Wall clock time and date at job start Tue Mar 31 2020 16:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47042 * 2 1 4 4 C 1.38237 * 119.99699 * 90.00003 * 3 2 1 5 5 C 1.38236 * 119.99382 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00422 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99945 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47401 * 305.93930 * 7 6 5 9 9 C 1.53005 * 109.46994 * 185.93655 * 7 6 5 10 10 C 1.50704 * 109.46683 * 65.94082 * 7 6 5 11 11 O 1.21280 * 120.00092 * 355.56496 * 10 7 6 12 12 N 1.34774 * 119.99942 * 175.55725 * 10 7 6 13 13 C 1.46499 * 120.00313 * 179.97438 * 12 10 7 14 14 H 1.09003 * 112.90409 * 336.25740 * 13 12 10 15 15 C 1.53786 * 113.61395 * 107.50408 * 13 12 10 16 16 C 1.53773 * 87.07938 * 139.98420 * 15 13 12 17 17 H 1.09003 * 113.61338 * 220.01861 * 16 15 13 18 18 N 1.46501 * 113.69446 * 89.12617 * 16 15 13 19 19 C 1.36938 * 120.00175 * 107.45890 * 18 16 15 20 20 H 1.08002 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00104 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99625 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47307 * 89.99997 * 23 21 19 25 25 H 1.48501 * 109.46842 * 209.99480 * 23 21 19 26 26 H 1.48497 * 109.47017 * 329.99493 * 23 21 19 27 27 C 1.53774 * 113.61670 * 204.99994 * 13 12 10 28 28 C 1.38230 * 119.99980 * 0.25708 * 6 5 4 29 29 C 1.38235 * 120.00070 * 359.47013 * 28 6 5 30 30 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47413 * 300.00146 * 1 2 3 32 32 H 1.09000 * 109.46813 * 59.99997 * 1 2 3 33 33 H 1.09000 * 109.47413 * 239.99854 * 2 1 3 34 34 H 1.09000 * 109.46813 * 120.00003 * 2 1 3 35 35 H 1.07992 * 120.00229 * 359.97438 * 4 3 2 36 36 H 1.08011 * 119.99744 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.46888 * 179.97438 * 8 7 6 38 38 H 1.08994 * 109.47345 * 300.00235 * 8 7 6 39 39 H 1.09001 * 109.47111 * 60.00099 * 8 7 6 40 40 H 1.08996 * 109.46998 * 300.00696 * 9 7 6 41 41 H 1.08994 * 109.46658 * 60.00435 * 9 7 6 42 42 H 1.08998 * 109.46766 * 180.02562 * 9 7 6 43 43 H 0.97006 * 119.99671 * 0.02562 * 12 10 7 44 44 H 1.08996 * 113.61227 * 25.43071 * 15 13 12 45 45 H 1.09004 * 113.61290 * 254.53249 * 15 13 12 46 46 H 0.96996 * 119.99927 * 287.46632 * 18 16 15 47 47 H 0.97003 * 119.99122 * 180.02562 * 22 21 19 48 48 H 1.09003 * 113.61254 * 105.46933 * 27 13 12 49 49 H 1.09001 * 113.61960 * 334.57015 * 27 13 12 50 50 H 1.08004 * 119.99995 * 179.72442 * 28 6 5 51 51 H 1.07997 * 120.00393 * 180.27621 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7229 3.3759 1.1971 6 6 2.9533 4.0275 0.0000 7 6 3.4546 5.4488 0.0001 8 6 2.5225 6.3183 0.8461 9 6 3.4841 5.9792 -1.4348 10 6 4.8449 5.4910 0.5799 11 8 5.3453 4.4820 1.0298 12 7 5.5324 6.6501 0.5984 13 6 6.8838 6.6913 1.1626 14 1 7.0689 5.8912 1.8794 15 6 7.9893 6.8374 0.1036 16 6 8.6871 7.8002 1.0786 17 1 9.1375 8.6649 0.5911 18 7 9.5991 7.1343 2.0120 19 6 10.9533 7.2678 1.8587 20 1 11.3491 7.8643 1.0501 21 6 11.8174 6.6364 2.7428 22 7 13.1191 6.7651 2.5957 23 14 11.1330 5.6040 4.1409 24 1 10.9702 4.1999 3.6859 25 1 12.0705 5.6457 5.2919 26 1 9.8144 6.1457 4.5567 27 6 7.2967 8.0823 1.6717 28 6 2.7184 3.3776 -1.1971 29 6 2.2635 2.0722 -1.1972 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5635 2.1324 36 1 2.9026 3.8852 2.1325 37 1 2.8853 7.3462 0.8465 38 1 1.5169 6.2877 0.4268 39 1 2.5015 5.9405 1.8683 40 1 4.1481 5.3597 -2.0375 41 1 2.4785 5.9486 -1.8541 42 1 3.8470 7.0070 -1.4348 43 1 5.1321 7.4572 0.2388 44 1 7.6524 7.3156 -0.8161 45 1 8.5464 5.9179 -0.0758 46 1 9.2437 6.5987 2.7384 47 1 13.7229 6.3236 3.2133 48 1 7.2946 8.1679 2.7584 49 1 6.7704 8.9010 1.1808 50 1 2.8942 3.8882 -2.1324 51 1 2.0842 1.5628 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020899562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:32 Heat of formation + Delta-G solvation = 7.819418 kcal Electronic energy + Delta-G solvation = -28168.113406 eV Core-core repulsion = 24453.713804 eV Total energy + Delta-G solvation = -3714.399602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80257 -39.36970 -38.15398 -35.89245 -34.24583 -33.43195 -32.36189 -31.19963 -30.29871 -28.83635 -27.73747 -25.22777 -25.06366 -24.43195 -23.18454 -22.50699 -22.15269 -20.99941 -19.65053 -18.89734 -17.63039 -17.14670 -16.62159 -16.05113 -15.69279 -15.14343 -14.88975 -14.72614 -14.48132 -14.35866 -14.06100 -13.91856 -13.58398 -13.53334 -13.12343 -12.84981 -12.73926 -12.68275 -12.54127 -12.38420 -12.18104 -12.09392 -12.08374 -11.96782 -11.78932 -11.57649 -11.33132 -10.95166 -10.91101 -10.84276 -10.79482 -10.36856 -10.32870 -9.88226 -9.63572 -9.51706 -8.97180 -8.94439 -8.75934 -8.62773 -7.31266 -5.79637 -3.16223 1.20236 1.34868 2.69690 3.21598 3.38608 3.42741 3.46958 3.72037 4.23325 4.47467 4.57244 4.58004 4.62626 4.70668 4.79305 4.90013 4.93661 5.01872 5.08144 5.08270 5.20796 5.22533 5.24514 5.30585 5.37324 5.40497 5.43037 5.48637 5.49116 5.61097 5.67601 5.68854 5.75534 5.76357 5.84129 5.85542 5.95432 5.97782 5.99201 6.09893 6.25676 6.32895 6.49814 6.50316 6.52181 6.58010 6.68505 6.89337 6.91029 7.60751 7.96945 8.32299 8.39703 9.17007 9.89557 10.07895 11.38195 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002558 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.328119 B =10944.970923 C =12014.114963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.119 4.119 5 C -0.084 4.084 6 C -0.063 4.063 7 C -0.043 4.043 8 C -0.137 4.137 9 C -0.143 4.143 10 C 0.519 3.481 11 O -0.529 6.529 12 N -0.715 5.715 13 C 0.122 3.878 14 H 0.109 0.891 15 C -0.182 4.182 16 C 0.177 3.823 17 H 0.077 0.923 18 N -0.729 5.729 19 C -0.248 4.248 20 H 0.093 0.907 21 C 0.007 3.993 22 N -0.931 5.931 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.165 4.165 28 C -0.113 4.113 29 C -0.121 4.121 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.396 0.604 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.363 0.637 47 H 0.260 0.740 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.125 0.875 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.986 -4.538 -8.042 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.137 4.137 5 C -0.102 4.102 6 C -0.064 4.064 7 C -0.046 4.046 8 C -0.194 4.194 9 C -0.201 4.201 10 C 0.304 3.696 11 O -0.404 6.404 12 N -0.366 5.366 13 C 0.018 3.982 14 H 0.127 0.873 15 C -0.224 4.224 16 C 0.064 3.936 17 H 0.095 0.905 18 N -0.369 5.369 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.189 4.189 22 N -0.578 5.578 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.205 4.205 28 C -0.130 4.130 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.230 0.770 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.196 0.804 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.143 0.857 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -29.329 -5.212 -7.753 30.781 hybrid contribution -0.467 -0.433 0.860 1.070 sum -29.797 -5.645 -6.893 31.100 Atomic orbital electron populations 1.21740 0.94822 1.01561 1.02142 1.20539 0.96050 0.92864 1.02833 1.19869 0.99237 0.96063 0.93278 1.20956 1.00479 0.94796 0.97458 1.20882 0.97112 0.94620 0.97553 1.19253 0.99508 0.94012 0.93582 1.19729 0.93174 0.94160 0.97575 1.21870 0.99033 0.98788 0.99745 1.21955 1.03028 1.01248 0.93828 1.20363 0.86766 0.83644 0.78810 1.90740 1.69958 1.33651 1.46043 1.46085 1.17200 1.10863 1.62438 1.22642 0.79584 0.98744 0.97182 0.87332 1.24273 0.97613 1.02699 0.97814 1.20854 0.87903 0.94277 0.90530 0.90536 1.42537 1.03308 1.59034 1.32067 1.19087 0.80050 1.26785 1.11882 0.88961 1.24673 0.95108 1.00199 0.98907 1.69703 1.00952 1.47783 1.39361 0.86583 0.78077 0.81122 0.82980 1.20868 1.21603 1.20291 1.23910 0.99316 0.95692 1.01579 1.21087 0.99587 0.94797 0.97579 1.20928 1.00834 0.94764 0.97375 0.92514 0.92592 0.92623 0.91124 0.91094 0.86327 0.86428 0.91649 0.91209 0.91817 0.91526 0.91062 0.91673 0.77001 0.90841 0.90917 0.80392 0.92966 0.91015 0.89913 0.85739 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 5 C -0.08 -1.01 8.15 -39.58 -0.32 -1.33 16 6 C -0.06 -0.73 4.33 -104.62 -0.45 -1.18 16 7 C -0.04 -0.43 0.72 -156.81 -0.11 -0.55 16 8 C -0.14 -1.07 8.17 37.15 0.30 -0.77 16 9 C -0.14 -1.10 7.01 37.16 0.26 -0.84 16 10 C 0.52 7.16 6.40 -10.98 -0.07 7.09 16 11 O -0.53 -9.81 14.93 5.56 0.08 -9.73 16 12 N -0.72 -8.77 5.17 -53.02 -0.27 -9.05 16 13 C 0.12 1.90 4.12 -67.12 -0.28 1.62 16 14 H 0.11 2.03 7.47 -51.93 -0.39 1.64 16 15 C -0.18 -3.05 7.68 -25.92 -0.20 -3.25 16 16 C 0.18 3.29 4.56 -67.12 -0.31 2.98 16 17 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 18 N -0.73 -17.25 5.12 -52.64 -0.27 -17.52 16 19 C -0.25 -7.00 10.45 -15.06 -0.16 -7.16 16 20 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 23 Si 0.88 22.56 27.74 -169.99 -4.71 17.84 16 24 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 27 C -0.17 -2.41 7.58 -25.92 -0.20 -2.60 16 28 C -0.11 -1.18 8.99 -39.59 -0.36 -1.54 16 29 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.41 7.23 -52.48 -0.38 1.03 16 37 H 0.06 0.42 7.88 -51.93 -0.41 0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.55 7.08 -51.93 -0.37 0.18 16 40 H 0.07 0.58 7.25 -51.93 -0.38 0.20 16 41 H 0.07 0.44 7.78 -51.93 -0.40 0.03 16 42 H 0.06 0.41 7.33 -51.93 -0.38 0.02 16 43 H 0.40 3.55 7.62 -40.82 -0.31 3.24 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.36 8.59 5.76 -40.82 -0.24 8.35 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 50 H 0.12 1.07 5.91 -52.48 -0.31 0.76 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -34.30 404.96 -10.02 -44.32 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.64 Total: 10.12 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -3.09 Total: -13.52 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.23 Total: -55.13 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.30 -10.02 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020899562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.139 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds