Wall clock time and date at job start Tue Mar 31 2020 16:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47260 * 2 1 4 4 C 1.38232 * 120.00014 * 270.27913 * 3 2 1 5 5 C 1.38236 * 119.99696 * 180.23860 * 4 3 2 6 6 C 1.38232 * 120.00177 * 359.48505 * 5 4 3 7 7 C 1.50696 * 120.00255 * 180.28343 * 6 5 4 8 8 C 1.53003 * 109.46911 * 307.23246 * 7 6 5 9 9 C 1.53000 * 109.47388 * 67.23368 * 7 6 5 10 10 C 1.50700 * 109.47189 * 187.23737 * 7 6 5 11 11 O 1.21285 * 119.99372 * 246.27978 * 10 7 6 12 12 N 1.34771 * 120.00539 * 66.28014 * 10 7 6 13 13 C 1.47428 * 125.64262 * 354.57385 * 12 10 7 14 14 C 1.54906 * 104.83101 * 204.08833 * 13 12 10 15 15 C 1.55159 * 101.58423 * 322.99213 * 14 13 12 16 16 H 1.09000 * 110.72336 * 277.13938 * 15 14 13 17 17 N 1.46499 * 110.72276 * 154.03598 * 15 14 13 18 18 C 1.36941 * 119.99505 * 86.45564 * 17 15 14 19 19 H 1.07997 * 120.00357 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99872 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00123 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46972 * 60.00191 * 22 20 18 24 24 H 1.48499 * 109.47324 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47120 * 300.00337 * 22 20 18 26 26 C 1.47017 * 125.65289 * 174.26444 * 12 10 7 27 27 C 1.38232 * 119.99749 * 0.25244 * 6 5 4 28 28 C 1.38229 * 119.99436 * 90.00284 * 3 2 1 29 29 H 1.08999 * 109.46478 * 299.99652 * 1 2 3 30 30 H 1.08997 * 109.46879 * 60.00121 * 1 2 3 31 31 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46850 * 240.00235 * 2 1 3 33 33 H 1.08998 * 109.47108 * 120.00627 * 2 1 3 34 34 H 1.08003 * 120.00205 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.99804 * 179.76395 * 5 4 3 36 36 H 1.09005 * 109.46938 * 68.32217 * 8 7 6 37 37 H 1.08998 * 109.47406 * 188.32230 * 8 7 6 38 38 H 1.08997 * 109.47444 * 308.32387 * 8 7 6 39 39 H 1.08995 * 109.46957 * 59.99983 * 9 7 6 40 40 H 1.08998 * 109.47466 * 180.02562 * 9 7 6 41 41 H 1.09006 * 109.46737 * 299.99931 * 9 7 6 42 42 H 1.08997 * 110.37328 * 322.93183 * 13 12 10 43 43 H 1.09006 * 110.36491 * 85.25383 * 13 12 10 44 44 H 1.09005 * 111.00384 * 81.06415 * 14 13 12 45 45 H 1.08998 * 111.00693 * 204.88129 * 14 13 12 46 46 H 0.97001 * 120.00499 * 266.45865 * 17 15 14 47 47 H 0.96996 * 120.00273 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.88263 * 298.39750 * 26 12 10 49 49 H 1.08997 * 109.88483 * 59.56047 * 26 12 10 50 50 H 1.08004 * 119.99774 * 180.02562 * 27 6 5 51 51 H 1.07997 * 120.00665 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2573 2.0744 -1.1971 5 6 2.7228 3.3760 -1.1971 6 6 2.9533 4.0276 0.0001 7 6 3.4547 5.4487 0.0001 8 6 4.7071 5.5477 -0.8732 9 6 2.3699 6.3724 -0.5575 10 6 3.7912 5.8626 1.4096 11 8 3.1427 6.7282 1.9585 12 7 4.8126 5.2711 2.0600 13 6 5.6071 4.1348 1.5590 14 6 6.1755 3.4570 2.8307 15 6 6.4706 4.6846 3.7326 16 1 7.4348 5.1259 3.4800 17 7 6.4291 4.3098 5.1482 18 6 7.5498 3.8121 5.7578 19 1 8.4643 3.6962 5.1951 20 6 7.5108 3.4574 7.0993 21 7 6.3965 3.5991 7.7852 22 14 9.0397 2.7791 7.9310 23 1 10.1304 3.7842 7.8573 24 1 8.7379 2.4804 9.3540 25 1 9.4664 1.5342 7.2430 26 6 5.3232 5.6561 3.3839 27 6 2.7232 3.3758 1.1972 28 6 2.2628 2.0723 1.1972 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0734 1.5667 -2.1325 35 1 2.9022 3.8854 -2.1324 36 1 4.4352 5.3925 -1.9173 37 1 5.1541 6.5350 -0.7570 38 1 5.4243 4.7859 -0.5675 39 1 1.4777 6.3019 0.0647 40 1 2.7327 7.4002 -0.5578 41 1 2.1266 6.0730 -1.5770 42 1 4.9714 3.4397 1.0106 43 1 6.4185 4.4901 0.9237 44 1 5.4334 2.8041 3.2903 45 1 7.0899 2.9082 2.6055 46 1 5.6079 4.4142 5.6538 47 1 6.3690 3.3509 8.7225 48 1 5.6975 6.6794 3.3536 49 1 4.5297 5.5714 4.1263 50 1 2.9029 3.8851 2.1325 51 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019625313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:48 Heat of formation + Delta-G solvation = -20.508572 kcal Electronic energy + Delta-G solvation = -29322.604046 eV Core-core repulsion = 25606.976050 eV Total energy + Delta-G solvation = -3715.627995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09323 -40.09275 -38.86183 -36.80507 -35.90735 -34.04636 -33.28944 -31.88083 -31.03871 -29.68550 -29.56126 -27.99262 -26.17688 -25.16265 -24.55730 -23.67836 -22.63353 -21.70008 -21.43583 -19.91007 -19.34957 -18.43409 -17.42578 -17.18151 -16.70830 -16.28125 -16.16964 -15.71831 -15.42463 -15.36505 -14.98962 -14.76463 -14.61295 -14.53526 -14.33304 -14.07469 -14.01882 -13.81150 -13.42921 -13.35649 -13.19513 -13.10790 -12.96205 -12.85919 -12.68271 -12.62845 -12.37721 -12.29362 -12.16567 -12.13958 -11.97884 -11.77339 -11.69336 -11.68007 -11.51993 -10.94367 -10.80541 -9.82191 -9.70554 -9.41137 -9.06101 -7.95676 -5.26581 0.36999 0.48706 1.48097 1.51036 1.51330 1.57247 1.89307 2.56214 2.79361 3.28503 3.38596 3.56248 3.71390 3.76914 3.92378 3.93752 3.99791 4.02155 4.11413 4.16581 4.25409 4.32058 4.35101 4.47987 4.51351 4.56087 4.61399 4.64843 4.71217 4.73553 4.80471 4.84446 4.88383 4.91262 4.96762 5.03647 5.10198 5.13443 5.15205 5.18964 5.20619 5.23175 5.32769 5.39070 5.40651 5.51827 5.53274 5.63308 5.74682 6.09144 6.24036 6.48783 7.05047 7.30398 8.01705 8.26015 9.27740 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.003379 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.305516 B = 8284.023546 C = 9789.094019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.112 4.112 5 C -0.097 4.097 6 C -0.082 4.082 7 C -0.029 4.029 8 C -0.145 4.145 9 C -0.120 4.120 10 C 0.531 3.469 11 O -0.588 6.588 12 N -0.606 5.606 13 C 0.102 3.898 14 C -0.143 4.143 15 C 0.169 3.831 16 H 0.072 0.928 17 N -0.731 5.731 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.075 4.075 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.277 1.277 24 H -0.300 1.300 25 H -0.274 1.274 26 C 0.109 3.891 27 C -0.129 4.129 28 C -0.128 4.128 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.370 0.630 47 H 0.251 0.749 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.088 0.912 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 -4.379 -26.819 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.130 4.130 5 C -0.115 4.115 6 C -0.082 4.082 7 C -0.032 4.032 8 C -0.202 4.202 9 C -0.177 4.177 10 C 0.321 3.679 11 O -0.469 6.469 12 N -0.338 5.338 13 C -0.020 4.020 14 C -0.184 4.184 15 C 0.059 3.941 16 H 0.090 0.910 17 N -0.370 5.370 18 C -0.372 4.372 19 H 0.102 0.898 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.200 1.200 26 C -0.015 4.015 27 C -0.147 4.147 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.107 0.893 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.693 -3.934 -26.524 27.896 hybrid contribution 0.206 0.005 2.091 2.101 sum -7.487 -3.929 -24.433 25.855 Atomic orbital electron populations 1.21733 0.94334 1.02358 1.01773 1.20598 0.96444 0.91589 1.03615 1.20152 0.98300 0.97112 0.92800 1.21322 0.98909 0.94667 0.98081 1.21160 0.98305 0.94762 0.97247 1.19456 1.01195 0.93691 0.93895 1.19765 0.99197 0.93684 0.90584 1.22120 0.94502 1.03141 1.00390 1.21685 0.96268 0.98252 1.01524 1.20889 0.77887 0.80415 0.88697 1.90667 1.51516 1.34815 1.69865 1.48485 1.32880 1.34028 1.18437 1.22763 0.95293 0.87235 0.96686 1.23349 1.01240 0.98557 0.95233 1.21343 0.95665 0.92681 0.84388 0.91039 1.42529 1.11779 1.76379 1.06342 1.19605 0.91305 1.33215 0.93095 0.89782 1.25612 1.00096 1.03437 0.97602 1.69833 1.27888 1.55805 1.08713 0.85180 0.78955 0.78550 0.76872 1.20268 1.22612 1.20011 1.21991 0.96302 0.98737 0.84515 1.21065 1.00537 0.95805 0.97290 1.21058 1.00465 0.94520 0.98546 0.93993 0.92038 0.91176 0.89107 0.91497 0.83008 0.82681 0.88054 0.92064 0.90638 0.94108 0.92190 0.88435 0.88968 0.88603 0.93076 0.89248 0.79771 0.94076 0.91738 0.94222 0.89347 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.90 71.98 0.71 -1.22 16 2 C -0.09 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.08 -1.55 5.13 -19.87 -0.10 -1.65 16 4 C -0.11 -1.64 9.70 22.27 0.22 -1.43 16 5 C -0.10 -1.47 8.84 22.27 0.20 -1.28 16 6 C -0.08 -1.77 3.47 -19.87 -0.07 -1.83 16 7 C -0.03 -0.65 0.59 -53.67 -0.03 -0.68 16 8 C -0.14 -2.24 7.68 71.98 0.55 -1.69 16 9 C -0.12 -2.48 7.66 71.98 0.55 -1.92 16 10 C 0.53 17.10 4.99 87.66 0.44 17.53 16 11 O -0.59 -24.07 16.32 -3.04 -0.05 -24.12 16 12 N -0.61 -19.10 2.60 -811.78 -2.11 -21.21 16 13 C 0.10 2.62 4.52 86.85 0.39 3.02 16 14 C -0.14 -4.66 6.77 31.99 0.22 -4.45 16 15 C 0.17 6.55 3.57 46.19 0.17 6.72 16 16 H 0.07 2.67 8.12 -2.39 -0.02 2.65 16 17 N -0.73 -36.83 5.25 -317.30 -1.67 -38.50 16 18 C -0.24 -13.06 9.98 84.03 0.84 -12.22 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 21 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 22 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.11 4.08 6.64 86.73 0.58 4.66 16 27 C -0.13 -3.48 7.04 22.27 0.16 -3.33 16 28 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.96 8.09 -2.38 -0.02 0.94 16 33 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 1.35 7.26 -2.91 -0.02 1.33 16 36 H 0.10 0.93 7.35 -2.38 -0.02 0.91 16 37 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 38 H 0.07 1.13 4.92 -2.39 -0.01 1.12 16 39 H 0.04 1.03 8.03 -2.39 -0.02 1.01 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.29 7.86 -2.38 -0.02 1.28 16 42 H 0.09 2.20 4.65 -2.39 -0.01 2.19 16 43 H 0.10 1.95 7.01 -2.38 -0.02 1.94 16 44 H 0.05 1.91 8.14 -2.38 -0.02 1.90 16 45 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.37 20.68 7.53 -92.71 -0.70 19.98 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.04 1.72 7.70 -2.39 -0.02 1.70 16 50 H 0.09 3.01 5.98 -2.91 -0.02 2.99 16 51 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -71.67 395.78 4.38 -67.29 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.22 Total: 36.20 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 5.67 Total: -7.53 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -3.49 Total: -119.45 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.67 4.38 -67.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019625313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.782 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds