 7 6 3.4547 5.4487 0.0001 8 6 4.7071 5.5477 -0.8732 9 6 2.3699 6.3724 -0.5575 10 6 3.7912 5.8626 1.4096 11 8 3.1427 6.7282 1.9585 12 7 4.8126 5.2711 2.0600 13 6 5.6071 4.1348 1.5590 14 6 6.1755 3.4570 2.8307 15 6 6.4706 4.6846 3.7326 16 1 7.4348 5.1259 3.4800 17 7 6.4291 4.3098 5.1482 18 6 7.5498 3.8121 5.7578 19 1 8.4643 3.6962 5.1951 20 6 7.5108 3.4574 7.0993 21 7 6.3965 3.5991 7.7852 22 14 9.0397 2.7791 7.9310 23 1 10.1304 3.7842 7.8573 24 1 8.7379 2.4804 9.3540 25 1 9.4664 1.5342 7.2430 26 6 5.3232 5.6561 3.3839 27 6 2.7232 3.3758 1.1972 28 6 2.2628 2.0723 1.1972 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0734 1.5667 -2.1325 35 1 2.9022 3.8854 -2.1324 36 1 4.4352 5.3925 -1.9173 37 1 5.1541 6.5350 -0.7570 38 1 5.4243 4.7859 -0.5675 39 1 1.4777 6.3019 0.0647 40 1 2.7327 7.4002 -0.5578 41 1 2.1266 6.0730 -1.5770 42 1 4.9714 3.4397 1.0106 43 1 6.4185 4.4901 0.9237 44 1 5.4334 2.8041 3.2903 45 1 7.0899 2.9082 2.6055 46 1 5.6079 4.4142 5.6538 47 1 6.3690 3.3509 8.7225 48 1 5.6975 6.6794 3.3536 49 1 4.5297 5.5714 4.1263 50 1 2.9029 3.8851 2.1325 51 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019625313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:49 Heat of formation + Delta-G solvation = -3.805622 kcal Electronic energy + Delta-G solvation = -29321.879752 eV Core-core repulsion = 25606.976050 eV Total energy + Delta-G solvation = -3714.903701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99440 -39.07697 -37.45235 -35.82314 -34.10177 -33.27716 -31.53115 -30.98136 -29.51611 -28.91354 -28.10642 -27.04658 -24.83410 -23.96012 -23.15240 -22.70685 -21.70763 -20.65241 -19.98519 -18.76987 -17.39061 -17.32609 -16.26093 -15.91066 -15.46369 -15.30676 -14.77687 -14.63632 -14.24893 -13.92992 -13.79032 -13.65568 -13.53724 -13.47040 -13.24812 -13.14003 -12.72799 -12.66035 -12.54515 -12.32609 -12.01935 -11.83424 -11.83242 -11.65478 -11.53440 -11.39492 -11.16987 -11.09943 -10.94573 -10.82527 -10.73541 -10.66340 -10.33546 -10.11089 -9.76188 -9.53229 -8.99731 -8.93947 -8.58612 -8.36117 -7.04601 -5.82418 -3.13052 1.20291 1.32955 2.74720 3.15177 3.40775 3.45534 3.46546 3.62370 4.37014 4.43636 4.54121 4.65510 4.72844 4.86458 4.89594 4.96558 5.04766 5.09516 5.15521 5.29618 5.33650 5.36757 5.38929 5.42860 5.45760 5.53685 5.59577 5.64698 5.66801 5.70357 5.72364 5.76897 5.80128 5.90203 5.95324 5.98276 6.00007 6.02213 6.14539 6.16873 6.26469 6.34666 6.39748 6.48402 6.54228 6.60218 6.61502 6.89942 6.91486 7.64135 7.74281 8.31816 8.35293 9.46326 10.00855 10.35587 11.39718 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.003379 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.305516 B = 8284.023546 C = 9789.094019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.118 4.118 5 C -0.107 4.107 6 C -0.076 4.076 7 C -0.037 4.037 8 C -0.147 4.147 9 C -0.122 4.122 10 C 0.537 3.463 11 O -0.542 6.542 12 N -0.608 5.608 13 C 0.090 3.910 14 C -0.153 4.153 15 C 0.173 3.827 16 H 0.062 0.938 17 N -0.715 5.715 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.100 3.900 27 C -0.106 4.106 28 C -0.110 4.110 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.126 0.874 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 -3.099 -22.336 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.136 4.136 5 C -0.125 4.125 6 C -0.076 4.076 7 C -0.040 4.040 8 C -0.204 4.204 9 C -0.179 4.179 10 C 0.325 3.675 11 O -0.419 6.419 12 N -0.341 5.341 13 C -0.033 4.033 14 C -0.194 4.194 15 C 0.061 3.939 16 H 0.080 0.920 17 N -0.356 5.356 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.023 4.023 27 C -0.124 4.124 28 C -0.128 4.128 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.143 0.857 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.843 -2.641 -21.969 23.829 hybrid contribution 0.636 -0.405 0.749 1.063 sum -8.207 -3.046 -21.220 22.955 Atomic orbital electron populations 1.21747 0.94786 1.01618 1.02225 1.20550 0.96128 0.92726 1.02902 1.19905 0.99023 0.96213 0.93163 1.20934 1.00512 0.94779 0.97404 1.20847 0.99799 0.94717 0.97139 1.19469 1.00500 0.94002 0.93670 1.19731 0.97586 0.93376 0.93293 1.22076 0.96012 1.03138 0.99173 1.21662 0.97616 0.98497 1.00159 1.19975 0.78995 0.81376 0.87183 1.90698 1.50185 1.32589 1.68427 1.48454 1.32561 1.33612 1.19519 1.22697 0.94654 0.87969 0.97959 1.23548 1.01126 1.00036 0.94709 1.21164 0.94991 0.91255 0.86500 0.91976 1.42341 1.12922 1.76053 1.04295 1.19159 0.90497 1.35039 0.92893 0.91048 1.24763 0.97220 1.01963 0.96643 1.69652 1.25610 1.53618 1.08880 0.86255 0.82370 0.78854 0.78595 1.21191 1.21662 1.21190 1.22286 0.97565 0.98919 0.83523 1.21272 0.98184 0.95083 0.97872 1.21040 0.99383 0.94652 0.97760 0.92469 0.92671 0.92469 0.91131 0.90885 0.86209 0.86014 0.91417 0.91819 0.90893 0.91669 0.91709 0.91983 0.90347 0.91709 0.90695 0.90685 0.77972 0.93311 0.91719 0.91155 0.85667 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.09 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.08 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 5 C -0.11 -1.04 8.84 -39.58 -0.35 -1.39 16 6 C -0.08 -0.89 3.47 -104.63 -0.36 -1.25 16 7 C -0.04 -0.44 0.59 -156.81 -0.09 -0.53 16 8 C -0.15 -1.42 7.68 37.16 0.29 -1.13 16 9 C -0.12 -1.36 7.66 37.16 0.28 -1.08 16 10 C 0.54 8.47 4.99 -10.99 -0.05 8.41 16 11 O -0.54 -10.49 16.32 5.55 0.09 -10.40 16 12 N -0.61 -9.42 2.60 -170.51 -0.44 -9.86 16 13 C 0.09 1.22 4.52 -2.53 -0.01 1.21 16 14 C -0.15 -2.51 6.77 -24.58 -0.17 -2.68 16 15 C 0.17 3.29 3.57 -66.09 -0.24 3.05 16 16 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 17 N -0.72 -17.38 5.25 -51.64 -0.27 -17.65 16 18 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 22 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 26 C 0.10 1.79 6.64 -3.06 -0.02 1.77 16 27 C -0.11 -1.40 7.04 -39.58 -0.28 -1.68 16 28 C -0.11 -1.32 9.70 -39.58 -0.38 -1.70 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 0.93 7.26 -52.48 -0.38 0.55 16 36 H 0.07 0.51 7.35 -51.93 -0.38 0.13 16 37 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 38 H 0.07 0.70 4.92 -51.93 -0.26 0.45 16 39 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.54 7.86 -51.93 -0.41 0.13 16 42 H 0.08 1.00 4.65 -51.93 -0.24 0.76 16 43 H 0.06 0.77 7.01 -51.93 -0.36 0.41 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.39 10.12 7.53 -40.82 -0.31 9.81 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 50 H 0.13 1.95 5.98 -52.48 -0.31 1.64 16 51 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -31.04 395.78 -9.82 -40.86 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.50 Total: 9.73 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.36 Total: -8.59 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.01 Total: -54.44 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.04 -9.82 -40.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019625313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.050 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds